CmaCh15G006300 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh15G006300
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr15: 2977475 .. 2978217 (-)
RNA-Seq Expression	CmaCh15G006300
Synteny	CmaCh15G006300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTAAAAGCTTTTCCACACCGCTCTCATGGCTGCCACGTCCCTGTTTGCTTCGCTGGCATCGCCCCCCACCCATCTCCCCCTATAAATTACACCACTCCCTCCCACCACCACCACCACCAACACCACCACCACCACTTCCGCCCACCCAAAATGGGAAGCAAACACCCTTCCAAGCTACCCAAACCCGTCGCCAAAGCCCCTTCCAAGCTTCAACGATCTCTGTCCACGGCCTCCGAGCCAAGGAACACCAAGCAATACCAGATGGTAAGTCACCCTCTTCTTCACACTAATCATTAACCCCTTTTATACTCACCCTTTTGCTTGTTTGATTGTTTTGTGTCACAGGCCATCGCGTCCATGCAGGCCATGGAGAAACAGAGCCGCGCCGGAATCAATGTAAAATCAACCCATCAAAATCTAGCCTCTTTGCTCTGCCATTGTCTTATGCGGTTTGTTTTTGTGTATAGGCTCTACTGAGAGGAGTCGCCAATGGACAAGCTGATCGTGAAGGTGGGACCCCCGGTGCTTCAGCGTCGGTCAACTTTCCGGCGTGATACATGACAAACTAGTCGCCGCCAGATGCCCCAACCGGCCGGAGTTGCTTTTTCGTTTGCTTGTTTGCTGGTTTGTTTTTCTCCATATGTTGTGCGTGTTATGTTTAATGAACTTATGTTATGTGTGTGTACTCTCACGTGCTTTGCACGTGTTTTTAATAATAAATAATGCTTGTTTGTTGGGGTG

mRNA sequence

ATGTAAAAGCTTTTCCACACCGCTCTCATGGCTGCCACGTCCCTGTTTGCTTCGCTGGCATCGCCCCCCACCCATCTCCCCCTATAAATTACACCACTCCCTCCCACCACCACCACCACCAACACCACCACCACCACTTCCGCCCACCCAAAATGGGAAGCAAACACCCTTCCAAGCTACCCAAACCCGTCGCCAAAGCCCCTTCCAAGCTTCAACGATCTCTGTCCACGGCCTCCGAGCCAAGGAACACCAAGCAATACCAGATGGCCATCGCGTCCATGCAGGCCATGGAGAAACAGAGCCGCGCCGGAATCAATGCTCTACTGAGAGGAGTCGCCAATGGACAAGCTGATCGTGAAGGTGGGACCCCCGGTGCTTCAGCGTCGGTCAACTTTCCGGCGTGATACATGACAAACTAGTCGCCGCCAGATGCCCCAACCGGCCGGAGTTGCTTTTTCGTTTGCTTGTTTGCTGGTTTGTTTTTCTCCATATGTTGTGCGTGTTATGTTTAATGAACTTATGTTATGTGTGTGTACTCTCACGTGCTTTGCACGTGTTTTTAATAATAAATAATGCTTGTTTGTTGGGGTG

Coding sequence (CDS)

ATGGGAAGCAAACACCCTTCCAAGCTACCCAAACCCGTCGCCAAAGCCCCTTCCAAGCTTCAACGATCTCTGTCCACGGCCTCCGAGCCAAGGAACACCAAGCAATACCAGATGGCCATCGCGTCCATGCAGGCCATGGAGAAACAGAGCCGCGCCGGAATCAATGCTCTACTGAGAGGAGTCGCCAATGGACAAGCTGATCGTGAAGGTGGGACCCCCGGTGCTTCAGCGTCGGTCAACTTTCCGGCGTGA

Protein sequence

MGSKHPSKLPKPVAKAPSKLQRSLSTASEPRNTKQYQMAIASMQAMEKQSRAGINALLRGVANGQADREGGTPGASASVNFPA

Homology

[Close]

BLAST of CmaCh15G006300 vs. NCBI nr
Match: KAG6578921.1 (hypothetical protein SDJN03_23369, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.1 bits (370), Expect = 6.6e-32
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MGSKHPSKLPKPVAKAPSKLQRSLSTASEPRNTKQYQMAIASMQAMEKQSRAGINALLRG 60
          MGSKHPSKLPKPVAKAPSKLQRSLSTASEPRNT+QYQMAIASMQAMEKQSRAGINALL G
Sbjct: 1  MGSKHPSKLPKPVAKAPSKLQRSLSTASEPRNTQQYQMAIASMQAMEKQSRAGINALLSG 60

Query: 61 VANGQADREGGTPGASASVNFPA 84
          VANGQADREGGTPGAS  VNFPA
Sbjct: 61 VANGQADREGGTPGASPPVNFPA 83

[Close]

BLAST of CmaCh15G006300 vs. NCBI nr
Match: KAG7016443.1 (hypothetical protein SDJN02_21552, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 130.2 bits (326), Expect = 8.3e-27
Identity = 78/109 (71.56%), Postives = 79/109 (72.48%), Query Frame = 0


Query: 1   MGSKHPSKLPKPVAKAPSKLQRSLSTASEPRNTKQYQM---------------------- 60
           MGSKHPSKLPKPVAKAPSKLQRS STASEPRNT+QYQM                      
Sbjct: 1   MGSKHPSKLPKPVAKAPSKLQRSPSTASEPRNTQQYQMASSKGFMPIDLVFLTYKPWSFS 60

Query: 61  ----AIASMQAMEKQSRAGINALLRGVANGQADREGGTPGASASVNFPA 84
               AIASMQAMEKQSRAGINALL GVANGQADREGGTPGAS  VNFPA
Sbjct: 61  KLADAIASMQAMEKQSRAGINALLSGVANGQADREGGTPGASPPVNFPA 109

[Close]

BLAST of CmaCh15G006300 vs. NCBI nr
Match: KAE8647188.1 (hypothetical protein Csa_019045, partial [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 4.5e-04
Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 17  PSKLQRSLSTASEPRNTKQYQMAIASMQAMEKQSRAGIN----------ALLRGVANGQA 76
           PS+L+RSLS  SEPR  +QY+MAIASMQAMEKQ  AG+N              G   G+ 
Sbjct: 46  PSRLERSLSLTSEPRTLRQYEMAIASMQAMEKQRLAGMNNGIFLQTTTPTTTTGGTKGKV 105

Query: 77  DREGGTPGASA 78
           D E G  G +A
Sbjct: 106 DGEEGASGGAA 116

[Close]

BLAST of CmaCh15G006300 vs. NCBI nr
Match: XP_031743959.1 (mini-chromosome maintenance complex-binding protein-like [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 4.5e-04
Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 17 PSKLQRSLSTASEPRNTKQYQMAIASMQAMEKQSRAGIN----------ALLRGVANGQA 76
          PS+L+RSLS  SEPR  +QY+MAIASMQAMEKQ  AG+N              G   G+ 
Sbjct: 21 PSRLERSLSLTSEPRTLRQYEMAIASMQAMEKQRLAGMNNGIFLQTTTPTTTTGGTKGKV 80

Query: 77 DREGGTPGASA 78
          D E G  G +A
Sbjct: 81 DGEEGASGGAA 91

The following BLAST results are available for this feature:

BLAST of CmaCh15G006300 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh15G006300 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh15G006300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578921.1	6.6e-32	95.18	hypothetical protein SDJN03_23369, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016443.1	8.3e-27	71.56	hypothetical protein SDJN02_21552, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8647188.1	4.5e-04	49.30	hypothetical protein Csa_019045, partial [Cucumis sativus]	[more]
XP_031743959.1	4.5e-04	49.30	mini-chromosome maintenance complex-binding protein-like [Cucumis sativus]	[more]

BLAST of CmaCh15G006300 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G006300.1	CmaCh15G006300.1	mRNA