CmaCh15G004220 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh15G004220
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Chlorophyll A-B binding protein
Location	Cma_Chr15: 1890924 .. 1891472 (-)
RNA-Seq Expression	CmaCh15G004220
Synteny	CmaCh15G004220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAATTCCATCTTCCTCACTGCAATTCCCAAACTCCCTCGCACTCGCTTCCAATTCCAAGCCTCACAAGCCGAAGACTCTCACCTTCGTAATCAGAGCAGCAGATCCGGAATCTCCTGCCGCCGATTCGGAACCTAGATCGGACGGCGACGATTTCGAGGACCGACTGGCCCGACTCCAACTCCGACGCGGAACGGGAAAGAAGGCAGAGATTCGTAAGGCTCGGAAGTCCAGGAAAGGATCAACCGCCGCCGCCTCGTCAGTGTATCTCCCGCCAGTGCCGCTGAAGGAAGCGGTTTCCGGCGGACTTAAGGTAGAATTTGGATTCAGTCCGTACAGCGAGAGGATCAATGGATGGATTGCGATACTCGGATTATGGGCACTGGTTCTAGTGGAATTAGCCACTGGAAAAGGCGTCATCAATTACCACACGCCAGCGATTATACTGATTCAAGCATACTTCGTAGCGGCGGCGGCTGCTCTGTATATCAAATACGAGAAGGAGAAGGTTAGCGTTTGGCCGCAAGATGAAATCAAAAGTTAA

mRNA sequence

ATGGCGGCAATTCCATCTTCCTCACTGCAATTCCCAAACTCCCTCGCACTCGCTTCCAATTCCAAGCCTCACAAGCCGAAGACTCTCACCTTCGTAATCAGAGCAGCAGATCCGGAATCTCCTGCCGCCGATTCGGAACCTAGATCGGACGGCGACGATTTCGAGGACCGACTGGCCCGACTCCAACTCCGACGCGGAACGGGAAAGAAGGCAGAGATTCGTAAGGCTCGGAAGTCCAGGAAAGGATCAACCGCCGCCGCCTCGTCAGTGTATCTCCCGCCAGTGCCGCTGAAGGAAGCGGTTTCCGGCGGACTTAAGGTAGAATTTGGATTCAGTCCGTACAGCGAGAGGATCAATGGATGGATTGCGATACTCGGATTATGGGCACTGGTTCTAGTGGAATTAGCCACTGGAAAAGGCGTCATCAATTACCACACGCCAGCGATTATACTGATTCAAGCATACTTCGTAGCGGCGGCGGCTGCTCTGTATATCAAATACGAGAAGGAGAAGGTTAGCGTTTGGCCGCAAGATGAAATCAAAAGTTAA

Coding sequence (CDS)

ATGGCGGCAATTCCATCTTCCTCACTGCAATTCCCAAACTCCCTCGCACTCGCTTCCAATTCCAAGCCTCACAAGCCGAAGACTCTCACCTTCGTAATCAGAGCAGCAGATCCGGAATCTCCTGCCGCCGATTCGGAACCTAGATCGGACGGCGACGATTTCGAGGACCGACTGGCCCGACTCCAACTCCGACGCGGAACGGGAAAGAAGGCAGAGATTCGTAAGGCTCGGAAGTCCAGGAAAGGATCAACCGCCGCCGCCTCGTCAGTGTATCTCCCGCCAGTGCCGCTGAAGGAAGCGGTTTCCGGCGGACTTAAGGTAGAATTTGGATTCAGTCCGTACAGCGAGAGGATCAATGGATGGATTGCGATACTCGGATTATGGGCACTGGTTCTAGTGGAATTAGCCACTGGAAAAGGCGTCATCAATTACCACACGCCAGCGATTATACTGATTCAAGCATACTTCGTAGCGGCGGCGGCTGCTCTGTATATCAAATACGAGAAGGAGAAGGTTAGCGTTTGGCCGCAAGATGAAATCAAAAGTTAA

Protein sequence

MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLARLQLRRGTGKKAEIRKARKSRKGSTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERINGWIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQDEIKS

Homology

[Close]

BLAST of CmaCh15G004220 vs. ExPASy TrEMBL
Match: A0A6J1JUJ1 (uncharacterized protein LOC111489022 OS=Cucurbita maxima OX=3661 GN=LOC111489022 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.6e-92
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLAR 60
           MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLAR
Sbjct: 1   MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLAR 60

Query: 61  LQLRRGTGKKAEIRKARKSRKGSTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERING 120
           LQLRRGTGKKAEIRKARKSRKGSTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERING
Sbjct: 61  LQLRRGTGKKAEIRKARKSRKGSTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERING 120

Query: 121 WIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQDEI 180
           WIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQDEI
Sbjct: 121 WIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQDEI 180

Query: 181 KS 183
           KS
Sbjct: 181 KS 182

[Close]

BLAST of CmaCh15G004220 vs. ExPASy TrEMBL
Match: A0A6J1FK14 (uncharacterized protein LOC111444734 OS=Cucurbita moschata OX=3662 GN=LOC111444734 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 7.6e-87
Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLAR 60
           MAAIPSSSLQFPNSLALA NSKPHKPK+LTFV RAADPESPAADSEPRSDGDDFEDRLAR
Sbjct: 1   MAAIPSSSLQFPNSLALAFNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR 60

Query: 61  LQLRRGTGKKAEIRKARKSRKGS-TAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120
           LQLRRGTGKKAEIRKARKSRKGS TAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN
Sbjct: 61  LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120

Query: 121 GWIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQDE 180
           GWIAILGL ALVLVELATGKGVINYHTPAIILIQ YFVAAAAALYIKYEKEKVSVWPQDE
Sbjct: 121 GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE 180

Query: 181 IKS 183
           IKS
Sbjct: 181 IKS 183

[Close]

BLAST of CmaCh15G004220 vs. ExPASy TrEMBL
Match: A0A0A0KS45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505130 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.7e-75
Identity = 158/185 (85.41%), Postives = 166/185 (89.73%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSE-PRSDGDDFEDRLA 60
           MAAIPSSSLQFPNSL L SNSKP KPK LTF+ RAADPESPA DSE P SDGDDFEDRLA
Sbjct: 1   MAAIPSSSLQFPNSLTLPSNSKPPKPKLLTFLTRAADPESPAGDSEQPGSDGDDFEDRLA 60

Query: 61  --RLQLRRGTGKKAEIRKARKSRKGSTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSER 120
             R++ R GTGKKAEIRKARKS++GST AASSVYLPPV LKEAVSGGLKVEFGFSPYSER
Sbjct: 61  KVRIRYRSGTGKKAEIRKARKSKQGSTTAASSVYLPPVSLKEAVSGGLKVEFGFSPYSER 120

Query: 121 INGWIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQ 180
           INGWIAILG+ ALVLVELATGK VI+YHTPAIILIQ YFVAA AA+YIKYEKEKVSVWP 
Sbjct: 121 INGWIAILGISALVLVELATGKSVISYHTPAIILIQVYFVAAVAAVYIKYEKEKVSVWPS 180

Query: 181 DEIKS 183
           DEIKS
Sbjct: 181 DEIKS 185

[Close]

BLAST of CmaCh15G004220 vs. ExPASy TrEMBL
Match: A0A6J1BZH5 (uncharacterized protein LOC111006119 OS=Momordica charantia OX=3673 GN=LOC111006119 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.5e-74
Identity = 155/186 (83.33%), Postives = 166/186 (89.25%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLA- 60
           MAAIPSSSLQFPNSL   SNSKPHK K LTFV RAADPE+PAAD EP SDGDDFE+RLA 
Sbjct: 1   MAAIPSSSLQFPNSLPFPSNSKPHKTKPLTFVTRAADPETPAADPEPGSDGDDFENRLAK 60

Query: 61  -RLQLRRGTGKKAEIRKARKSRKGSTAAA--SSVYLPPVPLKEAVSGGLKVEFGFSPYSE 120
            RL+ R GTGKKAEIRKARKS KGSTA A  SSVYLPPVPLKEAVSGGLKVEFGFSP+SE
Sbjct: 61  VRLKYRSGTGKKAEIRKARKSNKGSTAGAGGSSVYLPPVPLKEAVSGGLKVEFGFSPFSE 120

Query: 121 RINGWIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWP 180
           RINGWIAILG+ ALVLVELATGKGVINYHTPAIILIQ YFVAA AA+Y+K+EKEKVSVWP
Sbjct: 121 RINGWIAILGISALVLVELATGKGVINYHTPAIILIQVYFVAAVAAVYVKFEKEKVSVWP 180

Query: 181 QDEIKS 183
            +E+K+
Sbjct: 181 PEEVKN 186

[Close]

BLAST of CmaCh15G004220 vs. ExPASy TrEMBL
Match: A0A5D3C1D6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002400 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.3e-74
Identity = 156/185 (84.32%), Postives = 165/185 (89.19%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSE-PRSDGDDFEDRLA 60
           MAAIPSSSLQFPNSL L SNSK HKP+ LTF+ RAADPES  +DSE P SDGDDFEDRLA
Sbjct: 1   MAAIPSSSLQFPNSLTLPSNSKSHKPRLLTFLTRAADPESTPSDSEQPGSDGDDFEDRLA 60

Query: 61  --RLQLRRGTGKKAEIRKARKSRKGSTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSER 120
             R + R GTGKKAEIRKARKS+KGST AASSVYLPPVPLKE VSGGLKVEFGFSPYSER
Sbjct: 61  KVRFRYRSGTGKKAEIRKARKSKKGSTTAASSVYLPPVPLKEPVSGGLKVEFGFSPYSER 120

Query: 121 INGWIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQ 180
           INGWIAILG+ ALVLVELATGK VI+YHTPAIILIQ YFVAA AA+YIKYEKEKVSVWP+
Sbjct: 121 INGWIAILGISALVLVELATGKSVISYHTPAIILIQVYFVAAVAAVYIKYEKEKVSVWPR 180

Query: 181 DEIKS 183
           DEIKS
Sbjct: 181 DEIKS 185

[Close]

BLAST of CmaCh15G004220 vs. NCBI nr
Match: XP_022992796.1 (uncharacterized protein LOC111489022 [Cucurbita maxima])

HSP 1 Score: 347.1 bits (889), Expect = 9.5e-92
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLAR 60
           MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLAR
Sbjct: 1   MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLAR 60

Query: 61  LQLRRGTGKKAEIRKARKSRKGSTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERING 120
           LQLRRGTGKKAEIRKARKSRKGSTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERING
Sbjct: 61  LQLRRGTGKKAEIRKARKSRKGSTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERING 120

Query: 121 WIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQDEI 180
           WIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQDEI
Sbjct: 121 WIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQDEI 180

Query: 181 KS 183
           KS
Sbjct: 181 KS 182

[Close]

BLAST of CmaCh15G004220 vs. NCBI nr
Match: XP_023550096.1 (uncharacterized protein LOC111808391 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 335.1 bits (858), Expect = 3.7e-88
Identity = 177/182 (97.25%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLAR 60
           MAAIPSSSLQFPNSLA ASNSKPHKPK+LTFV RAADPESPAADSEPRSDGDDFEDRLAR
Sbjct: 1   MAAIPSSSLQFPNSLAFASNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR 60

Query: 61  LQLRRGTGKKAEIRKARKSRKGSTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERING 120
           LQLRRGTGKKAEIRKARKSRKGSTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERING
Sbjct: 61  LQLRRGTGKKAEIRKARKSRKGSTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERING 120

Query: 121 WIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQDEI 180
           WIAILGL ALVLVELATGKGVINYHTPAIILIQ YFVAAAAALYIKYEKEKVSVWPQDEI
Sbjct: 121 WIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDEI 180

Query: 181 KS 183
           KS
Sbjct: 181 KS 182

[Close]

BLAST of CmaCh15G004220 vs. NCBI nr
Match: KAG6578732.1 (hypothetical protein SDJN03_23180, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016262.1 hypothetical protein SDJN02_21368, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 332.0 bits (850), Expect = 3.2e-87
Identity = 178/183 (97.27%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLAR 60
           MAAIPSSSLQFPNSLALASNSKPHKPK+LTFV RAADPESPAADSEPRSDGDDFEDRLAR
Sbjct: 1   MAAIPSSSLQFPNSLALASNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR 60

Query: 61  LQLRRGTGKKAEIRKARKSRKGS-TAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120
           LQLRRGTGKKAEIRKARKSRKGS TAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN
Sbjct: 61  LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120

Query: 121 GWIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQDE 180
           GWIAILGL ALVLVELATGKGVINYHTPAIILIQ YFVAAAAALYIKYEKEKVSVWPQDE
Sbjct: 121 GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE 180

Query: 181 IKS 183
           IKS
Sbjct: 181 IKS 183

[Close]

BLAST of CmaCh15G004220 vs. NCBI nr
Match: XP_022938525.1 (uncharacterized protein LOC111444734 [Cucurbita moschata])

HSP 1 Score: 329.7 bits (844), Expect = 1.6e-86
Identity = 177/183 (96.72%), Postives = 178/183 (97.27%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLAR 60
           MAAIPSSSLQFPNSLALA NSKPHKPK+LTFV RAADPESPAADSEPRSDGDDFEDRLAR
Sbjct: 1   MAAIPSSSLQFPNSLALAFNSKPHKPKSLTFVTRAADPESPAADSEPRSDGDDFEDRLAR 60

Query: 61  LQLRRGTGKKAEIRKARKSRKGS-TAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120
           LQLRRGTGKKAEIRKARKSRKGS TAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN
Sbjct: 61  LQLRRGTGKKAEIRKARKSRKGSTTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERIN 120

Query: 121 GWIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQDE 180
           GWIAILGL ALVLVELATGKGVINYHTPAIILIQ YFVAAAAALYIKYEKEKVSVWPQDE
Sbjct: 121 GWIAILGLSALVLVELATGKGVINYHTPAIILIQVYFVAAAAALYIKYEKEKVSVWPQDE 180

Query: 181 IKS 183
           IKS
Sbjct: 181 IKS 183

[Close]

BLAST of CmaCh15G004220 vs. NCBI nr
Match: XP_038890345.1 (uncharacterized protein LOC120079944 [Benincasa hispida])

HSP 1 Score: 290.8 bits (743), Expect = 8.1e-75
Identity = 160/184 (86.96%), Postives = 164/184 (89.13%), Query Frame = 0


Query: 1   MAAIPSSSLQFPNSLALASNSKPHKPKTLTFVIRAADPESPAADSEPRSDGDDFEDRLA- 60
           MAAIPSSSLQFPNSL L     P KPK LTFV RAADPESPAADSE  SDGDDFEDRLA 
Sbjct: 1   MAAIPSSSLQFPNSLTL-----PRKPKLLTFVTRAADPESPAADSESGSDGDDFEDRLAK 60

Query: 61  -RLQLRRGTGKKAEIRKARKSRKGSTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERI 120
            RL+ R GTGKKAEIRKARKS+KGSTAA SSVYLPPVPLKEAVSGGLKVEFGFSPYSERI
Sbjct: 61  VRLRYRSGTGKKAEIRKARKSKKGSTAANSSVYLPPVPLKEAVSGGLKVEFGFSPYSERI 120

Query: 121 NGWIAILGLWALVLVELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQD 180
           NGWIAILG+ ALVLVELATGKGVINYHTPAIILIQ YFVAA AALYIKYEKEKVSVWP D
Sbjct: 121 NGWIAILGISALVLVELATGKGVINYHTPAIILIQVYFVAAVAALYIKYEKEKVSVWPPD 179

Query: 181 EIKS 183
           EIK+
Sbjct: 181 EIKN 179

[Close]

BLAST of CmaCh15G004220 vs. TAIR 10
Match: AT3G12345.1 (unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 174.5 bits (441), Expect = 7.9e-44
Identity = 96/165 (58.18%), Postives = 119/165 (72.12%), Query Frame = 0


Query: 25  KPKTL-TFVIRAAD--------PESPAADSEPRSDGDDFEDRLA--RLQLRRGTGKKAEI 84
           KP  L  F + A D        P+     SE  +D D FE RL+  RL+ R GTGKKAE+
Sbjct: 22  KPNALRIFTVHATDVESTEDTQPDPETTQSESGTDPDQFESRLSNIRLRYRSGTGKKAEV 81

Query: 85  RKARKSRKGSTAAASSVYLPPVPLKEAVSGGLKVEFGFSPYSERINGWIAILGLWALVLV 144
           RK++K   GS +  + +YLPPV LKEAVSGGLKVE GFSP+SERING IA LGL AL+LV
Sbjct: 82  RKSKKGSSGSPSKGTGIYLPPVSLKEAVSGGLKVEPGFSPFSERINGRIAGLGLTALLLV 141

Query: 145 ELATGKGVINYHTPAIILIQAYFVAAAAALYIKYEKEKVSVWPQD 179
           ELATGK V+NYHTP+++ +Q YFVAA +A+++K EKEKVSVWP+D
Sbjct: 142 ELATGKSVLNYHTPSVVFLQIYFVAAVSAMFVKIEKEKVSVWPKD 186

The following BLAST results are available for this feature:

BLAST of CmaCh15G004220 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh15G004220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JUJ1	4.6e-92	100.00	uncharacterized protein LOC111489022 OS=Cucurbita maxima OX=3661 GN=LOC111489022...	[more]
A0A6J1FK14	7.6e-87	96.72	uncharacterized protein LOC111444734 OS=Cucurbita moschata OX=3662 GN=LOC1114447...	[more]
A0A0A0KS45	6.7e-75	85.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505130 PE=4 SV=1	[more]
A0A6J1BZH5	2.5e-74	83.33	uncharacterized protein LOC111006119 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A5D3C1D6	4.3e-74	84.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CmaCh15G004220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992796.1	9.5e-92	100.00	uncharacterized protein LOC111489022 [Cucurbita maxima]	[more]
XP_023550096.1	3.7e-88	97.25	uncharacterized protein LOC111808391 [Cucurbita pepo subsp. pepo]	[more]
KAG6578732.1	3.2e-87	97.27	hypothetical protein SDJN03_23180, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938525.1	1.6e-86	96.72	uncharacterized protein LOC111444734 [Cucurbita moschata]	[more]
XP_038890345.1	8.1e-75	86.96	uncharacterized protein LOC120079944 [Benincasa hispida]	[more]

BLAST of CmaCh15G004220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12345.1	7.9e-44	58.18	unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..55
None	No IPR available	PANTHER	PTHR14154:SF15	FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 23..179
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 23..179
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 108..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh15G004220.1	CmaCh15G004220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane