CmaCh14G010480 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G010480
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Mediator of RNA polymerase II transcription subunit 37f
Location	Cma_Chr14: 5509803 .. 5512384 (-)
RNA-Seq Expression	CmaCh14G010480
Synteny	CmaCh14G010480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTCCCTAATCCCAATTACGTCACACAACTACGGATTCAGTGGCCTCGCATGTCACACAAATCTCCATTAACTTCAGCGCCGGAGAAGCTTCGAGCCCCACAATCGCGATTTTGATCATTGTCAAACCCCAATTACCGAGTGGAGCAAATGGGGATTTTGACACCTTACATAAGTCAAAAGGATATACAGAGGAAATGGGCATTTTTACATGTTTCTTTCTGCGGCAATTTGTGGGGAGTAATTGGAATCATCGTCAAGAGTGGAGGACGAAATTCCAAGTGATGAAGCAAACGTTGTTGTGGTGTCGCCACCATTAAGGTATCTCTTTAATCGATCCAAGTCATAAGCAGCATCCAGCATTGTGGGTCTTGTGGATGGAGATTCTTGAGTGCAGAGCAAACCCAATTCGATTAGCTCTCGGATTGCCACTTCCCACATTTTCTTCACTTCAGGTGATTCATCTCTTGAAACTCTCTGTAGAGAACAATCCACTACTTTTTCTACTCTGCCGTAGTAATGACTCTTCACCCACTTATGTAAGCTTAGCCCTTCATCAAACATGTCGTCTATTGGCCTTTTTCTTGTTACCATCTCTAGAACTAGCACACCGAAGCTGTAAACGTCTCCTTTCATGGAGGCTGTAGAACCAAATCCGTATTCTGCACCAAGAATAGATGTGACATAATTGATGCACTCAACATGTTTGATAAAAGTCATAGATGAAAAAACCCGAAAATACAGGATGTTTGTTGGGAACTTATTCAATGATTAAACTTGTAGCTTCGTAGCTTATCAACCTCAAAAGTTTAGGCCTAGTGATACTGATAACTTATCATGGTCTAAAGGAGAGAATCTTAACTTCTAACTCACTTGACAGTCCTAATTTTTTACATTTGCTTGGTATGTTGATGAATTGAACATGAAGTTCTTGGATTTTTAAAAGCAGAGAGTTATACCTGGTGCAATATATCCAATTGATCCAGTTAACATGTTTGCAGTTGATTTTCCCATGTTTTCAGCAGCTGCACCACTTCCAATTCCAGGAGTCATTAACCTTGAGATCCCGAAGTCAGAAACAAGAGCTGTCATGTCATCTTTTAGAAGAACATTGCTTGGCTTTAAATCACAGTGTATGACTCTGACTGGAGAATGATGATGCAAGTATGCCATTCCTTCAGCTATATCACTGCATATATTCACCCTTTGGATAAGGTTTAAATCTGAAGAACAAGAAGCCAAGCTGGCAGGTGAATGTGGATATAAATGGCTATCCAAGCTTCCATTTGCCATATATGGTAGAACTAGAGCTTTAAAGTCTGGAAGACTACAAGCTGTTATAATTCTTATAAGGTTTCTGTGGCGAATTCGCTTCAGAACTTCACATTCTCTGTGAAAACTTTTCGTCGAATTTCCAGATTGTGTGTGCAAAACCTTAACAGCTACTGTTGTTCCATCTGAAAGAATGCCTCTATAGACTCGTCCATAGCTGCCTGAGCCAATTAGTCTCTGTTCATCAAAACCTCCAGTGGCTTCTGATAGTTGCCTGCTTGTTATTCTTGGAAAATTGTGCATAAAATCTGGCATCTTTGATCTCCTTGATGATTCACTATTTCGTGCTGAAATAATTGCGTTTAGATGTTGACAAGAAAACCAACAGCATATTGTTGAGAAGAACGATGATATGCATATGATTAAAATGAACACAGACAAGAATACAGGTGATTGAAACCGATTTCTCTTGCTAGAACAGGCTGGTATTCCAGGAATTGTCCCACAAAGGAGTGTATTGTTCAAAAATGAAAGAGGTGTGGACGATATGAAAAATCCCTCTCTCGGAATCATTCCTTGGAAGTTGTTGAATGAAAGATTCAGGTAAGTGAGATATTGAAGCTTACCTAGACTGGCTGGAATCATGCCTGACAATTGGTTTTTAGAAATATCAAATGATTCAAGGTTTGCGAGTTCGCCTAGGGAATCTGGAAGATGACCTTGGAGGAAATTGTTTGAAAAATTTATGAAACTCAGTGCAATGCAACTTGATATCTGAGGGAAGATGTTTCCAGTGAGGTTATTGGATGAAAGGTCCATCTCTTGAACATTTTTCAGCTTGCTAAGCTCAATTGGCAAGTTTCCTTGAAAATTGTTATGAGAAAGGTTAATAAAAATTCTTATCTCTTGCAACCCGGATATCTCTCGAGGAATGCTTCCTGATAACATGTTGAAAGATAAATCCAGCTTTTGTAGACCTGTGCACTTTACCAATGCTGAAGGTATCGTTCCTGACAACAGGTTATTGTTGAGAAACAAATAGATCATCTGAGTCAAATTTCCGAAACTCTCTGGGATTTCACCTGAAAGTTGGTTGTGAGATAGATCTAACAATCCAAGATGTGGCAACTCGCCTAATGCTTCTGGAATGTCTGAAGTGAAGAGGTTATGTGATAAGAAAAGCTGCTCCAACTTCGACAACTTGCTTATCTCTGCAGGAATTGTTCCATTAAGTAGATTTGAAGTCAAATTCAGCCCTGCAAGTTTGGAAAGCTTGGCCAAACTTGGAGGAATTGATCCAAATATCTGA

mRNA sequence

TTTCTTCCCTAATCCCAATTACGTCACACAACTACGGATTCAGTGGCCTCGCATGTCACACAAATCTCCATTAACTTCAGCGCCGGAGAAGCTTCGAGCCCCACAATCGCGATTTTGATCATTGTCAAACCCCAATTACCGAGTGGAGCAAATGGGGATTTTGACACCTTACATAAGTCAAAAGGATATACAGAGGAAATGGGCATTTTTACATGTTTCTTTCTGCGGCAATTTGTGGGGAGTAATTGGAATCATCGTCAAGAGTGGAGGACGAAATTCCAAGTGATGAAGCAAACGTTGTTGTGGTGTCGCCACCATTAAGGTATCTCTTTAATCGATCCAAGTCATAAGCAGCATCCAGCATTGTGGGTCTTGTGGATGGAGATTCTTGAGTGCAGAGCAAACCCAATTCGATTAGCTCTCGGATTGCCACTTCCCACATTTTCTTCACTTCAGAGAGTTATACCTGGTGCAATATATCCAATTGATCCAGTTAACATGTTTGCAGTTGATTTTCCCATGTTTTCAGCAGCTGCACCACTTCCAATTCCAGGAGTCATTAACCTTGAGATCCCGAAGTCAGAAACAAGAGCTGTCATGTTTAAATCTGAAGAACAAGAAGCCAAGCTGGCAGGTTTCTGTGGCGAATTCGCTTCAGAACTTCACATTCTCTGTGAAAACTTTTCGTCGAATTTCCAGATTGCTGGTATTCCAGGAATTGTCCCACAAAGGAGTGTATTGTTCAAAAATGAAAGAGGTGTGGACGATATGAAAAATCCCTCTCTCGGAATCATTCCTTGGAAGTTGTTGAATGAAAGATTCAGGTTAATAAAAATTCTTATCTCTTGCAACCCGGATATCTCTCGAGGAATGCTTCCTGATAACATGTTGAAAGATAAATCCAGCTTTTGTAGACCTGTGCACTTTACCAATGCTGAAGGTATCGTTCCTGACAACAGATCTAACAATCCAAGATGTGGCAACTCGCCTAATGCTTCTGGAATGTCTGAAGTGAAGAGGTTATGTGATAAGAAAAGCTGCTCCAACTTCGACAACTTGCTTATCTCTGCAGGAATTGTTCCATTAAGTAGATTTGAAGTCAAATTCAGCCCTGCAAGTTTGGAAAGCTTGGCCAAACTTGGAGGAATTGATCCAAATATCTGA

Coding sequence (CDS)

ATGGAGATTCTTGAGTGCAGAGCAAACCCAATTCGATTAGCTCTCGGATTGCCACTTCCCACATTTTCTTCACTTCAGAGAGTTATACCTGGTGCAATATATCCAATTGATCCAGTTAACATGTTTGCAGTTGATTTTCCCATGTTTTCAGCAGCTGCACCACTTCCAATTCCAGGAGTCATTAACCTTGAGATCCCGAAGTCAGAAACAAGAGCTGTCATGTTTAAATCTGAAGAACAAGAAGCCAAGCTGGCAGGTTTCTGTGGCGAATTCGCTTCAGAACTTCACATTCTCTGTGAAAACTTTTCGTCGAATTTCCAGATTGCTGGTATTCCAGGAATTGTCCCACAAAGGAGTGTATTGTTCAAAAATGAAAGAGGTGTGGACGATATGAAAAATCCCTCTCTCGGAATCATTCCTTGGAAGTTGTTGAATGAAAGATTCAGGTTAATAAAAATTCTTATCTCTTGCAACCCGGATATCTCTCGAGGAATGCTTCCTGATAACATGTTGAAAGATAAATCCAGCTTTTGTAGACCTGTGCACTTTACCAATGCTGAAGGTATCGTTCCTGACAACAGATCTAACAATCCAAGATGTGGCAACTCGCCTAATGCTTCTGGAATGTCTGAAGTGAAGAGGTTATGTGATAAGAAAAGCTGCTCCAACTTCGACAACTTGCTTATCTCTGCAGGAATTGTTCCATTAAGTAGATTTGAAGTCAAATTCAGCCCTGCAAGTTTGGAAAGCTTGGCCAAACTTGGAGGAATTGATCCAAATATCTGA

Protein sequence

MEILECRANPIRLALGLPLPTFSSLQRVIPGAIYPIDPVNMFAVDFPMFSAAAPLPIPGVINLEIPKSETRAVMFKSEEQEAKLAGFCGEFASELHILCENFSSNFQIAGIPGIVPQRSVLFKNERGVDDMKNPSLGIIPWKLLNERFRLIKILISCNPDISRGMLPDNMLKDKSSFCRPVHFTNAEGIVPDNRSNNPRCGNSPNASGMSEVKRLCDKKSCSNFDNLLISAGIVPLSRFEVKFSPASLESLAKLGGIDPNI

Homology

[Close]

BLAST of CmaCh14G010480 vs. ExPASy TrEMBL
Match: A0A4Y1R548 (Mediator of RNA polymerase II transcription subunit 37f OS=Prunus dulcis OX=3755 GN=Prudu_008848 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.5e-06
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 22  FSSLQRVIPGAIYPIDPVNMFAVDFPMFSAAAPLPIPGVINLEIPKSETRAVM 75
           F+S  R +PGA+YPIDP N+FAV+FPM S A   P P + NL IPKSET+AV+
Sbjct: 589 FTSEDRTLPGAMYPIDPHNIFAVEFPMSSRAEFAP-PAINNLAIPKSETKAVI 640

[Close]

BLAST of CmaCh14G010480 vs. ExPASy TrEMBL
Match: C4J657 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05
Identity = 45/131 (34.35%), Postives = 64/131 (48.85%), Query Frame = 0


Query: 113 GIVPQRSVLFKNERGVDDMKNPSLGIIPWKLLNERFRLIKILISCNPDISRGMLPDNMLK 172
           GI P+R +  ++   V   +  S G  P + L ER  +     S     S GM P  +L 
Sbjct: 120 GISPERLLKRRSSVTVAGSRPSSRGTPPERWLWERLSVPASAASL--PSSAGMAPVRLLD 179

Query: 173 DKSSFCRP-VHFTNAEGIVPDN----RSNNPRCGNSPNASGMSEVKRLCDKKSCSNFDNL 232
           D+SS CRP +    A G++PDN    RSN   C   P++SG + VK  CD+    +F   
Sbjct: 180 DRSSICRPTMSCQTAAGMLPDNAFSARSNLSSCLQRPSSSGSAPVKAFCDRSRFCSFGIP 239

Query: 233 LISAGIVPLSR 239
             +AG  P+SR
Sbjct: 240 HSAAGNGPVSR 248

[Close]

BLAST of CmaCh14G010480 vs. ExPASy TrEMBL
Match: A0A0E0M8K0 (Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-04
Identity = 42/127 (33.07%), Postives = 57/127 (44.88%), Query Frame = 0


Query: 137 GIIPWKLLNERFRLIKILISCNPDISRGMLPDNMLKDKSSFCRPVHFTNAEGIVP----D 196
           G++P   L+   R  + L +    +  G  P  +L   S  C  V    + GIVP     
Sbjct: 108 GMVPLMWLSNTARYWRFLRAV---MVAGSSPCRLLVLTSKLCNAVMLPISGGIVPVRLLK 167

Query: 197 NRSNNPRCGNSPNASGMSEVKRLCDKKSCSNFDNLLISAGIVPLSRFEVKFSPASLESLA 256
           N +N   C + P+  G+  V  L DK SCS F N  IS GI PLS    ++   S  +L 
Sbjct: 168 NNANFMSCLSLPSELGIGPVSELSDKSSCSRFSNSPISVGIEPLSLLVNRYRNCSFLALP 227

Query: 257 KLGGIDP 260
             GGI P
Sbjct: 228 SSGGILP 231

[Close]

BLAST of CmaCh14G010480 vs. NCBI nr
Match: BBG99231.1 (Mediator of RNA polymerase II transcription subunit 37f [Prunus dulcis])

HSP 1 Score: 62.8 bits (151), Expect = 5.1e-06
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 22  FSSLQRVIPGAIYPIDPVNMFAVDFPMFSAAAPLPIPGVINLEIPKSETRAVM 75
           F+S  R +PGA+YPIDP N+FAV+FPM S A   P P + NL IPKSET+AV+
Sbjct: 589 FTSEDRTLPGAMYPIDPHNIFAVEFPMSSRAEFAP-PAINNLAIPKSETKAVI 640

[Close]

BLAST of CmaCh14G010480 vs. NCBI nr
Match: ACR36657.1 (unknown [Zea mays])

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-05
Identity = 45/131 (34.35%), Postives = 64/131 (48.85%), Query Frame = 0


Query: 113 GIVPQRSVLFKNERGVDDMKNPSLGIIPWKLLNERFRLIKILISCNPDISRGMLPDNMLK 172
           GI P+R +  ++   V   +  S G  P + L ER  +     S     S GM P  +L 
Sbjct: 120 GISPERLLKRRSSVTVAGSRPSSRGTPPERWLWERLSVPASAASL--PSSAGMAPVRLLD 179

Query: 173 DKSSFCRP-VHFTNAEGIVPDN----RSNNPRCGNSPNASGMSEVKRLCDKKSCSNFDNL 232
           D+SS CRP +    A G++PDN    RSN   C   P++SG + VK  CD+    +F   
Sbjct: 180 DRSSICRPTMSCQTAAGMLPDNAFSARSNLSSCLQRPSSSGSAPVKAFCDRSRFCSFGIP 239

Query: 233 LISAGIVPLSR 239
             +AG  P+SR
Sbjct: 240 HSAAGNGPVSR 248

The following BLAST results are available for this feature:

BLAST of CmaCh14G010480 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G010480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Y1R548	2.5e-06	60.38	Mediator of RNA polymerase II transcription subunit 37f OS=Prunus dulcis OX=3755...	[more]
C4J657	1.6e-05	34.35	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]
A0A0E0M8K0	1.4e-04	33.07	Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1	[more]

BLAST of CmaCh14G010480 vs. NCBI nr


Match Name	E-value	Identity	Description
BBG99231.1	5.1e-06	60.38	Mediator of RNA polymerase II transcription subunit 37f [Prunus dulcis]	[more]
ACR36657.1	3.3e-05	34.35	unknown [Zea mays]	[more]

BLAST of CmaCh14G010480 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G010480.1	CmaCh14G010480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0000166	nucleotide binding