CmaCh14G010150 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G010150
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	sm-like protein LSM7
Location	Cma_Chr14: 5337953 .. 5342688 (-)
RNA-Seq Expression	CmaCh14G010150
Synteny	CmaCh14G010150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCAAATTTAGGGCACATTCTTTCCACTCCTCACCACTTCCATTGAAAGTAAGCTCCAATTCATTCCCCTTCTTCACACAAATTTCGGTTTTATTCGTTGTTCTTTTGCACAGTGTAGCTTCCAGTTCTTCATTATTGATTTCCAGATGCATGATGCCCTAACTACGTCGAGATTATTTGAATCGACCAGCAGATGGAATTTTTTTTTTTTCGCTCGTTGTAATTTGTTTAATTTCTCGGATATTTCAGGTTTCTGGTGCCTTTAATTTTTACTGAGGAGTTGCGAAAACACTATCGTGATGGTAAATTTCTGAATGATTTGTTCAATTAGGATATTGATGCTGGTTGATTACGAAGTATAATGTGGTATTCGTATCGTTTGTTTTATCAGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAGGGCGTCCAAGTGAAGCTTACCGGTGGTCGACAAGGTTGTTTCTATTAATTATGGTTAATAGTATTACTGCCATTTGGATACAATTCATTGCTTTCTGATTAGCAAGATTTTTATTCAACTGTTCGTGTGTTGCGTTGAAGAGGACCGAGGCACATAATTGAATGTTCGATGTCTTTTTTTCTTTTTAATTTGTTGTTTTTAAATTTAAGAAAAGTGCCTTATGAGCCTTATTTTCCATTGACAGTTACTGGAACGCTAAAAGGATATGATCAATTGCTGAACCTTGTGCTGGATGAAACTATAGAGTTTTTAAGAGGTAACCAATTAACTGGATACTGGCAGAATAGATGAGAGTTGTGGAATTTTATAAACGTATAGACTGAAAGCTCGATGGAAATTGATTAGCAGCATTCATATAACTTTTCTTATTTATTTTCACTTTCCTGCTATTTTAAATGTACGGGAAATTTAGAAAAAAAAAATCATTTGATATTGGATGAAGAGGCACAAATTAAGTATTTAATTTAGAAGTAACATAAGCAAACAAACAATATTTCTATAAGAATAGACAAAGATTTTTGTTCTGCCGATTTAACGGATTAAGATATGGCAGTGTAGTAAAGGCCTTTCATATTGAAACGTTATTTTGTTTTACATGTTTTCTCTAAGCATATTTGCAATTGATACGTTTTTTTTTCCTATCTTTCAATAGAAAAATGGATGTCATTGGCATTATGGACTATATGAATAGTTATTTTATTTTATTTTTATTTTTATTTTGAATATTGGATATATTTAAATTTATAGTAGGCTGTTGCATAAATTTGTAGCCTCAATTTGCATTATTATCTTGTAAATCTTTGCATACATTTTGGATTTTATTCGTGTACCCATACACTATTATAAGATTTGTTTGACTAAAAGTTGCAAATACGTGCAAATCTATAACAATCTCTACCATAATATATAAAACCACCATTTTTTCTTTCTATTGTTACTTGTAACTAGATGATTAATCTATTCATAGGCATAAATAAAATTCTGAATTAGTATGTATGTGTGTGCAATGCATATAATATTAAGTAATCACATTCATTCAAAAGGCATGGAAAAAAGAGGAAAGATGAGCAATATCATCTCCCCGGTCCAGGCCTTGGGGTGGGTGCTGGTGCCCTCGGGAATAGGAGAGCAAAGCTTCAACTCCCGGTTATATTAAAAACAAAAACCTCTATATTATTTATCATCAGCCGGGGTACAAAAGCCTCCCACCCAGCATTTCCTACCAAAATCACCGCAACTATTTAGCTTATGTACACCCACAGCTATGACTAACAACCTCACTCCCAGCCCCAAGTATGACTCCCACCAACTGACATTGTTCCTTCTCCCCTTACACACTGCACCTTGACTAATGAAAGCCTAGAAAAATATACAAATTAGAGGCAAAACCTAGAAGCTCTCAGAACTTATCTAAGCTCCACATCTTGTGTTCGTAATTTTTTTTAGAGAAAAAAAAAAGGTAATATTTTTGTCTCTACTTCCAAAGCTCCCACAAAAAAGCTTTGAGGAGTTTGAACCACAACATCCTATTTGGACGTATGCTCACAAAGACTATGTTCGGCAACCAAACAAAAGAACACATCAAAACAGAAAAATAACTATATTGCAATATCAATGAAGAAATTACAATATCAAATCGCTTTTTTTAAGAGGGTTATCTCTCTCCGAAGTCCCACAATGAACAATCCTCACCAAAAATGATCTTATAGTGTCCCTAACTCCCCATATTTATAACCAAGTTACCCCCTAACTAATTACCACTATGTCCTTACTTCTAATATTCCCAATATGTTCCTTACTAGTACTATCACAGACCCTTGCAACAAGGCCTGATTATATGTGTGGAAGCGCCATTGAAAGCCGGAAACTTCCAGTAGCTTATGCCAACAAGGACAGACTAGGCAGGTCGTGCTATTAATCCTCAAAATTTTCTTTGTTAAGAAGTTTCCACTTAGGAGCCTATACTTTATAAGGGCACTTCTGATGAATTCTGTCCCGTGGTGTTGATATTTCATATTCCGTAGCACCAAGGTTCAAGAACAAACTAGACCTTCTTTGCAGCCAAAGCTTTCCAAATAGCCTCGGAGAGCCATTTCTCCAACATTCTAGGACGTGTAAAGAAGTATTATAATGGTACTATAAAGTTCATTTATGAATTAGTAAATGAGTTCATGGACTCATCTGGGTTTGCACCTCCTCTTTTTTTTTTTTTTTTTTTTTTTTTTCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATCATAGTTCATATCTTAAAATACTATTATGGTTCATGTACTTTGGATTTCTTCCCCTTATAGTCCTTGTACTTTCAAATCTTAAAATCTAGGCCTTATAATTTCAATAAAACTTTAAATTACTCTCTATTGTTGATTTGAAACTAATTTTTAACGAACTTAATAAAATAATAACAATATTTTTCATTCAAGAAAAATATACAATGTGGATATGTTTCCAAAAATTATAGAGGGGAGGCTAATAAAAATTACATTACTTTTTAATAAGTTAATAATAAACTATCTGTTAGGAACTAATATTAAGATTTATTAAAAATAGAAGAACCAAATTTGGACATTTGGACATGCATAAACTAAAATAAAATGAGACCCAAAGTACATGGACCAAAATGATATTTTAATCTAGGTCATATTACACATCATAACTTTTAAAAGGCTCTTTCCCAAGGGCAAGGTTTTTTATTTTCCCAAATTCAGATGATTTAGTTTGGTGGTGATATGTTTCTATTGTTTTGATTTTGGTCCTATGCCCCACTTTCTTAATATCTAAATTCTTTTCGGTTGACCTACTAGTCAGTCATGTTTTTTTCTTTTTTGTGTGGTAGTAATGGCCTTTTACTTCTGTTTATTTGGTACTTTTTTGAATGAGTAATAAGTTAAAATATTATCCTTACACCAGGAAATATCTAATGTATTGACCTTTTTCGGCAGATTCTGATGATCCGTTGAAGACAACAGATCAAACCAGACGTCTTGGTCTTATTGTATGATTCTTACTATCTACATATTTTAGTTATCGTTTAAAATAAGGCATCTATGGTTAGAGCCTTGGATGCCATAACAGATTTATTATTTTTCTGCAGAGTATTATTATTTAAGCATGCAGCTTTGGACTTTATTTTGACAATTGCAATTATCTGTGCGCTAAACAGATTAGATGGTCTTAATCACCGGACACAGGCCTATATGTTCTAGCCGAGCATGTTTCTATCATTTGAATATTTGTATATTCTTGTGCATTGTGCAACCATTCGTCTCAGCTATCACTTGCACCATGTTAAACTGCTCACGCTTTCTCTTGCTCTTTTTTTTTTATTTTTTTATTTTAGGGGTTAGTGCATGGTTAACTATTTATTATGAAAATTTTGTTGAAAATTTTAAAGTATTTTATCACGAGGAAAAAGTGAAAAATCGGCTCTTCTTAAGCGTGCATATGCAGAAGGAGAAAATAAGTGTTCTATAAGGCGTGCTTCATAGTTCCAAAATTGTGTTTATTTTTGGGTACGAGCCTGTATGATCAATTTGCATGCTGTTCACTGCAGGTCTGCAGGGGGACTGCCGTAATGCTTGTGTCTCCAGTTGATGGTACAGACGAGATTGCTAACCCCTTTATCCAACCGGATGGTGCGTAGGTGTAATTTTTTGTCTACTTTACTTTCCCTGTTCTCTATCTGAATATCAAGTTCCGCTATTTTCTTTGTGATCCCTCTCTCTCTCTATTAAACAATTGAGTTTGAACCCTTCTATCTAGATACGTGGAGCACTTATCCATGTGAAGTAAAATTGTGAAATTTTGTTAATTTCAGTAAACTTACCGCTTTCTTTGAGTTTTACTGTTTTTGGGTTCCTTCACTTTGGATGCCTTCCCAAGTCTAAAAGAGCACATGACGCTTTGATGGCATTGCCCAATCAGCTGGTGCCTGACACTGACAAAGAACTGAAGGTG

mRNA sequence

GAGCAAATTTAGGGCACATTCTTTCCACTCCTCACCACTTCCATTGAAAGTTTCTGGTGCCTTTAATTTTTACTGAGGAGTTGCGAAAACACTATCGTGATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAGGGCGTCCAAGTGAAGCTTACCGGTGGTCGACAAGTTACTGGAACGCTAAAAGGATATGATCAATTGCTGAACCTTGTGCTGGATGAAACTATAGAGTTTTTAAGAGATTCTGATGATCCGTTGAAGACAACAGATCAAACCAGACGTCTTGGTCTTATTGTCTGCAGGGGGACTGCCGTAATGCTTGTGTCTCCAGTTGATGGTACAGACGAGATTGCTAACCCCTTTATCCAACCGGATGTAAACTTACCGCTTTCTTTGAGTTTTACTGTTTTTGGGTTCCTTCACTTTGGATGCCTTCCCAAGTCTAAAAGAGCACATGACGCTTTGATGGCATTGCCCAATCAGCTGGTGCCTGACACTGACAAAGAACTGAAGGTG

Coding sequence (CDS)

ATGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAGGGCGTCCAAGTGAAGCTTACCGGTGGTCGACAAGTTACTGGAACGCTAAAAGGATATGATCAATTGCTGAACCTTGTGCTGGATGAAACTATAGAGTTTTTAAGAGATTCTGATGATCCGTTGAAGACAACAGATCAAACCAGACGTCTTGGTCTTATTGTCTGCAGGGGGACTGCCGTAATGCTTGTGTCTCCAGTTGATGGTACAGACGAGATTGCTAACCCCTTTATCCAACCGGATGTAAACTTACCGCTTTCTTTGAGTTTTACTGTTTTTGGGTTCCTTCACTTTGGATGCCTTCCCAAGTCTAAAAGAGCACATGACGCTTTGATGGCATTGCCCAATCAGCTGGTGCCTGACACTGACAAAGAACTGAAGGTG

Protein sequence

MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKTTDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDVNLPLSLSFTVFGFLHFGCLPKSKRAHDALMALPNQLVPDTDKELKV

Homology

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BLAST of CmaCh14G010150 vs. ExPASy Swiss-Prot
Match: Q9SI54 (Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.7e-44
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE +EF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]

BLAST of CmaCh14G010150 vs. ExPASy Swiss-Prot
Match: Q9UK45 (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.0e-28
Identity = 55/92 (59.78%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKTTDQ 63
          +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD TIE++RD DD  K T+ 
Sbjct: 8  KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTED 67

Query: 64 TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQ 96
          TR+LGL+VCRGT+V+L+ P DG + I NPFIQ
Sbjct: 68 TRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQ 99

[Close]

BLAST of CmaCh14G010150 vs. ExPASy Swiss-Prot
Match: Q9CQQ8 (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.3e-27
Identity = 53/92 (57.61%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKTTDQ 63
          +KE++LDL+K++DK ++VK  GGR+ +G LKG+D LLNLVLD T+E++RD DD  K T+ 
Sbjct: 8  KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTED 67

Query: 64 TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQ 96
          TR+LGL+VCRGT+V+L+ P DG + I NPF+Q
Sbjct: 68 TRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQ 99

[Close]

BLAST of CmaCh14G010150 vs. ExPASy Swiss-Prot
Match: Q54HF6 (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX=44689 GN=lsm7 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.4e-26
Identity = 53/90 (58.89%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 4  RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKTTDQ 63
          +KE++LDL KF+ K + VK TGGR+V G LKGYDQL+N+ LD+T EF+RD++DPL TTD+
Sbjct: 8  KKESILDLQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDE 67

Query: 64 TRRLGLIVCRGTAVMLVSPVDGTDEIANPF 94
           R LGL+VCRG++VM+V P +G + I NP+
Sbjct: 68 KRFLGLVVCRGSSVMMVCPTEGCEPIDNPY 97

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BLAST of CmaCh14G010150 vs. ExPASy Swiss-Prot
Match: O74499 (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm7 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 50/94 (53.19%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 4   RKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKTTDQ 63
           RKE++LDL+++ D+ +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+ +D  K T  
Sbjct: 21  RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGA 80

Query: 64  TRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
            R+LGL+V RGT ++L++P+DG++EI NPF+Q +
Sbjct: 81  IRKLGLVVVRGTTLVLIAPMDGSEEIPNPFVQAE 113

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BLAST of CmaCh14G010150 vs. ExPASy TrEMBL
Match: A0A6J1J3M9 (sm-like protein LSM7 OS=Cucurbita maxima OX=3661 GN=LOC111482381 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.0e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of CmaCh14G010150 vs. ExPASy TrEMBL
Match: A0A6J1F6X2 (sm-like protein LSM7 OS=Cucurbita moschata OX=3662 GN=LOC111441416 PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 4.0e-46
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE IEFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of CmaCh14G010150 vs. ExPASy TrEMBL
Match: A0A6J1KGY2 (sm-like protein LSM7 OS=Cucurbita maxima OX=3661 GN=LOC111493122 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.2e-46
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE +EFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of CmaCh14G010150 vs. ExPASy TrEMBL
Match: A0A6J1G9G2 (sm-like protein LSM7 OS=Cucurbita moschata OX=3662 GN=LOC111452019 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.2e-46
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE +EFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of CmaCh14G010150 vs. ExPASy TrEMBL
Match: A0A6J1DI46 (sm-like protein LSM7 OS=Momordica charantia OX=3673 GN=LOC111020268 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.5e-45
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE IEFLRD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of CmaCh14G010150 vs. NCBI nr
Match: XP_022983896.1 (sm-like protein LSM7 [Cucurbita maxima])

HSP 1 Score: 196.1 bits (497), Expect = 2.1e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of CmaCh14G010150 vs. NCBI nr
Match: XP_022934168.1 (sm-like protein LSM7 [Cucurbita moschata] >XP_023526539.1 sm-like protein LSM7 [Cucurbita pepo subsp. pepo] >KAG6581586.1 Sm-like protein LSM7, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018089.1 Sm-like protein LSM7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.1 bits (492), Expect = 8.2e-46
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE IEFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of CmaCh14G010150 vs. NCBI nr
Match: XP_022948303.1 (sm-like protein LSM7 [Cucurbita moschata] >XP_022948305.1 sm-like protein LSM7 [Cucurbita moschata] >XP_022998506.1 sm-like protein LSM7 [Cucurbita maxima] >XP_022998508.1 sm-like protein LSM7 [Cucurbita maxima] >XP_023525746.1 sm-like protein LSM7 [Cucurbita pepo subsp. pepo] >XP_023525747.1 sm-like protein LSM7 [Cucurbita pepo subsp. pepo] >KAG6606872.1 Sm-like protein LSM7, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036578.1 Sm-like protein LSM7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-45
Identity = 95/97 (97.94%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE +EFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of CmaCh14G010150 vs. NCBI nr
Match: XP_022152570.1 (sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 [Momordica charantia])

HSP 1 Score: 192.2 bits (487), Expect = 3.1e-45
Identity = 95/97 (97.94%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE IEFLRD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
          TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of CmaCh14G010150 vs. NCBI nr
Match: XP_020260133.1 (sm-like protein LSM7 isoform X2 [Asparagus officinalis] >ONK81825.1 uncharacterized protein A4U43_C01F33250 [Asparagus officinalis])

HSP 1 Score: 191.4 bits (485), Expect = 5.3e-45
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE +EFLRDSDDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFIQPD 98
          TDQTRRLGLIVCRGTAVMLVSP DGTDEIANPF+QPD
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFLQPD 97

[Close]

BLAST of CmaCh14G010150 vs. TAIR 10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-45
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE +EF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]

BLAST of CmaCh14G010150 vs. TAIR 10
Match: AT2G03870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-45
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKT 60
          MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDE +EF+RD DDPLKT
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60

Query: 61 TDQTRRLGLIVCRGTAVMLVSPVDGTDEIANPFI 95
          TDQTRRLGLIVCRGTAVMLVSP DGT+EIANPF+
Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFV 94

[Close]

BLAST of CmaCh14G010150 vs. TAIR 10
Match: AT2G23930.1 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 62.0 bits (149), Expect = 4.5e-10
Identity = 30/75 (40.00%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKTTDQTRRLGL 69
          DL K++DK +Q+KL   R VTGTL+G+DQ +NLV+D T+E        +   D+T  +G+
Sbjct: 9  DLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGM 68

Query: 70 IVCRGTAVMLVSPVD 85
          +V RG +++ V  ++
Sbjct: 69 VVIRGNSIVTVEALE 74

[Close]

BLAST of CmaCh14G010150 vs. TAIR 10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-09
Identity = 31/75 (41.33%), Postives = 49/75 (65.33%), Query Frame = 0


Query: 10 DLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKTTDQTRRLGL 69
          DL K++DK +Q+KL   R V GTL+G+DQ +NLV+D T+E   + DD    TD    +G+
Sbjct: 9  DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV--NGDD---KTD----IGM 68

Query: 70 IVCRGTAVMLVSPVD 85
          +V RG +++ V  ++
Sbjct: 69 VVIRGNSIVTVEALE 74

[Close]

BLAST of CmaCh14G010150 vs. TAIR 10
Match: AT2G23930.2 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 55.1 bits (131), Expect = 5.5e-08
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 15 VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDETIEFLRDSDDPLKTTDQTRRLGLIVCRG 74
          +DK +Q+KL   R VTGTL+G+DQ +NLV+D T+E        +   D+T  +G++V RG
Sbjct: 1  MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGMVVIRG 60

Query: 75 TAVMLVSPVD 85
           +++ V  ++
Sbjct: 61 NSIVTVEALE 61

The following BLAST results are available for this feature:

BLAST of CmaCh14G010150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI54	2.7e-44	92.55	Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1	[more]
Q9UK45	8.0e-28	59.78	U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV...	[more]
Q9CQQ8	2.3e-27	57.61	U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 S...	[more]
Q54HF6	3.4e-26	58.89	Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX...	[more]
O74499	1.6e-23	53.19	U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of CmaCh14G010150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J3M9	1.0e-46	100.00	sm-like protein LSM7 OS=Cucurbita maxima OX=3661 GN=LOC111482381 PE=3 SV=1	[more]
A0A6J1F6X2	4.0e-46	98.97	sm-like protein LSM7 OS=Cucurbita moschata OX=3662 GN=LOC111441416 PE=3 SV=1	[more]
A0A6J1KGY2	5.2e-46	97.94	sm-like protein LSM7 OS=Cucurbita maxima OX=3661 GN=LOC111493122 PE=3 SV=1	[more]
A0A6J1G9G2	5.2e-46	97.94	sm-like protein LSM7 OS=Cucurbita moschata OX=3662 GN=LOC111452019 PE=3 SV=1	[more]
A0A6J1DI46	1.5e-45	97.94	sm-like protein LSM7 OS=Momordica charantia OX=3673 GN=LOC111020268 PE=3 SV=1	[more]

BLAST of CmaCh14G010150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983896.1	2.1e-46	100.00	sm-like protein LSM7 [Cucurbita maxima]	[more]
XP_022934168.1	8.2e-46	98.97	sm-like protein LSM7 [Cucurbita moschata] >XP_023526539.1 sm-like protein LSM7 [...	[more]
XP_022948303.1	1.1e-45	97.94	sm-like protein LSM7 [Cucurbita moschata] >XP_022948305.1 sm-like protein LSM7 [...	[more]
XP_022152570.1	3.1e-45	97.94	sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 ...	[more]
XP_020260133.1	5.3e-45	95.88	sm-like protein LSM7 isoform X2 [Asparagus officinalis] >ONK81825.1 uncharacteri...	[more]

BLAST of CmaCh14G010150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03870.2	1.9e-45	92.55	Small nuclear ribonucleoprotein family protein	[more]
AT2G03870.1	1.9e-45	92.55	Small nuclear ribonucleoprotein family protein	[more]
AT2G23930.1	4.5e-10	40.00	probable small nuclear ribonucleoprotein G	[more]
AT3G11500.1	1.0e-09	41.33	Small nuclear ribonucleoprotein family protein	[more]
AT2G23930.2	5.5e-08	38.57	probable small nuclear ribonucleoprotein G	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 9..82 e-value: 3.4E-23 score: 93.1
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 10..82 e-value: 9.2E-20 score: 70.1
None	No IPR available	GENE3D	2.30.30.100		coord: 1..92 e-value: 7.4E-32 score: 111.4
None	No IPR available	PANTHER	PTHR10553:SF30	BNAA06G33630D PROTEIN	coord: 3..97
IPR044641	Sm-like protein Lsm7/SmG	PANTHER	PTHR10553	SMALL NUCLEAR RIBONUCLEOPROTEIN	coord: 3..97
IPR017132	Sm-like protein Lsm7	CDD	cd01729	LSm7	coord: 5..93 e-value: 5.07041E-58 score: 173.156
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 11..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G010150.1	CmaCh14G010150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0120115	Lsm2-8 complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0071004	U2-type prespliceosome
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding