CmaCh14G010090 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G010090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr14: 5314399 .. 5316902 (-)
RNA-Seq Expression	CmaCh14G010090
Synteny	CmaCh14G010090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCCTATGGTAACTGGGTTCATGAATTATGGTCAACAAACAGTACGAGCTGCAAGGTACATTGGTCAGGGTTTCATTATTACTTTATCCCATGCAAATCGTTTGCCTGTAACTATTCAATATCCTTACGAAAAATTAATCGCATCGGAGCGTTTCCGCGGTCGAATCCATTTTGAATTTGATAAATGCATTGCTTGTGTAGAGAGATTTCAAATTTTTATTTTTTAAAGATTTGAGAGGTTGAATCAAAAGTATAATAAAATAGATATTTTAAAAATATAAATATTAAAATAGAAACCAACTTAAAAGTCTTAGTGACATTCTAATGTAATTGATTTGAAGTATGAGCTCTAAAGTAAATGTAACCAATAAAATAAAAGGATTATAGAAACAAAGGATTCCAGTTCAACGAGCCTAATTCTAATTGTTTTGTTCCGAAGTAAATCACGAGGCGGTTCGTCCTATTCAGATATTCACGTCCTATTCACAGGAATGCCAACAAGCGTCTATTATTGAATTCACCCGACCCGATAGTACCCCATTTTTGGAACGTCCAATGCCAAAGTCACAGGGAGGCTCCCGATTTTAGGTGTGGTCCATTTTTGGCTATACATACATTTTCAAAAAAAAACTCTTCAAGGCTAATTCTTGTAGGTGTTTCTTCACAATAATTATGGTGATAATTATAATACAGAAAATGCCAATTCAAATTAAATGTATTGAAAACAATGTTCCTCCATGGATCAGAATTCAAAATACCCCCATTTTCATCCATTAAATAATATTTAAGTACTTGAAAAGTCTGTTTTAAATTGTCAAGTTGCAAATATTTAGTTAGGGAGATCGGATTATGAGTTATGACACTATAATTAGGGGCCGTCCCTAAAGGTCCCTAAAGTCCTAACGAATTCCTAATTTCAATTAATACTTTCTCCATTGGTATGAAATATTTTGAAAAAGCCCAAAGCAAAATGTACCATCAACGGGAGACACAAGCCCAAAGTAATAGTCCAGTGTTTGAAGGTCAGGGAATAGGGAATATCGTAAATTACCTCGTGAATGATACCGATAGCGAGAGAAGTTCAAGAATTTCTTGAGTAGATGATTTAGATTAAAAAAAAAATTGAATTTAAAAAATGTTAAATGTCACATTATTAACTTTAAATATTTAAAATAATTTCTTTCCATCCCAAAAATTTTAAGAATGGGATCATCCAATTTTGAGATAGTAATAGATTAGGCTATGAAGTGATTAGCAAATGAATTATGAAAATGGTGAGACAGCCAAGTGTTAATTAAGGATATATTTATATATATTATTCACTAATCGATCATCTCACAATAAAACCACTCATAAACGAAAATTCTTCCCAATATAAATACCAACACCGAAGCAATCAATCTCTCAAATTACATCTCACTCCACTCCTTGCCTCATTGCAGGTAGTAGGCCGCGACAGAGAGCAACGAAGCGCCAATGGCAGAGCCGATTGCTGGAAGGCCGGCAGCGGCACCGCTGCTTGGTCCAGGTGCTGGAGCCAACGCCTCGTCGTGAGCCACGACGGCGCTGACGGTTGCGGCAGCGAAGAGGACGGCGCAGGCGATCTTCTTCATCTCCATTGCGATTTATTAGGTTTTTTTTTGTTTTCGGTTTTGGATCTGGATTTGTGCGGCGTTATCCGGTGAAGAACTCGAGAAGGATCACCGAAATACGCCTTCGCTTTGGAAATTGCTGCCTGAGGAAATGAGATGGAATCGATTCGATTTATAGGTGGAAACTGCAGCGATTTTCGGAGACAGGTAAGTTTCTATGGTGCTTTGATCTTGAATTGCAGAGCTATATTTAGAACAAACTTCCTGATTCGTGGTGCTGAAATTAGGTTTCAATTTGATCGGTTCTCTCTGTTTCCATGATTCTGGGAAACCGTTTTTGTTTTATTTGCCTTTTCTTTTCTTTAATTATTTATGATGAAAAAGAAAACAAAAAATAAAGATAAATATATTTGAATAAAAGTTAAATATTTAGTCTAATTTTTAGGTTTATATTTATTTATTCGTAAATTTTTTTAATTTTGTGTTTAATAGTCAATTCATCCATTCGGTTTCTCATATAATAATTTATAAGCATAAAATTCACTTTTATAATTGATAAATCAATTAATCTTTAATTTTTTTTAGAGTCTATTACACACAAAATTTAATATTCATCTCAATTTTATTTTTTTTAATTTTTTTTTAGTTATATCCACTCGTTGAAACCGGAAAAAAAAGAAAAAAGTTTATTATTGTAGTTTTGTTTATTTTTAATATTTCAAAATTTCACAATGCAATTTAAAAAATTAATTTTCTTTTAGTTCAAAAGATATTTCTTTTTTTTTCTTCAAACAACCAAATAAATAGGAAAGAGATGTTAATTCTTATTACATTAATGCTTATATGAAGTTTGTTGTTTGTATCATTCAGAAAATTTGACAGATGAAACGTATCGACATTTTGTTTGA

mRNA sequence

ATGTTCCCTATGGTAACTGGGTTCATGAATTATGGTCAACAAACAGTACGAGCTGCAAGCAATCAATCTCTCAAATTACATCTCACTCCACTCCTTGCCTCATTGCAGGTAGTAGGCCGCGACAGAGAGCAACGAAGCGCCAATGGCAGAGCCGATTGCTGGAAGGCCGGCAGCGGCACCGCTGCTTGGTCCAGGTGCTGGAGCCAACGCCTCGTCGTGAGCCACGACGGCGCTGACGGTTGCGGCAGCGAAGAGGACGGCGCAGGCGATCTTCTTCATCTCCATTGCGATTTATTAGGTTTTTTTTTGTTTTCGGTTTTGGATCTGGATTTGTGCGGCGTTATCCGGTGGAAACTGCAGCGATTTTCGGAGACAGAAAATTTGACAGATGAAACGTATCGACATTTTGTTTGA

Coding sequence (CDS)

ATGTTCCCTATGGTAACTGGGTTCATGAATTATGGTCAACAAACAGTACGAGCTGCAAGCAATCAATCTCTCAAATTACATCTCACTCCACTCCTTGCCTCATTGCAGGTAGTAGGCCGCGACAGAGAGCAACGAAGCGCCAATGGCAGAGCCGATTGCTGGAAGGCCGGCAGCGGCACCGCTGCTTGGTCCAGGTGCTGGAGCCAACGCCTCGTCGTGAGCCACGACGGCGCTGACGGTTGCGGCAGCGAAGAGGACGGCGCAGGCGATCTTCTTCATCTCCATTGCGATTTATTAGGTTTTTTTTTGTTTTCGGTTTTGGATCTGGATTTGTGCGGCGTTATCCGGTGGAAACTGCAGCGATTTTCGGAGACAGAAAATTTGACAGATGAAACGTATCGACATTTTGTTTGA

Protein sequence

MFPMVTGFMNYGQQTVRAASNQSLKLHLTPLLASLQVVGRDREQRSANGRADCWKAGSGTAAWSRCWSQRLVVSHDGADGCGSEEDGAGDLLHLHCDLLGFFLFSVLDLDLCGVIRWKLQRFSETENLTDETYRHFV

Homology

[Close]

BLAST of CmaCh14G010090 vs. NCBI nr
Match: KAG6581582.1 (hypothetical protein SDJN03_21584, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.1 bits (362), Expect = 9.2e-31
Identity = 66/68 (97.06%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 37  VVGRDREQRSANGRADCWKAGSGTAAWSRCWSQRLVVSHDGADGCGSEEDGAGDLLHLHC 96
           VVGRDREQRSAN RADCWKAGSGTAAWSRCWSQRLVVSHDGADGCGSEEDGAGDLLHLHC
Sbjct: 32  VVGRDREQRSANDRADCWKAGSGTAAWSRCWSQRLVVSHDGADGCGSEEDGAGDLLHLHC 91

Query: 97  DLLGFFLF 105
           DLLGFF F
Sbjct: 92  DLLGFFSF 99

[Close]

BLAST of CmaCh14G010090 vs. NCBI nr
Match: KAG6577525.1 (hypothetical protein SDJN03_25099, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-23
Identity = 60/83 (72.29%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 34  SLQVVGRDREQRSANGRADCWKAGSGTAAWSRCWSQRLVVSHDGADGCGSEEDGAGDLLH 93
           SL VVG D EQRSA+ RADCWKA SG A WSRC S+RL++SH G DGCGSEEDGAGDLLH
Sbjct: 17  SLGVVGSDGEQRSADERADCWKANSGGAGWSRCRSRRLILSHGGGDGCGSEEDGAGDLLH 76

Query: 94  LHCDLLGFFLFSVLDLDLCGVIR 117
            HCD    FLFSV  +DLCG IR
Sbjct: 77  FHCDFEICFLFSV--MDLCGGIR 97

[Close]

BLAST of CmaCh14G010090 vs. NCBI nr
Match: KAG6583571.1 (hypothetical protein SDJN03_19503, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-19
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 38  VGRDREQRSANGRADCWKAGSGTAAWSRCWSQRLVVSHDGADGCGSEEDGAGDLLHLHCD 97
           VGRD EQRSA+ RADC K G G+A+WSRCWS+ L++S+DGADGCGSEE+GAGDLLHLHCD
Sbjct: 7   VGRDGEQRSADERADCRKPGGGSASWSRCWSRCLIMSNDGADGCGSEENGAGDLLHLHCD 66

Query: 98  LLGF 102
            L F
Sbjct: 67  YLLF 70

[Close]

BLAST of CmaCh14G010090 vs. NCBI nr
Match: KAG6606874.1 (Polyadenylate-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.1 bits (261), Expect = 4.7e-19
Identity = 55/88 (62.50%), Postives = 62/88 (70.45%), Query Frame = 0


Query: 29  TPLLASLQVVGRDREQRSANGRADCWKAGSGTAAWSRCWSQRLVVSHDGADGCGSEEDGA 88
           T + A   V GRD EQRSA+ RADC KAG G A WSRCWS+ L++S+DGAD CGSEE+GA
Sbjct: 689 TVMKAKATVEGRDGEQRSADERADCRKAGGGAAGWSRCWSRCLIMSNDGADRCGSEENGA 748

Query: 89  GDLLHLHCDLLGFFLFSVLDLDLCGVIR 117
            DLLHLHCD   F LF       CGVIR
Sbjct: 749 VDLLHLHCD---FLLFG------CGVIR 767

The following BLAST results are available for this feature:

BLAST of CmaCh14G010090 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G010090 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G010090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581582.1	9.2e-31	97.06	hypothetical protein SDJN03_21584, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6577525.1	1.1e-23	72.29	hypothetical protein SDJN03_25099, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6583571.1	2.8e-19	75.00	hypothetical protein SDJN03_19503, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6606874.1	4.7e-19	62.50	Polyadenylate-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmaCh14G010090 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G010090.1	CmaCh14G010090.1	mRNA