CmaCh14G010010 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G010010
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Cellulose synthase family protein isoform 1
Location	Cma_Chr14: 5258780 .. 5260441 (+)
RNA-Seq Expression	CmaCh14G010010
Synteny	CmaCh14G010010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAGAACCGGCTGGATTATATGGTGAGCTTGTTTTATATATATATATATATATTTTTTTTTTAATGTGTTTGTGAATATGTTATTGTGTGGACATGGTGGAGAAAAGGATGGTTTTGATGTTTGTTTCTCGGGAAAATGACCGAGAAAATGAGAAGGGTTGGTTGGTGAGAGAATCCGTTCATGATTCCTTTTGTTGGAGTCATATGTTTTTTTTGTTCAATTAAGGGAGTGTTTTTACTATCTATGATATTTGGAGGAATTATCGTATATTGACCTGACCTAAAGTAAAAGTTCTTTCATCGTTCTCCTTCATTTGAACCTTTATTTTTTGAGGTATTTCACTTTTATAGTCGATAATATAAAAGATCAACTCAAAATATTGAACCTTTTCCAATCTTACTCCTGAATCGGAACAAAAATAAAAACAGTTGAGTCCGTGTGATCGTCTACTTTTCCAGTGAGATGGAAAATTAGCAACTCTTATTTCGTTTGGCCCTAAATTTTTTTGAATTGAGCGGGAGGTCGATCCTCTTTTTGAGTGTGTTTTTTAGTTTGATTACTCCTAACACAGCACACTTTATTAAAAAGACTGAACATTCAGGCGAGTCATTTAGTGATGTAGTGCAAAGTGAGCTTAGTACGTCCTAAGTAGATGGAGATGAGAGCATTGTTAATTTCTCATAGAACATGCATGAAAGTTTTTAACTATAGAAAGTTCTCCATCTTTGTCTTCGTTACATCAGTAGATACTTCTCATCAAATCGAGACAGGTTTTTAATTATTTAAATATTTATTAAAATCAGACATGTAATCTATCCTACATTTTTGTAAGTGTTAAGGATAGTTGACCATTCATTATAAGGCAAATATCTAGATATTTGCCTTACATTATGGGTTACCATATTTGCTCTTTTATTAAATGCAAATATATTGTATTCATTTATTATTCTTTTCTTTTATCGCTATTTCCTTATTATTTCTAATTTATCTTATTTTTGTATTCTGTAAATGATTATAAATAAGAGAACTCTCACCACCATTTGAGTGTGGTGGATTAATCAAACATTCACAGTAAGGTTTATTGTAGGTGAAAATATTTGTGTAATCCACCTATCATTTACGTGTGAAAATTATCTTATTTATAATCAAATAATTCTTTTTGTAATTATTTATTTTTGACAGTAGTTGGAGGCTGCTAGAGGAAATCAAAGGGAGCGGCAAGTCACCAAAGAGATCGTATACATCTTTCTCGTCAAGTGGGGCCCACTCACGAGCGATTATCACACATCGTCCGTTGATCTGTCTCCAAGAAGTCTGGAGAAGCACGGCCGTCCGATGAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTCCTCGAGAGAATGGACAAGATTGAGGATAGAGTCCTCAAGGTAAAACCACTCATAAATTATAATATTATAATATTAAAATATTAAAATATTTGAAATTTAATTTAATTTTGTAAAGAAATATTTAGTTTTTGGTGTGTTGAATGTTGAACAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTTTTCAACACTGTATCACCTGGACGGGAAAGATTTGA

mRNA sequence

CGAAGAACCGGCTGGATTATATGGTGAGCTTGTTTTATATATATATATATATATTTTTTTTTTAATGTGTTTGTGAATATGTTATTGTGTGGACATGGTGGAGAAAAGGATGGTTTTGATGTTTGTTTCTCGGGAAAATGACCGAGAAAATGAGAAGGGTTGGTTGGTGAGAGAATCCGTTCATGATTCCTTTTGTTGGAGTCATATGTTTTTTTTGTTCAATTAAGGGAGTGTTTTTACTATCTATGATATTTGGAGGAATTATCGTATATTGACCTGACCTAAAGTAAAAGTTCTTTCATCGTTCTCCTTCATTTGAACCTTTATTTTTTGAGTAGTTGGAGGCTGCTAGAGGAAATCAAAGGGAGCGGCAAGTCACCAAAGAGATCGTATACATCTTTCTCGTCAAGTGGGGCCCACTCACGAGCGATTATCACACATCGTCCGTTGATCTGTCTCCAAGAAGTCTGGAGAAGCACGGCCGTCCGATGAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTCCTCGAGAGAATGGACAAGATTGAGGATAGAGTCCTCAAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTTTTCAACACTGTATCACCTGGACGGGAAAGATTTGA

Coding sequence (CDS)

ATGAACGACGCAGTCAAAGTCACTGAACTCAAAGGAAGCCTCCTCGAGAGAATGGACAAGATTGAGGATAGAGTCCTCAAGCTTTGTTTGCAAGTAGAGGGAGAGATTGAAAGGGAGAGGGAGATGATAATGGTTGAGAAGAGTAGGAAGAAGCCTAAGAAGAGCTTTAAACAACTTTTTCAACACTGTATCACCTGGACGGGAAAGATTTGA

Protein sequence

MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLFQHCITWTGKI

Homology

[Close]

BLAST of CmaCh14G010010 vs. ExPASy TrEMBL
Match: A0A6J1J7I6 (uncharacterized protein LOC111481961 OS=Cucurbita maxima OX=3661 GN=LOC111481961 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1   MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF 60
           MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF
Sbjct: 52  MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF 111

Query: 61  QHCITWTGKI 71
           QHCITWTGKI
Sbjct: 112 QHCITWTGKI 121

[Close]

BLAST of CmaCh14G010010 vs. ExPASy TrEMBL
Match: A0A6J1F1D1 (uncharacterized protein LOC111441483 OS=Cucurbita moschata OX=3662 GN=LOC111441483 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.8e-26
Identity = 64/70 (91.43%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1   MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF 60
           +NDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIERE+EMIMVEKSRKKPKKSFKQLF
Sbjct: 68  INDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREKEMIMVEKSRKKPKKSFKQLF 127

Query: 61  QHCITWTGKI 71
           QHC+T +GK+
Sbjct: 128 QHCMTGSGKM 137

[Close]

BLAST of CmaCh14G010010 vs. ExPASy TrEMBL
Match: A0A0A0LCD9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G695850 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF 60
           +N  VKV ELKGSL+ERMD +EDRVLKLC+QVEG++ERE++MIMVEK  +KPK+SFKQL 
Sbjct: 68  INHVVKVAELKGSLVERMDNLEDRVLKLCIQVEGDLEREKDMIMVEKKERKPKRSFKQLV 127

Query: 61  QHCITWTG 69
           Q C+T  G
Sbjct: 128 QRCMTGQG 135

[Close]

BLAST of CmaCh14G010010 vs. ExPASy TrEMBL
Match: A0A6J1KAC7 (uncharacterized protein LOC111493115 OS=Cucurbita maxima OX=3661 GN=LOC111493115 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.4e-17
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF 60
           +N  VKVTEL+GSL+ERMD IEDRVLKLCLQ EGEIE+E+EMIMVEK  KKPKKSFKQL 
Sbjct: 68  INHVVKVTELRGSLVERMDNIEDRVLKLCLQTEGEIEKEKEMIMVEKD-KKPKKSFKQLV 127

Query: 61  QHCITWTG 69
           Q C+T  G
Sbjct: 128 QLCMTGQG 134

[Close]

BLAST of CmaCh14G010010 vs. ExPASy TrEMBL
Match: A0A6J1GBV3 (uncharacterized protein LOC111452747 OS=Cucurbita moschata OX=3662 GN=LOC111452747 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.5e-17
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1   MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF 60
           +N  VKVTEL+GSL+ERMD IEDRVLKLCLQ+EGEIERE+EMIMVEK R KPKKSFKQL 
Sbjct: 68  INHVVKVTELRGSLVERMDNIEDRVLKLCLQIEGEIEREKEMIMVEKDR-KPKKSFKQLI 127

Query: 61  QHC 64
           Q C
Sbjct: 128 QLC 129

[Close]

BLAST of CmaCh14G010010 vs. NCBI nr
Match: XP_022983353.1 (uncharacterized protein LOC111481961 [Cucurbita maxima])

HSP 1 Score: 138.3 bits (347), Expect = 2.6e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1   MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF 60
           MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF
Sbjct: 52  MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF 111

Query: 61  QHCITWTGKI 71
           QHCITWTGKI
Sbjct: 112 QHCITWTGKI 121

[Close]

BLAST of CmaCh14G010010 vs. NCBI nr
Match: XP_023528604.1 (uncharacterized protein LOC111791474 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.1 bits (318), Expect = 6.0e-26
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF 60
           MNDAVKVTELKGSLLER+DKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQL 
Sbjct: 68  MNDAVKVTELKGSLLERLDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLL 127

Query: 61  QHCITWTGKI 71
           QHC+T +GKI
Sbjct: 128 QHCMTGSGKI 137

[Close]

BLAST of CmaCh14G010010 vs. NCBI nr
Match: XP_022934271.1 (uncharacterized protein LOC111441483 [Cucurbita moschata])

HSP 1 Score: 126.7 bits (317), Expect = 7.8e-26
Identity = 64/70 (91.43%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1   MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF 60
           +NDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIERE+EMIMVEKSRKKPKKSFKQLF
Sbjct: 68  INDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREKEMIMVEKSRKKPKKSFKQLF 127

Query: 61  QHCITWTGKI 71
           QHC+T +GK+
Sbjct: 128 QHCMTGSGKM 137

[Close]

BLAST of CmaCh14G010010 vs. NCBI nr
Match: KAG6581574.1 (hypothetical protein SDJN03_21576, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1   MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF 60
           +NDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF
Sbjct: 68  INDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF 127

Query: 61  QHCITWTGKI 71
           QHC+T + K+
Sbjct: 128 QHCMTGSRKM 137

[Close]

BLAST of CmaCh14G010010 vs. NCBI nr
Match: KAG7018080.1 (hypothetical protein SDJN02_19946 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.9 bits (307), Expect = 1.1e-24
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1   MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF 60
           +NDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF
Sbjct: 68  INDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREMIMVEKSRKKPKKSFKQLF 127

Query: 61  QHCITWTGKI 71
           QHC+  + K+
Sbjct: 128 QHCMNGSRKM 137

[Close]

BLAST of CmaCh14G010010 vs. TAIR 10
Match: AT1G07985.1 (Expressed protein )

HSP 1 Score: 46.6 bits (109), Expect = 9.5e-06
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 1   MNDAVKVTELKGSLLERMDKIEDRVLKLCLQVEGEIEREREM-IMVEKSRKKPKK 55
           M    + TE KG+LLER++ +E++VLKLC Q E E+E ER+     +K +K PKK
Sbjct: 63  MEQVREETERKGTLLERLNNVEEQVLKLCSQFEEEVEEERKREDKTDKEKKTPKK 117

The following BLAST results are available for this feature:

BLAST of CmaCh14G010010 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G010010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7I6	1.3e-29	100.00	uncharacterized protein LOC111481961 OS=Cucurbita maxima OX=3661 GN=LOC111481961...	[more]
A0A6J1F1D1	3.8e-26	91.43	uncharacterized protein LOC111441483 OS=Cucurbita moschata OX=3662 GN=LOC1114414...	[more]
A0A0A0LCD9	1.4e-17	69.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G695850 PE=4 SV=1	[more]
A0A6J1KAC7	2.4e-17	76.47	uncharacterized protein LOC111493115 OS=Cucurbita maxima OX=3661 GN=LOC111493115...	[more]
A0A6J1GBV3	5.5e-17	80.95	uncharacterized protein LOC111452747 OS=Cucurbita moschata OX=3662 GN=LOC1114527...	[more]

BLAST of CmaCh14G010010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983353.1	2.6e-29	100.00	uncharacterized protein LOC111481961 [Cucurbita maxima]	[more]
XP_023528604.1	6.0e-26	92.86	uncharacterized protein LOC111791474 [Cucurbita pepo subsp. pepo]	[more]
XP_022934271.1	7.8e-26	91.43	uncharacterized protein LOC111441483 [Cucurbita moschata]	[more]
KAG6581574.1	3.0e-25	91.43	hypothetical protein SDJN03_21576, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7018080.1	1.1e-24	90.00	hypothetical protein SDJN02_19946 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmaCh14G010010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07985.1	9.5e-06	47.27	Expressed protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G010010.1	CmaCh14G010010.1	mRNA