CmaCh16G001970 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh16G001970
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr16: 890799 .. 891252 (+)
RNA-Seq Expression	CmaCh16G001970
Synteny	CmaCh16G001970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAACATGGCTTCAATTGCTTGGAAGAAACTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAGATTGAGTTCCACACCCGATATTGATGGTACGTTTATCCTTGCTTTTTATACTCAAATGATTATGATGTTGCTATCCAAGCTTGGTGCTGCCCGATGGGTTGATATTGATTTTAATATCCATTCTCTATGCAGGTATGAAGCCAAAGAGACCTCCTCCTCGTCCATCTGATGATCCAGCACATGCTGCTCCTCGTAATGGCAACTATTGAACTTTGAGATTCTCTATACAATTTCCCTTTATCAGTTTCATTATCATCGAATCGAATAAATATAGTTTTTACTCAAATCATTTGTGATTCACTACCTATTTGTATAAAACATCTAATGTGATTATTATTTATAAGAAATAGTCTTATTGTAACAGCTCC

mRNA sequence

ATGGCTTCCAACATGGCTTCAATTGCTTGGAAGAAACTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAGATTGAGTTCCACACCCGATATTGATGGTATGAAGCCAAAGAGACCTCCTCCTCGTCCATCTGATGATCCAGCACATGCTGCTCCTCGTAATGGCAACTATTGAACTTTGAGATTCTCTATACAATTTCCCTTTATCAGTTTCATTATCATCGAATCGAATAAATATAGTTTTTACTCAAATCATTTGTGATTCACTACCTATTTGTATAAAACATCTAATGTGATTATTATTTATAAGAAATAGTCTTATTGTAACAGCTCC

Coding sequence (CDS)

ATGGCTTCCAACATGGCTTCAATTGCTTGGAAGAAACTGTTGTCGATTGTTAGGCTCATCTTTCCTTCCAACGTAAATGCAAAGAGATTGAGTTCCACACCCGATATTGATGGTATGAAGCCAAAGAGACCTCCTCCTCGTCCATCTGATGATCCAGCACATGCTGCTCCTCGTAATGGCAACTATTGA

Protein sequence

MASNMASIAWKKLLSIVRLIFPSNVNAKRLSSTPDIDGMKPKRPPPRPSDDPAHAAPRNGNY

Homology

[Close]

BLAST of CmaCh16G001970 vs. ExPASy TrEMBL
Match: A0A0A0KUB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022250 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.5e-14
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 5  MASIAWKKLLSIVRLIFPSNVNAKRLSSTPDIDGMKPKRPPPRPSDDPAHAAPRNGNY 63
          MAS+ WKKLLSIVRLI PS  NAKRLSST DIDGMK K+ PPRP D+ + AAPRNGNY
Sbjct: 1  MASVVWKKLLSIVRLIVPSKANAKRLSSTNDIDGMKKKKFPPRPFDEESSAAPRNGNY 58

[Close]

BLAST of CmaCh16G001970 vs. ExPASy TrEMBL
Match: A0A5A7TSV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003960 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.8e-11
Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 6  ASIAWKKLLSIVRLIFPSNVNAKRLSSTPD-IDGMKPKRPPPRPSDDPAHAAPRNGNY 63
          +S  WKKLLSIVRLIFPS  NAKRLSST D IDGMK K+  PRP D+ + AAPRNGNY
Sbjct: 3  SSFVWKKLLSIVRLIFPSKANAKRLSSTNDNIDGMKKKKFLPRPFDEESSAAPRNGNY 60

[Close]

BLAST of CmaCh16G001970 vs. ExPASy TrEMBL
Match: A0A5D3CYY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00840 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.4e-10
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 6  ASIAWKKLLSIVRLIFPSNVNAKRLSSTPD-IDGMKPKRPPPRPSDDPAHAAPRNGNY 63
          +S  WKKLLSIVRLIFPS  NAKRLSST D ID MK K+  PRP D+ + AAPRNGNY
Sbjct: 3  SSFVWKKLLSIVRLIFPSKANAKRLSSTNDNIDSMKKKKFLPRPFDEESSAAPRNGNY 60

[Close]

BLAST of CmaCh16G001970 vs. NCBI nr
Match: KGN53138.1 (hypothetical protein Csa_014851 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-13
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 5  MASIAWKKLLSIVRLIFPSNVNAKRLSSTPDIDGMKPKRPPPRPSDDPAHAAPRNGNY 63
          MAS+ WKKLLSIVRLI PS  NAKRLSST DIDGMK K+ PPRP D+ + AAPRNGNY
Sbjct: 1  MASVVWKKLLSIVRLIVPSKANAKRLSSTNDIDGMKKKKFPPRPFDEESSAAPRNGNY 58

[Close]

BLAST of CmaCh16G001970 vs. NCBI nr
Match: KAA0044641.1 (hypothetical protein E6C27_scaffold46G003960 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 6  ASIAWKKLLSIVRLIFPSNVNAKRLSSTPD-IDGMKPKRPPPRPSDDPAHAAPRNGNY 63
          +S  WKKLLSIVRLIFPS  NAKRLSST D IDGMK K+  PRP D+ + AAPRNGNY
Sbjct: 3  SSFVWKKLLSIVRLIFPSKANAKRLSSTNDNIDGMKKKKFLPRPFDEESSAAPRNGNY 60

[Close]

BLAST of CmaCh16G001970 vs. NCBI nr
Match: TYK16947.1 (hypothetical protein E5676_scaffold130G00840 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 6.9e-10
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 6  ASIAWKKLLSIVRLIFPSNVNAKRLSSTPD-IDGMKPKRPPPRPSDDPAHAAPRNGNY 63
          +S  WKKLLSIVRLIFPS  NAKRLSST D ID MK K+  PRP D+ + AAPRNGNY
Sbjct: 3  SSFVWKKLLSIVRLIFPSKANAKRLSSTNDNIDSMKKKKFLPRPFDEESSAAPRNGNY 60

The following BLAST results are available for this feature:

BLAST of CmaCh16G001970 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh16G001970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUB7	8.5e-14	75.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022250 PE=4 SV=1	[more]
A0A5A7TSV2	6.8e-11	72.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CYY9	3.4e-10	70.69	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmaCh16G001970 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53138.1	1.8e-13	75.86	hypothetical protein Csa_014851 [Cucumis sativus]	[more]
KAA0044641.1	1.4e-10	72.41	hypothetical protein E6C27_scaffold46G003960 [Cucumis melo var. makuwa]	[more]
TYK16947.1	6.9e-10	70.69	hypothetical protein E5676_scaffold130G00840 [Cucumis melo var. makuwa]	[more]

BLAST of CmaCh16G001970 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G001970.1	CmaCh16G001970.1	mRNA