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CmaCh15G013970 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCACAGTCTGCAAGTTTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATGTGATAAAATCACGACCATCCCCTCGTAGTCTCGGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGATTGGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCAAGGAGGGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGCTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA ATGGCACAGTCTGCAAGTTTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATGTGATAAAATCACGACCATCCCCTCGTAGTCTCGGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGATTGGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCAAGGAGGGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGCTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA ATGGCACAGTCTGCAAGTTTAGTCTCTACTGGCCTCCTAAATTATGCCTTTACTCCTCAAAAGAATGCTTCATATTGGAGATATGATGTGATAAAATCACGACCATCCCCTCGTAGTCTCGGTATCAAAGCTGTGCAAGATACCGGAGGCCCTCGTAGGTTGGTTGATATCATTAGATTGGTGCCTGAGCTCTCGAGAAATTACTTTCGAAGTCCTTCAAGGAGGGCTCTCTTTGGAGGAATCTCTTTGTTGGGTGGCTTTTATGTGGCACAAACTATATCATTGTCGTTTGGAGCTTTGGGAGTAAATGATGTGATTGCTGCTGTGGTATGTGTTCTTCTTACTGAATATGTTACTCGCTTTTATTACAGTCGACCCAAAGTAACCTTCCCTGTTGCTCTGCTAAACAACTTCAAAATGGGATTCACTTATGGTCTTTTCATTGATGCTTTCAAACTTGCTAGTTAA MAQSASLVSTGLLNYAFTPQKNASYWRYDVIKSRPSPRSLGIKAVQDTGGPRRLVDIIRLVPELSRNYFRSPSRRALFGGISLLGGFYVAQTISLSFGALGVNDVIAAVVCVLLTEYVTRFYYSRPKVTFPVALLNNFKMGFTYGLFIDAFKLAS Homology
BLAST of CmaCh15G013970 vs. ExPASy Swiss-Prot
Match: Q1XDS2 (Uncharacterized protein ycf20 OS=Pyropia yezoensis OX=2788 GN=ycf20 PE=3 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 5.2e-09 Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = 0
BLAST of CmaCh15G013970 vs. ExPASy Swiss-Prot
Match: P72983 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1509 PE=3 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08 Identity = 37/105 (35.24%), Postives = 55/105 (52.38%), Query Frame = 0
BLAST of CmaCh15G013970 vs. ExPASy Swiss-Prot
Match: P51214 (Uncharacterized protein ycf20 OS=Porphyra purpurea OX=2787 GN=ycf20 PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 7.6e-08 Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = 0
BLAST of CmaCh15G013970 vs. ExPASy Swiss-Prot
Match: Q9MUL5 (Uncharacterized protein ycf20 OS=Mesostigma viride OX=41882 GN=ycf20 PE=3 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 3.9e-04 Identity = 30/82 (36.59%), Postives = 44/82 (53.66%), Query Frame = 0
BLAST of CmaCh15G013970 vs. ExPASy TrEMBL
Match: A0A6J1I440 (uncharacterized protein ycf20 OS=Cucurbita maxima OX=3661 GN=LOC111468994 PE=3 SV=1) HSP 1 Score: 305.4 bits (781), Expect = 1.3e-79 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
BLAST of CmaCh15G013970 vs. ExPASy TrEMBL
Match: A0A6J1ESY7 (uncharacterized protein ycf20 OS=Cucurbita moschata OX=3662 GN=LOC111435716 PE=3 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 1.4e-78 Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0
BLAST of CmaCh15G013970 vs. ExPASy TrEMBL
Match: A0A0A0KPS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172820 PE=3 SV=1) HSP 1 Score: 282.3 bits (721), Expect = 1.2e-72 Identity = 143/156 (91.67%), Postives = 148/156 (94.87%), Query Frame = 0
BLAST of CmaCh15G013970 vs. ExPASy TrEMBL
Match: A0A1S3CT33 (uncharacterized protein ycf20 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504644 PE=3 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71 Identity = 141/156 (90.38%), Postives = 148/156 (94.87%), Query Frame = 0
BLAST of CmaCh15G013970 vs. ExPASy TrEMBL
Match: A0A5D3BMH1 (Ycf20-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00540 PE=3 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 5.9e-64 Identity = 127/135 (94.07%), Postives = 131/135 (97.04%), Query Frame = 0
BLAST of CmaCh15G013970 vs. NCBI nr
Match: XP_022969949.1 (uncharacterized protein ycf20 [Cucurbita maxima] >XP_022969950.1 uncharacterized protein ycf20 [Cucurbita maxima]) HSP 1 Score: 305.4 bits (781), Expect = 2.7e-79 Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0
BLAST of CmaCh15G013970 vs. NCBI nr
Match: XP_022928979.1 (uncharacterized protein ycf20 [Cucurbita moschata] >XP_022928980.1 uncharacterized protein ycf20 [Cucurbita moschata]) HSP 1 Score: 302.0 bits (772), Expect = 3.0e-78 Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0
BLAST of CmaCh15G013970 vs. NCBI nr
Match: XP_023549885.1 (uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo] >XP_023549886.1 uncharacterized protein LOC111808248 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 301.2 bits (770), Expect = 5.1e-78 Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0
BLAST of CmaCh15G013970 vs. NCBI nr
Match: KAG6579671.1 (hypothetical protein SDJN03_24119, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 300.1 bits (767), Expect = 1.1e-77 Identity = 152/155 (98.06%), Postives = 154/155 (99.35%), Query Frame = 0
BLAST of CmaCh15G013970 vs. NCBI nr
Match: KAG7017120.1 (putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74 Identity = 145/149 (97.32%), Postives = 148/149 (99.33%), Query Frame = 0
BLAST of CmaCh15G013970 vs. TAIR 10
Match: AT5G43050.1 (Protein of unknown function (DUF565) ) HSP 1 Score: 201.8 bits (512), Expect = 3.9e-52 Identity = 109/158 (68.99%), Postives = 124/158 (78.48%), Query Frame = 0
BLAST of CmaCh15G013970 vs. TAIR 10
Match: AT1G65420.1 (Protein of unknown function (DUF565) ) HSP 1 Score: 43.9 bits (102), Expect = 1.4e-04 Identity = 29/80 (36.25%), Postives = 39/80 (48.75%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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