CmaCh14G010350 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G010350
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Transmembrane 9 superfamily member
Location	Cma_Chr14: 5454920 .. 5455207 (-)
RNA-Seq Expression	CmaCh14G010350
Synteny	CmaCh14G010350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCCGATTTTGGAATTCGACGCCGCCGGGATCTTCCTCAAAATCGCCATGTTCGTCGTCGTTCAGGTTCTCGTGTATTTGATCCTCTCCAAATCATCCAATCTCTTCTCCAACGACAAGAAATTGAGATCTCTCAGCTTTAAACCAGCTCGTTCCGTCAGTATTCGTCGGTTGCTGGCAGCTCTTTCCGATCTTCCACCCGGCGGCGAGCTTTCTCCGTCGTCGAGTGTTCCAACTCCCTCGTCTGTTCGTCGGGAGCGTTCCGACGACAGTGGCAGGTTTTAG

mRNA sequence

ATGACGCCGATTTTGGAATTCGACGCCGCCGGGATCTTCCTCAAAATCGCCATGTTCGTCGTCGTTCAGGTTCTCGTGTATTTGATCCTCTCCAAATCATCCAATCTCTTCTCCAACGACAAGAAATTGAGATCTCTCAGCTTTAAACCAGCTCGTTCCGTCAGTATTCGTCGGTTGCTGGCAGCTCTTTCCGATCTTCCACCCGGCGGCGAGCTTTCTCCGTCGTCGAGTGTTCCAACTCCCTCGTCTGTTCGTCGGGAGCGTTCCGACGACAGTGGCAGGTTTTAG

Coding sequence (CDS)

ATGACGCCGATTTTGGAATTCGACGCCGCCGGGATCTTCCTCAAAATCGCCATGTTCGTCGTCGTTCAGGTTCTCGTGTATTTGATCCTCTCCAAATCATCCAATCTCTTCTCCAACGACAAGAAATTGAGATCTCTCAGCTTTAAACCAGCTCGTTCCGTCAGTATTCGTCGGTTGCTGGCAGCTCTTTCCGATCTTCCACCCGGCGGCGAGCTTTCTCCGTCGTCGAGTGTTCCAACTCCCTCGTCTGTTCGTCGGGAGCGTTCCGACGACAGTGGCAGGTTTTAG

Protein sequence

MTPILEFDAAGIFLKIAMFVVVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSDLPPGGELSPSSSVPTPSSVRRERSDDSGRF

Homology

[Close]

BLAST of CmaCh14G010350 vs. ExPASy TrEMBL
Match: A0A5A7UC63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00310 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.7e-25
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1  MTPILEFDAAGIFLKIAMFVVVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          MTPI E DA  +F++IAMFV VQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSSVPTPSSVRRERSDD 92
          AALSDLPPGGELS       PSSVRR RSDD
Sbjct: 61 AALSDLPPGGELS-------PSSVRRGRSDD 84

[Close]

BLAST of CmaCh14G010350 vs. ExPASy TrEMBL
Match: A0A1S3CFW1 (uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.7e-25
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1  MTPILEFDAAGIFLKIAMFVVVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          MTPI E DA  +F++IAMFV VQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1  MTPISETDAGEMFVRIAMFVFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSSVPTPSSVRRERSDD 92
          AALSDLPPGGELS       PSSVRR RSDD
Sbjct: 61 AALSDLPPGGELS-------PSSVRRGRSDD 84

[Close]

BLAST of CmaCh14G010350 vs. ExPASy TrEMBL
Match: A0A6J0PQA3 (uncharacterized protein LOC109506509 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC109506509 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 55/79 (69.62%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 12 IFLKIAMFVVVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSDLPPGGE 71
          + LK+AMFV+VQ LVYLILSKSSN+FS   K RSLSF+  RSVSIRR+LAALSDLPPGGE
Sbjct: 14 VLLKVAMFVLVQALVYLILSKSSNIFST-TKTRSLSFRTVRSVSIRRMLAALSDLPPGGE 73

Query: 72 LSPSSSVPTPSSVRRERSD 91
           SPSSSV   SS   +  D
Sbjct: 74 PSPSSSVSPASSPSSDHKD 91

[Close]

BLAST of CmaCh14G010350 vs. ExPASy TrEMBL
Match: M0RJ50 (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.4e-15
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 12 IFLKIAMFVVVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSDLPPGGE 71
          + +K+ +F VVQ LVYLIL+KSSN+FS ++KLRSLSF+PARSVS+RRLLA LSD+PPGGE
Sbjct: 7  VLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALLSDMPPGGE 66

Query: 72 LSPSSSVPTPSSVRRERSDDS 93
           SPSSS        R  +DDS
Sbjct: 67 TSPSSS-------SRSLADDS 80

[Close]

BLAST of CmaCh14G010350 vs. ExPASy TrEMBL
Match: A0A444DLD0 (Transmembrane 9 superfamily member OS=Ensete ventricosum OX=4639 GN=GW17_00038188 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.4e-15
Identity = 52/81 (64.20%), Postives = 64/81 (79.01%), Query Frame = 0


Query: 12 IFLKIAMFVVVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLLAALSDLPPGGE 71
          + +K+ +F VVQ LVYLIL+KSSN+FS ++KLRSLSF+PARSVS+RRLLA LSD+PPGGE
Sbjct: 11 VLMKVVVFAVVQALVYLILTKSSNVFSANQKLRSLSFRPARSVSVRRLLALLSDMPPGGE 70

Query: 72 LSPSSSVPTPSSVRRERSDDS 93
           SPSSS        R  +DDS
Sbjct: 71 TSPSSS-------SRSLADDS 84

[Close]

BLAST of CmaCh14G010350 vs. NCBI nr
Match: KAG7018107.1 (hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 160.6 bits (405), Expect = 6.6e-36
Identity = 90/95 (94.74%), Postives = 90/95 (94.74%), Query Frame = 0


Query: 1  MTPILEFDAAGIFLKIAMFVVVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          M  ILEFD AGIFLKIAMFV VQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL
Sbjct: 1  MISILEFDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 61 AALSDLPPGGELSPSSSVPTPSSVRRERSDDSGRF 96
          AALSDLPPGGELSPSSSV TPSSVRRERSDDSGRF
Sbjct: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDDSGRF 95

[Close]

BLAST of CmaCh14G010350 vs. NCBI nr
Match: KAG6581607.1 (hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.5 bits (384), Expect = 1.8e-33
Identity = 86/92 (93.48%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MTPILEFDAAGIFLKIAMFVVVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          M  ILE+D AGIFLKIAMFV VQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL
Sbjct: 1  MISILEYDVAGIFLKIAMFVFVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60

Query: 61 AALSDLPPGGELSPSSSVPTPSSVRRERSDDS 93
          AALSDLPPGGELSPSSSV TPSSVRRERSDDS
Sbjct: 61 AALSDLPPGGELSPSSSVLTPSSVRRERSDDS 92

[Close]

BLAST of CmaCh14G010350 vs. NCBI nr
Match: XP_011651805.2 (uncharacterized protein LOC105434941 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-29
Identity = 74/94 (78.72%), Postives = 84/94 (89.36%), Query Frame = 0


Query: 1  MTPILEFDAAGIFLKIAMFVVVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          MTPI + DA  +F++IAMFV +Q+LVYLILSKSSNLFSND+K+RSLSFKPARSVSIRR L
Sbjct: 1  MTPIFDTDAGEMFVRIAMFVFIQLLVYLILSKSSNLFSNDQKVRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSSVPTPSSVRRERSDDSGR 95
          AALSDLPPGGELSPS+ V TPSS RR+RSDD GR
Sbjct: 61 AALSDLPPGGELSPSTKVSTPSSARRDRSDDGGR 94

[Close]

BLAST of CmaCh14G010350 vs. NCBI nr
Match: XP_038905322.1 (uncharacterized protein LOC120091388 [Benincasa hispida])

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-29
Identity = 75/95 (78.95%), Postives = 82/95 (86.32%), Query Frame = 0


Query: 1  MTPILEFDAAGIFLKIAMFVVVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          MTPILE D   +F+KIAMF  VQ+LVYLILSKSSNLFSND+KLRSLSFKPARSVSIRR L
Sbjct: 1  MTPILESDTCEMFVKIAMFAFVQLLVYLILSKSSNLFSNDQKLRSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSSVPTPSSVRRERSDDSGRF 96
          AALSDLPPGGE+SP+  V TPSS RR+ SDD GRF
Sbjct: 61 AALSDLPPGGEISPTPRVQTPSSFRRDHSDDGGRF 95

[Close]

BLAST of CmaCh14G010350 vs. NCBI nr
Match: KAG6606858.1 (hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036564.1 hypothetical protein SDJN02_00183, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26
Identity = 70/95 (73.68%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1  MTPILEFDAAGIFLKIAMFVVVQVLVYLILSKSSNLFSNDKKLRSLSFKPARSVSIRRLL 60
          M PILE DA   F+KIAMF++VQ+LVY ILS+SS+LFS D+KL+SLSFKPARSVSIRR L
Sbjct: 1  MMPILEIDAGEFFVKIAMFLLVQLLVYFILSESSDLFSKDQKLKSLSFKPARSVSIRRFL 60

Query: 61 AALSDLPPGGELSPSSSVPTPSSVRRERSDDSGRF 96
          AALSD+P GGELSPSS V TPS + RE SDD GRF
Sbjct: 61 AALSDMPSGGELSPSSRVRTPSPIHREHSDDGGRF 95

[Close]

BLAST of CmaCh14G010350 vs. TAIR 10
Match: AT1G05575.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31945.1); Has 63 Blast hits to 63 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 4.4e-14
Identity = 41/80 (51.25%), Postives = 61/80 (76.25%), Query Frame = 0


Query: 5  LEFDAAGIFLKIAMFVVVQVLVYLILSKSSNLFSNDKKL-RSLSFKPARSVSIRRLLAAL 64
          +E    G+ +K+++F ++Q LVYLILSKSS++FS  K + R+ SF+ ARS+SIRR+LA L
Sbjct: 1  MEGSFEGMLMKVSIFALIQGLVYLILSKSSSVFSTSKTMKRAYSFRSARSISIRRILAVL 60

Query: 65 SDLPPGGELSPSSSVPTPSS 84
           D+P GGE+SPS+  P+ +S
Sbjct: 61 QDMPAGGEMSPSAMGPSLAS 80

[Close]

BLAST of CmaCh14G010350 vs. TAIR 10
Match: AT2G31945.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-12
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 12 IFLKIAMFVVVQVLVYLILSKSSNLFSNDKKL-RSLSFKPARSVSIRRLLAALSDLPPGG 71
          + +K+A+F +VQ LVYLIL KSS +F+    L R+ SF+P RSVSIRR+LAAL D+P G 
Sbjct: 8  MLMKVALFALVQGLVYLILLKSSRVFARSNSLKRAYSFRPMRSVSIRRILAALQDIPAGD 67

Query: 72 ELSPSSSVPTPSS 84
          ++SPSS+  + SS
Sbjct: 68 DMSPSSNGSSSSS 80

The following BLAST results are available for this feature:

BLAST of CmaCh14G010350 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G010350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UC63	5.7e-25	79.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CFW1	5.7e-25	79.12	uncharacterized protein LOC103500281 OS=Cucumis melo OX=3656 GN=LOC103500281 PE=...	[more]
A0A6J0PQA3	1.8e-15	69.62	uncharacterized protein LOC109506509 OS=Elaeis guineensis var. tenera OX=51953 G...	[more]
M0RJ50	2.4e-15	64.20	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 PE=4 SV=1	[more]
A0A444DLD0	2.4e-15	64.20	Transmembrane 9 superfamily member OS=Ensete ventricosum OX=4639 GN=GW17_0003818...	[more]

BLAST of CmaCh14G010350 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018107.1	6.6e-36	94.74	hypothetical protein SDJN02_19975, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6581607.1	1.8e-33	93.48	hypothetical protein SDJN03_21609, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011651805.2	2.1e-29	78.72	uncharacterized protein LOC105434941 [Cucumis sativus]	[more]
XP_038905322.1	2.7e-29	78.95	uncharacterized protein LOC120091388 [Benincasa hispida]	[more]
KAG6606858.1	1.6e-26	73.68	hypothetical protein SDJN03_00200, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh14G010350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05575.1	4.4e-14	51.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi...	[more]
AT2G31945.1	3.2e-12	54.79	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..95
None	No IPR available	PANTHER	PTHR34268:SF16	OS02G0774200 PROTEIN	coord: 11..87
None	No IPR available	PANTHER	PTHR34268	OS01G0321850 PROTEIN	coord: 11..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G010350.1	CmaCh14G010350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0010008	endosome membrane
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane