CmaCh14G014330 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G014330
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionstress-associated endoplasmic reticulum protein 2-like
LocationCma_Chr14: 10996196 .. 10997990 (-)
RNA-Seq ExpressionCmaCh14G014330
SyntenyCmaCh14G014330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCGTGTAGATCCTGGAAAAAAAAAAAAAAAAATCCTGATTTGTTCGTTCATATATACATAAATCTGAAGAACTCGTCTCCATTTTTCTGCTCCAGATCAATTCCGCCTCCCAGATCTCCCACTCAGTAATGGTACTTTCTTTGTGTTTTTTTTCTCTCTGAATCATTCTTCTTCCTTGATCTTGATTCTTTCCCCTCTAGGGTTCTCTATTTTGAGATTTGATCTATAGATTTTTTTTTTTCTCATGAATTTGGCTCTGTTCCTTGTTGGTGTTTTGTTTGCGGATCTAACGTAATTGGCATTGTCGATTTATGATTTGATTTGATCGGTTTTGTAGACGACATCGCGGCGTCTTGCGGATCGGAAGGTGGAGAGGTTCGAGAAGAACATTTTGAAGAGAGGGGCCGTGCCCGAGACTACTACAAAGAAGGGAAAGGACTATCCTGTTGGTCCTCTTCTTCTTGGATTCTTCGTCTTTGTCGTCATTGGATCATGTGAGTATTTTCTTGGTCCGCGTTCCAGATTATGAATGATAGTTTCATCTGCTTATGCCTATGTTTTGATCTATTCTGAATTTCTATTATATGGCTCAAGATTCTGTGCGGTTGTTTTTCAATCATCATATATTTACCTTAATCTATCTAAAAAGAACATGATATCTAGAGGTCCTCTCTTCAAATTCTCATGAAGACCCAAAATGAAAGGTTGAGAATACATGTAATTATATATATGCCATAGATTTAATGAAACTGTAATATTTTTTTATAATGGTGTGTAGAAAGAATCATGGTAGCTATTAATCCGTCCATCTTGAGCTTAGAACGAGTCCAAAATTGTCCAGGATTCAATTCTATTCATACTTTTGTGGTTCAAAGATGGCCCCAGAACACAATTTTCATTTAAGATCATGAATGATTATGTTGAGGCCTTCTTAGCTAGTAATCCGTCCATCTTGAGCTTAGAATGAGTCCAAAATTGTCCAGGATTCAATTATATTCATACTTTTGTGGTTCAAAGATGGCCCCAGAACACAATTTTCATTTAAGATCATGAATGATTATATTGTTGAGGCCTTCCTGCAGTAGAAGTGGATTTTGGTTATGTGTCTGTGGGCTGATGTTTTGTTCCATTGTTGAATCTTGCAGCACTGTTTCAGATAATCCGGACGGCAACAGGTGGAGGAATGGCATGATGAGAGGCATCTTCAGTTCTGAGTGGGGTAGCAGAAGAGGCAAGACATGAGGTTAGGCTAGAACTTGTTGAGTTATTTGTTCTGTGTCTGTGCTACCCTGTAGGAGAAGTTTGGTAGTGTAGAAGGTAAAGAAGAGCATGGCCATTTATGGTCATCTTGTGAAGTACTTATTAAGAAAGTAAGCTAAATAAAATAACAGTGCGTTCACACACAAGTGCTATGCTATTATCCTATACATCTCATTCGTCCATTGTTGTTCTTCCTTCATGTCTTGATGATGATGATGATGATGATATCCAACTCTAAGGGGAACTTGTTTCTACATGTGGGTTTGGTAAAAAGGATGCTTTTTTTCAGTGGAAGTTTCTTCTTTTATAAGCACTCATGTATAGGGTAAGATTTTGAAATCTAGAAGGTAATGAAAAGTAATTTTATTTTTGCAATTCCAAGTGTAAAAATGTTATATTTTGAACTTCAGGGATCAAATAGAAAAATTTCTAATGTTCTATGCTTAGAGATCCCATCTTTAGCATATGACGTTTTCATTATTTTGATTTTCAATCGATATGACTTCTTCACTAGTCTCGACTAGTTGGTTGGGG

mRNA sequence

GCCGTGTAGATCCTGGAAAAAAAAAAAAAAAAATCCTGATTTGTTCGTTCATATATACATAAATCTGAAGAACTCGTCTCCATTTTTCTGCTCCAGATCAATTCCGCCTCCCAGATCTCCCACTCAGTAATGACGACATCGCGGCGTCTTGCGGATCGGAAGGTGGAGAGGTTCGAGAAGAACATTTTGAAGAGAGGGGCCGTGCCCGAGACTACTACAAAGAAGGGAAAGGACTATCCTGTTGGTCCTCTTCTTCTTGGATTCTTCGTCTTTGTCGTCATTGGATCATGTGACACTGTTTCAGATAATCCGGACGGCAACAGGTGGAGGAATGGCATGATGAGAGGCATCTTCAGTTCTGAGTGGGGTAGCAGAAGAGGCAAGACATGAGGTTAGGCTAGAACTTGTTGAGTTATTTGTTCTGTGTCTGTGCTACCCTGTAGGAGAAGTTTGGTAGTGTAGAAGGTAAAGAAGAGCATGGCCATTTATGGTCATCTTGTGAAGTACTTATTAAGAAAGTAAGCTAAATAAAATAACAGTGCGTTCACACACAAGTGCTATGCTATTATCCTATACATCTCATTCGTCCATTGTTGTTCTTCCTTCATGTCTTGATGATGATGATGATGATGATATCCAACTCTAAGGGGAACTTGTTTCTACATGTGGGTTTGGTAAAAAGGATGCTTTTTTTCAGTGGAAGTTTCTTCTTTTATAAGCACTCATGTATAGGGTAAGATTTTGAAATCTAGAAGGTAATGAAAAGTAATTTTATTTTTGCAATTCCAAGTGTAAAAATGTTATATTTTGAACTTCAGGGATCAAATAGAAAAATTTCTAATGTTCTATGCTTAGAGATCCCATCTTTAGCATATGACGTTTTCATTATTTTGATTTTCAATCGATATGACTTCTTCACTAGTCTCGACTAGTTGGTTGGGG

Coding sequence (CDS)

ATGACGACATCGCGGCGTCTTGCGGATCGGAAGGTGGAGAGGTTCGAGAAGAACATTTTGAAGAGAGGGGCCGTGCCCGAGACTACTACAAAGAAGGGAAAGGACTATCCTGTTGGTCCTCTTCTTCTTGGATTCTTCGTCTTTGTCGTCATTGGATCATGTGACACTGTTTCAGATAATCCGGACGGCAACAGGTGGAGGAATGGCATGATGAGAGGCATCTTCAGTTCTGAGTGGGGTAGCAGAAGAGGCAAGACATGA

Protein sequence

MTTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSCDTVSDNPDGNRWRNGMMRGIFSSEWGSRRGKT
Homology
BLAST of CmaCh14G014330 vs. ExPASy Swiss-Prot
Match: Q3T073 (Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-04
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 0

Query: 13 ERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGS 54
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGS 52

BLAST of CmaCh14G014330 vs. ExPASy Swiss-Prot
Match: Q8N6R1 (Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SERP2 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-04
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 0

Query: 13 ERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGS 54
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGS 52

BLAST of CmaCh14G014330 vs. ExPASy Swiss-Prot
Match: Q6TAW2 (Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Serp2 PE=3 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-04
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 0

Query: 13 ERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGS 54
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGS 52

BLAST of CmaCh14G014330 vs. ExPASy TrEMBL
Match: A0A5D3DYM9 (KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001010 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.7e-24
Identity = 66/83 (79.52%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 2   TTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSCDTVSDNP 61
           TTSRRLADRKVERFEKNILKRGAVPET TKKGKDYPVGP+LLGFFVFVVIGS      N 
Sbjct: 45  TTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGSY-----NQ 104

Query: 62  DGNRWRNGMMRGIFSS-EWGSRR 84
           D NRWRN  MR IF+S E GSR+
Sbjct: 105 DDNRWRN-EMRAIFNSDERGSRQ 121

BLAST of CmaCh14G014330 vs. ExPASy TrEMBL
Match: I1KS28 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_08G104900 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.2e-21
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 0

Query: 1  MTTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSCDTVSDN 60
          MTTSRRLADRKVE+FEKNI KRG VP+TTTKKGKDYPVGP+LLGFFVFVVIGS      N
Sbjct: 1  MTTSRRLADRKVEKFEKNITKRGFVPDTTTKKGKDYPVGPVLLGFFVFVVIGSY-----N 60

Query: 61 PDGNRWRNGMMRGIF 76
           D N WR+G+   +F
Sbjct: 61 QDSNEWRHGLNGALF 70

BLAST of CmaCh14G014330 vs. ExPASy TrEMBL
Match: A0A445JCR9 (Uncharacterized protein (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_020164 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.6e-21
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 0

Query: 2  TTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSCDTVSDNP 61
          TTSRRLADRKVE+FEKNI KRG VP+TTTKKGKDYPVGP+LLGFFVFVVIGS      N 
Sbjct: 1  TTSRRLADRKVEKFEKNITKRGFVPDTTTKKGKDYPVGPVLLGFFVFVVIGSY-----NQ 60

Query: 62 DGNRWRNGMMRGIF 76
          D N+WR+G+   +F
Sbjct: 61 DSNKWRHGLNGALF 69

BLAST of CmaCh14G014330 vs. ExPASy TrEMBL
Match: A0A6A6KV46 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_029713 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-20
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 0

Query: 2   TTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSCDTVSDNP 61
           TTSRRLADRKVE+FEKNI KRGAVPETTTKKGKDYPVGP+LLGFF+FVVIGS +T     
Sbjct: 68  TTSRRLADRKVEKFEKNITKRGAVPETTTKKGKDYPVGPVLLGFFIFVVIGSYNT----- 127

Query: 62  DGNRWRNGM 71
           D N+W +G+
Sbjct: 128 DSNKWGHGI 131

BLAST of CmaCh14G014330 vs. ExPASy TrEMBL
Match: A0A6A6KVE4 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_029922 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-20
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 0

Query: 2  TTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSCDTVSDNP 61
          TTSRRLADRKVE+FEKNI KRGAVPETTTKKGKDYPVGP+LLGFF+FVVIGS +T     
Sbjct: 7  TTSRRLADRKVEKFEKNITKRGAVPETTTKKGKDYPVGPVLLGFFIFVVIGSYNT----- 66

Query: 62 DGNRWRNGM 71
          D N+W +G+
Sbjct: 67 DSNKWGHGI 70

BLAST of CmaCh14G014330 vs. NCBI nr
Match: TYK28997.1 (KH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 1.2e-23
Identity = 66/83 (79.52%), Postives = 69/83 (83.13%), Query Frame = 0

Query: 2   TTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSCDTVSDNP 61
           TTSRRLADRKVERFEKNILKRGAVPET TKKGKDYPVGP+LLGFFVFVVIGS      N 
Sbjct: 45  TTSRRLADRKVERFEKNILKRGAVPETATKKGKDYPVGPILLGFFVFVVIGSY-----NQ 104

Query: 62  DGNRWRNGMMRGIFSS-EWGSRR 84
           D NRWRN  MR IF+S E GSR+
Sbjct: 105 DDNRWRN-EMRAIFNSDERGSRQ 121

BLAST of CmaCh14G014330 vs. NCBI nr
Match: XP_040873531.1 (ribosome associated membrane protein RAMP4 isoform X1 [Glycine max] >KRH42679.1 hypothetical protein GLYMA_08G104900v4 [Glycine max])

HSP 1 Score: 112.1 bits (279), Expect = 2.4e-21
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 0

Query: 1  MTTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSCDTVSDN 60
          MTTSRRLADRKVE+FEKNI KRG VP+TTTKKGKDYPVGP+LLGFFVFVVIGS      N
Sbjct: 1  MTTSRRLADRKVEKFEKNITKRGFVPDTTTKKGKDYPVGPVLLGFFVFVVIGSY-----N 60

Query: 61 PDGNRWRNGMMRGIF 76
           D N WR+G+   +F
Sbjct: 61 QDSNEWRHGLNGALF 70

BLAST of CmaCh14G014330 vs. NCBI nr
Match: RZB96231.1 (hypothetical protein D0Y65_020164, partial [Glycine soja])

HSP 1 Score: 110.9 bits (276), Expect = 5.4e-21
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 0

Query: 2  TTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSCDTVSDNP 61
          TTSRRLADRKVE+FEKNI KRG VP+TTTKKGKDYPVGP+LLGFFVFVVIGS      N 
Sbjct: 1  TTSRRLADRKVEKFEKNITKRGFVPDTTTKKGKDYPVGPVLLGFFVFVVIGSY-----NQ 60

Query: 62 DGNRWRNGMMRGIF 76
          D N+WR+G+   +F
Sbjct: 61 DSNKWRHGLNGALF 69

BLAST of CmaCh14G014330 vs. NCBI nr
Match: KAG7029119.1 (Stress-associated endoplasmic reticulum protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.4 bits (272), Expect = 1.6e-20
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1  MTTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSCD 56
          MTTSRR ADRKVERFEKNILKRGAVPET TKKGKDYPVGPLLLGFFVFVVIGSC+
Sbjct: 1  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSCE 55

BLAST of CmaCh14G014330 vs. NCBI nr
Match: KAF2292900.1 (hypothetical protein GH714_029713 [Hevea brasiliensis])

HSP 1 Score: 109.0 bits (271), Expect = 2.1e-20
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 0

Query: 2   TTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGSCDTVSDNP 61
           TTSRRLADRKVE+FEKNI KRGAVPETTTKKGKDYPVGP+LLGFF+FVVIGS +T     
Sbjct: 68  TTSRRLADRKVEKFEKNITKRGAVPETTTKKGKDYPVGPVLLGFFIFVVIGSYNT----- 127

Query: 62  DGNRWRNGM 71
           D N+W +G+
Sbjct: 128 DSNKWGHGI 131

BLAST of CmaCh14G014330 vs. TAIR 10
Match: AT1G27350.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 101.3 bits (251), Expect = 4.0e-22
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1  MTTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGS 54
          MTTS+RLADRK+E+F+KNILKRG VPETTTKKGKDYPVGP+LLGFFVFVVIGS
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGS 53

BLAST of CmaCh14G014330 vs. TAIR 10
Match: AT1G27330.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 101.3 bits (251), Expect = 4.0e-22
Identity = 47/53 (88.68%), Postives = 52/53 (98.11%), Query Frame = 0

Query: 1  MTTSRRLADRKVERFEKNILKRGAVPETTTKKGKDYPVGPLLLGFFVFVVIGS 54
          MTTS+RLADRK+E+F+KNILKRG VPETTTKKGKDYPVGP+LLGFFVFVVIGS
Sbjct: 1  MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGS 53

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q3T0732.2e-0453.66Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2... [more]
Q8N6R12.2e-0453.66Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SER... [more]
Q6TAW22.2e-0453.66Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Se... [more]
Match NameE-valueIdentityDescription
A0A5D3DYM95.7e-2479.52KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
I1KS281.2e-2173.33Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_08G104900 PE=3 SV=1[more]
A0A445JCR92.6e-2172.97Uncharacterized protein (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_020164 PE=3 ... [more]
A0A6A6KV461.0e-2076.81Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_029713 PE=3 SV=1[more]
A0A6A6KVE41.0e-2076.81Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_029922 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
TYK28997.11.2e-2379.52KH domain-containing protein [Cucumis melo var. makuwa][more]
XP_040873531.12.4e-2173.33ribosome associated membrane protein RAMP4 isoform X1 [Glycine max] >KRH42679.1 ... [more]
RZB96231.15.4e-2172.97hypothetical protein D0Y65_020164, partial [Glycine soja][more]
KAG7029119.11.6e-2094.55Stress-associated endoplasmic reticulum protein 2, partial [Cucurbita argyrosper... [more]
KAF2292900.12.1e-2076.81hypothetical protein GH714_029713 [Hevea brasiliensis][more]
Match NameE-valueIdentityDescription
AT1G27350.14.0e-2288.68Ribosome associated membrane protein RAMP4 [more]
AT1G27330.14.0e-2288.68Ribosome associated membrane protein RAMP4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010580Stress-associated endoplasmic reticulum proteinPFAMPF06624RAMP4coord: 5..53
e-value: 4.7E-19
score: 68.1
IPR010580Stress-associated endoplasmic reticulum proteinPANTHERPTHR15601STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4coord: 1..54
NoneNo IPR availablePANTHERPTHR15601:SF23OS11G0637501 PROTEINcoord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G014330.1CmaCh14G014330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030968 endoplasmic reticulum unfolded protein response
biological_process GO:0006486 protein glycosylation
biological_process GO:0006605 protein targeting
biological_process GO:0071806 protein transmembrane transport
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005783 endoplasmic reticulum
molecular_function GO:0008320 protein transmembrane transporter activity
molecular_function GO:0003723 RNA binding