CmaCh15G006080 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh15G006080
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr15: 2882118 .. 2883150 (-)
RNA-Seq ExpressionCmaCh15G006080
SyntenyCmaCh15G006080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTTAAAAGCAAGTGGGAGAGGTTTGTTTAAAGGCATAACGAAGAAAGGATCAAAAAAGGGGAAATGGGGTATTCGACGGCCAATCTAATGTTTGGTATTTTGGTAGCATCCATCGCTCTAAGGCTGCCGTTGGAAGGCAGGGCAAGCGCCATGGTTGGCCCTTCTCCTCTGCCACCGCCGACATGCCATACACCTTCAGGGAAGCTATTATTTCGCCGCCCCATAAAAGTTAGCCTTACAGGGAAGGCTAGTGGAGAAGCTGAAGCTGAAGCACCATCGTCCAAGGATGAAAAGGGTCGGAGAAAACCATGGCCAAAGCAACCTGTCCCTAAAGCGCCACCACCTCCATTTTAGAAGCCGAAACAAACTGACGCTCGCATAGTATGTCTTTTATCGTCTTCTATAGTAACATATATATACGTATCGTTTTTATATAATATCACAGTTAAGTATAGTTCAAGTATGGTTAATTAAAGATTCGAGGTTCAAATTTTTATACTATGCTCTAACTAAAATAACTATGCATGCAAGAGTAAGATGTTCGAGAAAGTATTATAATGTGAATAGTGTTGGTTGACCGCCGTCATGGGTTCAATATTACATTTGATTTTAAGTATTTAAAAATATAATTTTTTTTTTTTTTTTGGAACGAACAAATTACAACGTTCTATATTGCGTCATGAAATGAACATTAACCAAGTATTTGTGATTAATACTCAATTTAGTTCTATCGTATTGCAACTCTTAATTTTGTTAGTCCTATGATTCGTATCAATTTCATTTTTATAGTTTTGACGCTTTTAAATTATTTGTACGTGAAATCCTACTTAATTTTTTTTTTTTTTTTGTATAATTTTATTCTAACCAAGAAAATCAGCCGTAATTTGTTGCATTTTGTAATTAATTAAATTTTATGAAGCGATTAACAAATATTACAAATGTCGACCAATTTTAACGACTGTCATATTTATTTGGTATTCAATTCGTGTTGAGTTAGGCAAGTGAGAATAAAAAGCAGCGATAGATAG

mRNA sequence

ATGCGTTTAAAAGCAAGTGGGAGAGCATCCATCGCTCTAAGGCTGCCGTTGGAAGGCAGGGCAAGCGCCATGGTTGGCCCTTCTCCTCTGCCACCGCCGACATGCCATACACCTTCAGGGAAGCTATTATTTCGCCGCCCCATAAAAAAGCCGAAACAAACTGACGCTCGCATAGTATGTCTTTTATCGTCTTCTATAGTAACATATATATACGTATCGTTTTTATATAATATCACAGTTAAGTATAGTTCAAGTATGTTCTATCGTATTGCAACTCTTAATTTTGTTAGTCCTATGATTCGTATCAATTTCATTTTTATAGTTTTGACGCTTTTAAATTATTTGCAAGTGAGAATAAAAAGCAGCGATAGATAG

Coding sequence (CDS)

ATGCGTTTAAAAGCAAGTGGGAGAGCATCCATCGCTCTAAGGCTGCCGTTGGAAGGCAGGGCAAGCGCCATGGTTGGCCCTTCTCCTCTGCCACCGCCGACATGCCATACACCTTCAGGGAAGCTATTATTTCGCCGCCCCATAAAAAAGCCGAAACAAACTGACGCTCGCATAGTATGTCTTTTATCGTCTTCTATAGTAACATATATATACGTATCGTTTTTATATAATATCACAGTTAAGTATAGTTCAAGTATGTTCTATCGTATTGCAACTCTTAATTTTGTTAGTCCTATGATTCGTATCAATTTCATTTTTATAGTTTTGACGCTTTTAAATTATTTGCAAGTGAGAATAAAAAGCAGCGATAGATAG

Protein sequence

MRLKASGRASIALRLPLEGRASAMVGPSPLPPPTCHTPSGKLLFRRPIKKPKQTDARIVCLLSSSIVTYIYVSFLYNITVKYSSSMFYRIATLNFVSPMIRINFIFIVLTLLNYLQVRIKSSDR
Homology
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BLAST of CmaCh15G006080 vs. NCBI nr
Match: KAG6578898.1 (hypothetical protein SDJN03_23346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 2.5e-11
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 9  ASIALRLPLEGRASAMVGPSPLPPPTCHTPSGKLLFRRPIK 50
          ASIALRLPLE RASAMVGPSPLPPPTCH+PSG+LLFRRPIK
Sbjct: 15 ASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIK 55

The following BLAST results are available for this feature:
BLAST of CmaCh15G006080 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G006080 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh15G006080 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6578898.12.5e-1192.68hypothetical protein SDJN03_23346, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh15G006080 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G006080.1CmaCh15G006080.1mRNA