CmaCh14G009860 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G009860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RNA polymerase sigma factor sigD
Location	Cma_Chr14: 5176896 .. 5181146 (+)
RNA-Seq Expression	CmaCh14G009860
Synteny	CmaCh14G009860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGATGCTAAATCTATCTACTTGGCCGATTTTTCTTCACACCCTTTTCTCGAAGGATGTGAATGCTTCAATAGCATCCGCACACATTGACATCCATCCTTTTGATCCTTTTATCCATTCGCGACAAGAACAAATATCAGAATCCCAAGTGCTAAAAAAGCCCAAACTTCTTAAAAGCCTTTCCCATTCTCGCTTCTTTCCCTTCTCTGCTTATGGCCACTACCAGTAGCTTATGTTCATTACCGGCTCAATCCCCAACCCTCCCATCCATTTCTCTCTCATCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCACCATTTCCCCTTTCTCCACCAAATTAGCACCCAATTTCATCAGCAATGATACACTAACCCACCCACCGCCGTCGGAGGCGGCGGCGGTTCTGGCGGTAGAAGCGGCAAGAGAACATGTTCTGGTGGAAGCCGGATGGCTTTCCAAGGATTGGAGATGCAAAAACCTTGAGAAAATGGAGCAGAGCTGTGGGGGTGATGGGAATGTAGCTTGGAAAAAGAGGAGAAGGAAAAGGAGGAAAGAGGTGGGGGAGACAGCCGAGGAAAATTGGGTTGCTTTGTCCAGTGGCCCCTTGAGACCTGGACATTTGAGCTCAAAAGAAGAAGCAGAGCTTTGTCTGTGTCTAAAGGTGAGTCCTAGAAAAAAAATTCATAAGTTGTTCTTTAATCCTTGTCTATGCCACCATTTACTTCTCTTGAGAGCTTTCTTGAGGGGAATACATATAATTTGTATGCAAAAGACTGCAGAACTCTCTTCTTCTCCTTTATAAAGTGCTTTTAAGGTATCATAGTAGAATTTAGTTTGTTGCATTAGTATCCTTTAAATCATGTAAAAGTGTCTGCCATGTTCATATGTTAAAGAAAGCTTCTGCATATTATAAACTCTTCACAGGAGGCAGCACAGATTGAAAAGACAAAAACTAGAATCATGGAGACTCAAGATCATGAACCTACAAATAAGCAATTGGCCATTGCCATGGGCACCAAATTAGGGTATATAGATAGAGTTCTCTGGAGGGCAAGAGAATCGAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATTTCGATTGCAGCTCCATATCAGGGCAAAGGGATTAGCCTGCAAGACCTCACTCAGGTAGGTTAATGCACATATTACTCTCTTTTGGATTGTTGTTTTCTGTAGTATGCTGAAAGGTTTTATTTGTTTTTTGTAGGAAGGGAACATTGGTCTTCTTAAAGGAGCTGAAAGATTTGAACCAAATAGAGGACATAAATTATCAACTTATGCTTATTGGTGGATAAGACAAACTATCATTCAAGCGTTGGATAAAAAGTCGAGGCTTGTTCGACTGCCGGTAAGATACTGCCTCAATTCTCATTTGTCACATTTTGATTGTCATGTAGAAGTTTCAAATCATATTTAGTTTTTTATGCAGATTTTGCATTTGTAGTTATGGCACTTCTGAATACATTGAACATAAGAACATAATTTGTGTCCTGTTTACCTTTCTTTTATTCATTTATAGGGTCCTGGTCAGTCACTTTTCTGGGCCTAGATCGATAAGTGGAAGTCATAGAAAAGAGATCTTTCTTTTTGTATCTCAGATCAAGAGGAAGGGTAGCTTCTTAAGCTGATCTATATATATTTATATATATAAAAGGATTCGCTGTCTTTTAACCATATGTTCTTCTTTGTCAATGCTACATTGGACCTAAAGGAAAAGGCGCTACTTAGCCCTACACTAGTAGAAGTCAGCGGCAGAGTTAGCCTACTAGAAATCGCTCGTCCTAGGTTCTATGTTTATCAGTAGGCTTCTATGATAAAAAAATTTTTGTCATTACCCGTTCGGTCTTATTTTACTTCATTGGAGGCCCTTTTTGTGGGTTTCCTCCTTTTATGGGCTCTCTTTTTGTATGCCCTTGTGTTCTTTCATTTTTTTTTTCATTAAAAACTTGGTTGTTTGTCAAACTAAGTTGGATTTATGACGAGAATCATATCGAAACAATAAGAACAAGATGTGCCAAGGCGATAAGGAAGAGCCTTTTTGTTATATAACCTTTTTTCACAAAAAATGGAAAGGTAATTTCTACGAAGTTTTGTTAGCTTAGGATTTGAAGTATGGGAAGGTGAACGGGTAATAATTGAATGCTTGGTTAGCTCGCTGTGTGCAGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGCAAATAATCATCTTGGCATAAAGTTATCACGAGTACCCACCCACAAGGAAGTCGCTAAGTATCTGAAAGTTCCTGTTTCAACTGTAAGACTGGTTACAGAAAGGAGTAAGCGTCCGATTTCAATCAATCGACCAGTAAACGACCGAGGTTGCTTAACCCTGCAGGTACCTTTTTACTTAAGTCGAGCTTAGTCTTTTACTGAAGGAATACTTACGTTTTTGTTTTTCTTCATACCTGCTGCTACAATGACATTGAATTGAAGTTTCAATCTTTCATGAAGGATGAGAGCCTTGTTTGCAACTGGCTCTTGATCTTTAGGAACTTTGATTTAGGCTCTCTTCCATTTGTTCATAAAACTAGTAATTGAAGACATTTCCCTCATCCTCATCTATGATGAAATAATGTTAAGTTCCTTTTCTTGATTAATATCTCGAAAGGAGAGGATGAACTTCCAAAAGGATTGTGTAACGTATCGCCGATAGCCTCATGGTTCTAAAATGCGTTTGTTAGGGAGAGCTTTTCACACCCTTATGAGGAATCCTTTGTTTTCCCTCTTTAACCGATATGGGATCTCACAATCCACCCCCTTGGGGCCCAGCGTCCTCAAGGGGGTGGAATCCTTTGTTTAACGTATCGCCGATAGCCTCATGGTTTTAAAATGCGTTTGTTAGGGAGAGCTTTTCACACCCTTATAAGGAATCCTTTGTTTTCCCTCTTTAACCGATATGGGATCTCACAATCCACCCCCTTGGGGCCCAGCGTCCTCAAGGGGGTGGAATCCTTTGTTTAACGTATCGCCGATAGCCTCATGGTTTTAAAATGCGTTTGTTAGGGAGAGCTTTTCACACCCTTATAAGGAATCCTTTGTTTTCCCTCTTTAACCGATATGTGATCTCACAATCCACCCCCTTGGGGCCCAGCGTCCTCGCTGGCACACCGTTCGGTACCTGACTCTGATACCATTTGTAACAGCCCGAACCCACCGCTAGCAAATACTGTCCGTTTTGGCTTGTTATGTATCGTCGTCAGCCTCACGGTTTTAAAACACGTCTGTTGGAGAGAGGTTTCCACACCCTTATAAGGAATGCTTTGTTCCCTTTTCTAATCGATGTGGGATCTCATGAACGGCATATCAATAAGTCGTATTTTCAATTAGATTGCTACACTTGGGGTTTGCTTTTATATATATGTGCGCATGCGCTAGTGCCTGAGCCATCTTATTCGACCTCAACTAAATTTATCGGATAACTACCTCACTCTGCAATATTTGGCATCTGACACATAATTGGATATTCAATCCTAGGTTGATATCCACCTAGCAGCGAACGTCTATTGTCATGTTTTTTTTTTCGCGACTACGATGAGATGTTGAAATACTATATTCTTTATGTTCTGCAGGAGATCATGCCAGGGCCAGACAATTTGACTCCAGAGAATATGGTAATAAGAAAACTGATGAAGCAAGAACTGAAGAGGCTTCTTAGTACTCTAAGCAAAAGAGAAGCACACATATTGACCTTGTACTTTGGCCTCAATGGACAGATTCCTCAGTCGTTTGAGGAGATAGGAAAGTCGTTGAATCTTTCTCGAGAGACGATTCGACAAACCAATATTGCCACATTGGCGAAACTAAAGAAGTCTAACATTCTGGACTATCTTAAAGATTATCTAGTGTAGATATTTCAAGCTATGAGGAAAAGTTACAAGCAAAGATTTATGAACTATTGAAGGATTTGCAGAGTATTATTTGTATGCATCCAGGTTTAATTCTCTGTAGTACATCAAAAGGAGCTATCCAAACGCTTGCAAACGAGTTGAAACAGGTTTGGTCGATGCACGTAGAACGGTCGAAGAACCGATCTTTTGTTTGAATAATCAAGTGCTGGTGTATGTAATAAATAAGAAACCGAGTCGATTGATGTTTAGATGATGTATTCTTATTGTTTTATAAAATTAAGTGCTGGTATGTGACATGAAGTTTATGATACCACTGAAAGCTGATTATAGAG

mRNA sequence

CTTGATGCTAAATCTATCTACTTGGCCGATTTTTCTTCACACCCTTTTCTCGAAGGATGTGAATGCTTCAATAGCATCCGCACACATTGACATCCATCCTTTTGATCCTTTTATCCATTCGCGACAAGAACAAATATCAGAATCCCAAGTGCTAAAAAAGCCCAAACTTCTTAAAAGCCTTTCCCATTCTCGCTTCTTTCCCTTCTCTGCTTATGGCCACTACCAGTAGCTTATGTTCATTACCGGCTCAATCCCCAACCCTCCCATCCATTTCTCTCTCATCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCACCATTTCCCCTTTCTCCACCAAATTAGCACCCAATTTCATCAGCAATGATACACTAACCCACCCACCGCCGTCGGAGGCGGCGGCGGTTCTGGCGGTAGAAGCGGCAAGAGAACATGTTCTGGTGGAAGCCGGATGGCTTTCCAAGGATTGGAGATGCAAAAACCTTGAGAAAATGGAGCAGAGCTGTGGGGGTGATGGGAATGTAGCTTGGAAAAAGAGGAGAAGGAAAAGGAGGAAAGAGGTGGGGGAGACAGCCGAGGAAAATTGGGTTGCTTTGTCCAGTGGCCCCTTGAGACCTGGACATTTGAGCTCAAAAGAAGAAGCAGAGCTTTGTCTGTGTCTAAAGGAGGCAGCACAGATTGAAAAGACAAAAACTAGAATCATGGAGACTCAAGATCATGAACCTACAAATAAGCAATTGGCCATTGCCATGGGCACCAAATTAGGGTATATAGATAGAGTTCTCTGGAGGGCAAGAGAATCGAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATTTCGATTGCAGCTCCATATCAGGGCAAAGGGATTAGCCTGCAAGACCTCACTCAGGAAGGGAACATTGGTCTTCTTAAAGGAGCTGAAAGATTTGAACCAAATAGAGGACATAAATTATCAACTTATGCTTATTGGTGGATAAGACAAACTATCATTCAAGCGTTGGATAAAAAGTCGAGGCTTGTTCGACTGCCGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGCAAATAATCATCTTGGCATAAAGTTATCACGAGTACCCACCCACAAGGAAGTCGCTAAGTATCTGAAAGTTCCTGTTTCAACTGTAAGACTGGTTACAGAAAGGAGTAAGCGTCCGATTTCAATCAATCGACCAGTAAACGACCGAGGTTGCTTAACCCTGCAGGAGATCATGCCAGGGCCAGACAATTTGACTCCAGAGAATATGGTAATAAGAAAACTGATGAAGCAAGAACTGAAGAGGCTTCTTAGTACTCTAAGCAAAAGAGAAGCACACATATTGACCTTGTACTTTGGCCTCAATGGACAGATTCCTCAGTCGTTTGAGGAGATAGGAAAGTCGTTGAATCTTTCTCGAGAGACGATTCGACAAACCAATATTGCCACATTGGCGAAACTAAAGAAGTCTAACATTCTGGACTATCTTAAAGATTATCTAGTGTAGATATTTCAAGCTATGAGGAAAAGTTACAAGCAAAGATTTATGAACTATTGAAGGATTTGCAGAGTATTATTTGTATGCATCCAGGTTTAATTCTCTGTAGTACATCAAAAGGAGCTATCCAAACGCTTGCAAACGAGTTGAAACAGGTTTGGTCGATGCACGTAGAACGGTCGAAGAACCGATCTTTTGTTTGAATAATCAAGTGCTGGTGTATGTAATAAATAAGAAACCGAGTCGATTGATGTTTAGATGATGTATTCTTATTGTTTTATAAAATTAAGTGCTGGTATGTGACATGAAGTTTATGATACCACTGAAAGCTGATTATAGAG

Coding sequence (CDS)

ATGGCCACTACCAGTAGCTTATGTTCATTACCGGCTCAATCCCCAACCCTCCCATCCATTTCTCTCTCATCACTTCCATCGCTCAAAACCCATCTTCCCCAACAACCCCATTTCACCATTTCCCCTTTCTCCACCAAATTAGCACCCAATTTCATCAGCAATGATACACTAACCCACCCACCGCCGTCGGAGGCGGCGGCGGTTCTGGCGGTAGAAGCGGCAAGAGAACATGTTCTGGTGGAAGCCGGATGGCTTTCCAAGGATTGGAGATGCAAAAACCTTGAGAAAATGGAGCAGAGCTGTGGGGGTGATGGGAATGTAGCTTGGAAAAAGAGGAGAAGGAAAAGGAGGAAAGAGGTGGGGGAGACAGCCGAGGAAAATTGGGTTGCTTTGTCCAGTGGCCCCTTGAGACCTGGACATTTGAGCTCAAAAGAAGAAGCAGAGCTTTGTCTGTGTCTAAAGGAGGCAGCACAGATTGAAAAGACAAAAACTAGAATCATGGAGACTCAAGATCATGAACCTACAAATAAGCAATTGGCCATTGCCATGGGCACCAAATTAGGGTATATAGATAGAGTTCTCTGGAGGGCAAGAGAATCGAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATTTCGATTGCAGCTCCATATCAGGGCAAAGGGATTAGCCTGCAAGACCTCACTCAGGAAGGGAACATTGGTCTTCTTAAAGGAGCTGAAAGATTTGAACCAAATAGAGGACATAAATTATCAACTTATGCTTATTGGTGGATAAGACAAACTATCATTCAAGCGTTGGATAAAAAGTCGAGGCTTGTTCGACTGCCGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGCAAATAATCATCTTGGCATAAAGTTATCACGAGTACCCACCCACAAGGAAGTCGCTAAGTATCTGAAAGTTCCTGTTTCAACTGTAAGACTGGTTACAGAAAGGAGTAAGCGTCCGATTTCAATCAATCGACCAGTAAACGACCGAGGTTGCTTAACCCTGCAGGAGATCATGCCAGGGCCAGACAATTTGACTCCAGAGAATATGGTAATAAGAAAACTGATGAAGCAAGAACTGAAGAGGCTTCTTAGTACTCTAAGCAAAAGAGAAGCACACATATTGACCTTGTACTTTGGCCTCAATGGACAGATTCCTCAGTCGTTTGAGGAGATAGGAAAGTCGTTGAATCTTTCTCGAGAGACGATTCGACAAACCAATATTGCCACATTGGCGAAACTAAAGAAGTCTAACATTCTGGACTATCTTAAAGATTATCTAGTGTAG

Protein sequence

MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHPPPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEVGETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLKDYLV

Homology

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BLAST of CmaCh14G009860 vs. ExPASy Swiss-Prot
Match: Q9ZSL6 (RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGD PE=2 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.0e-81
Identity = 190/452 (42.04%), Postives = 272/452 (60.18%), Query Frame = 0


Query: 1   MATT--SSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTI-SPFSTKLAPNFISNDTL 60
           MATT  ++  +    SP +P+IS    P L+T    QP  ++ SPFS KL+   +  DT 
Sbjct: 1   MATTIPTTATATMCPSPPVPTIS----PLLRTTHQCQPSPSLSSPFSIKLSTALVCGDTT 60

Query: 61  THPPPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRR 120
                               V+++     + W               G  + K+R+R+RR
Sbjct: 61  VD------------RVVDSSVMIK----PEKW---------------GIQSEKRRKRRRR 120

Query: 121 KEVG----ETAEENWVALSS----------GPLRPGHLSSKEEAELCLCLKEAAQIEKTK 180
           + VG    E  EE    + +          G  R G LS  EE +LCL LKE A++E   
Sbjct: 121 RRVGYERLEPEEEENAGVEAEAETISVPVVGASRSGFLSRLEEVQLCLYLKEGAKLENLG 180

Query: 181 TRIMETQDHEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKG 240
           T +   +++E  +  LA   G K    + +L R +E+R+++ RCY +LV+SIA  YQGKG
Sbjct: 181 TSV---EENEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKG 240

Query: 241 ISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQ 300
           ++LQDL QEG+IGLL+GAERF+P+RG+KLSTY YWWI+Q I++A+  KSRLV+LPG M +
Sbjct: 241 LNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWE 300

Query: 301 MVARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLT 360
           + A++AEA+N L  KL R P+ +E+A++L + VS VRL  ERS+ P+S++R  +  G +T
Sbjct: 301 LTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMT 360

Query: 361 LQEIMPGPDNLTPENMVIRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGK 420
           LQEI+ GPD   PE MV R+ MK E+++LL +L+ RE+ +L LYFGLNG+ P SFEEIGK
Sbjct: 361 LQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGK 414

Query: 421 SLNLSRETIRQTNIATLAKLKKSNILDYLKDY 436
           SL LSRE +RQ N   L KL+  + ++ LK Y
Sbjct: 421 SLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414

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BLAST of CmaCh14G009860 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 203.8 bits (517), Expect = 4.1e-51
Identity = 115/340 (33.82%), Postives = 199/340 (58.53%), Query Frame = 0


Query: 98  EQSCGGDGNVAWKKRRRKRRKEVGETAEENWVALSSGPL-RPGHLSSKEEAELCLCLKEA 157
           E S G D + A K + + R+     T  E+ + L    + R   L + EE EL   + + 
Sbjct: 65  EDSVGEDEDAAAKAKAKVRK-----TYTEDSIRLYLQEIGRIRLLRADEEIELARQIADL 124

Query: 158 AQIEKTKTRIMETQDHEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIA 217
             +E+ +  ++E  D  P++ + A A+ + L    R L+R R ++D++++   +LV+SIA
Sbjct: 125 LALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIA 184

Query: 218 APYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVR 277
             Y  +G+S QDL QEG++GL++ AE+F+  +G+K STYA WWIRQ I +A+  +SR +R
Sbjct: 185 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 244

Query: 278 LPGHMGQMVARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPV 337
           LP H+ + ++RI +    L  ++ R PT +E+A  +++ +  +R + + ++ PIS+  P+
Sbjct: 245 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 304

Query: 338 NDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQ 397
                  L + +   D  TPE+ V + L++++L+ +LSTLS RE  +L L +GL+    +
Sbjct: 305 GKEEDSRLGDFIEA-DGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMK 364

Query: 398 SFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLKDYL 437
           + EEIG+  N++RE IRQ     L KL+  N    LK+Y+
Sbjct: 365 TLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

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BLAST of CmaCh14G009860 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-48
Identity = 110/330 (33.33%), Postives = 193/330 (58.48%), Query Frame = 0


Query: 108 AWKKRRRKRRKEVGETAEENWVALSS-GPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRI 167
           A K RRR + K+   T +   + L   G +R   L + EE EL   + +  ++E+ + R+
Sbjct: 63  AAKSRRRTQSKKKHYTEDSIRLYLQEIGRIR--LLRADEEIELARKIADLLELERVRERL 122

Query: 168 METQDHEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISL 227
            E  + +P + + A A+   L      L   R ++D++++   +LV+SIA  Y  +G+S 
Sbjct: 123 SEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 182

Query: 228 QDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVA 287
           QDL QEG++GL++ AE+F+  +G+K STYA WWIRQ I +A+  +SR +RLP H+ + ++
Sbjct: 183 QDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETIS 242

Query: 288 RIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQE 347
           RI +    L  ++ R PT +E+A  +++ +  +R + + ++ PIS+  P+       L +
Sbjct: 243 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 302

Query: 348 IMPGPDNLTPENMVIRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLN 407
            +   D  TPE+ V + L++++L+++L +LS RE  +L L +GL+    ++ EEIG+  N
Sbjct: 303 FIES-DGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDDGRMKTLEEIGQIFN 362

Query: 408 LSRETIRQTNIATLAKLKKSNILDYLKDYL 437
           ++RE IRQ     L KL+  N    LK+Y+
Sbjct: 363 VTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

[Close]

BLAST of CmaCh14G009860 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 4.0e-46
Identity = 107/348 (30.75%), Postives = 194/348 (55.75%), Query Frame = 0


Query: 90  RCKNLEKMEQSCGGDGNVAWKKRRRKRRKEVGETAEENWVALSSGPLRPGHLSSKEEAEL 149
           R K LEK           +  K++R   +EV       ++ +++   +   L+ +EE EL
Sbjct: 224 RAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHEL 283

Query: 150 CLCLKEAAQIEKTKTRIMETQDHEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYS 209
              +++  ++E+ +T + E    +PT  Q A A G     + + +      +D++I+   
Sbjct: 284 SAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNI 343

Query: 210 KLVISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALD 269
           +LVISIA  YQG G++LQDL QEG  GL++GAE+F+  +G K STYA+WWI+Q + ++L 
Sbjct: 344 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLS 403

Query: 270 KKSRLVRLPGHMGQMVARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRP 329
            +SR++RLP HM +   R+ EA   L  +  + P ++E+A+   + +  +  V    K P
Sbjct: 404 DQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPP 463

Query: 330 ISINRPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKRLLSTLSKREAHILTLYFG 389
            S+++ +     L   E++  P+ +T E+++I++ M+Q+L ++L +L  RE  ++   FG
Sbjct: 464 RSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFG 523

Query: 390 LNGQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLKDYLV 438
           +     ++ +EIG+ + +SRE +RQ   +   KLK     ++L+ YLV
Sbjct: 524 MEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of CmaCh14G009860 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 4.0e-46
Identity = 109/337 (32.34%), Postives = 187/337 (55.49%), Query Frame = 0


Query: 90  RCKNLEKMEQSCGGDGNVAWKKRRRKRRKEVGETAEENWVALSSGPLRPGHLSSKEEAEL 149
           R KN    + +   D     +K   K++ + G   ++       GP     L++KEEAEL
Sbjct: 197 RAKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAEL 256

Query: 150 CLCLKEAAQIEKTKTRIMETQDHEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYS 209
              ++   ++EK KT++      EPT  + A AMG     +   + R R SR++LI    
Sbjct: 257 ISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANL 316

Query: 210 KLVISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALD 269
           +LV+ IA  YQ +G++ QDL QEG++GL+K  E+F+P  G + +TYAYWWIRQ+I +++ 
Sbjct: 317 RLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIF 376

Query: 270 KKSRLVRLPGHMGQMVARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRP 329
           + SR +RLP ++  ++ +++EA      + +  P+ +E+A ++ V    +  +   ++ P
Sbjct: 377 QNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTP 436

Query: 330 ISINRPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKRLLSTLSKREAHILTLYFG 389
           +S+ +P+      T QEI P     TP   V ++LM+  ++ LL+ LS +E  I+ L FG
Sbjct: 437 LSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFG 496

Query: 390 LNGQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKS 427
           ++G   +S  EIG+   LS+E +RQ     L +LK++
Sbjct: 497 IDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQN 533

[Close]

BLAST of CmaCh14G009860 vs. ExPASy TrEMBL
Match: A0A6J1J3P0 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481519 PE=3 SV=1)

HSP 1 Score: 859.8 bits (2220), Expect = 5.1e-246
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120
           PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120

Query: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180
           GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA
Sbjct: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360
           RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL
Sbjct: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 AKLKKSNILDYLKDYLV 438
           AKLKKSNILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]

BLAST of CmaCh14G009860 vs. ExPASy TrEMBL
Match: A0A6J1FAN3 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442316 PE=3 SV=1)

HSP 1 Score: 842.0 bits (2174), Expect = 1.1e-240
Identity = 426/437 (97.48%), Postives = 434/437 (99.31%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFI+NDTLTHP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120
           PPSEAAAVLAVEAAREHVLVEAGWLSKDW CKNLEKMEQSCGG GNVAWKKRRRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQSCGGAGNVAWKKRRRKRRKEV 120

Query: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180
           GETAEENWVALS+GPLRPGHLSSKEEAELCLCLKEAAQIEK KTRIMETQ+HEPTNKQLA
Sbjct: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKIKTRIMETQEHEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVA+IAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVAKIAEANNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360
           RVPTHKEVAKYLKVPVSTVRLVTER+KRPISIN+PVNDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERNKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           IRKLMKQELK+LL+TLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL
Sbjct: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 AKLKKSNILDYLKDYLV 438
           AKLKKSNILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]

BLAST of CmaCh14G009860 vs. ExPASy TrEMBL
Match: A0A0A0L9T0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G687740 PE=3 SV=1)

HSP 1 Score: 737.6 bits (1903), Expect = 2.9e-209
Identity = 379/437 (86.73%), Postives = 403/437 (92.22%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL PN ISNDTLT P
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120
           PP E AAVLAVEAA EHVLVEA   S+DW  KN+EKME+SC GDG VAWKK+RRKRRKEV
Sbjct: 61  PPPE-AAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRRKRRKEV 120

Query: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180
           G  AEENW+ALSSGPLRPG+LS KEEAELCLCLKEA  +E  KTRIMETQ+HEPTNKQLA
Sbjct: 121 GVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTK G IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQ II+ALDKKSRLVRLPGHMGQMVARIAE NNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360
           R PT+KEVA+ LKV +ST+RLV ERSKRPISIN+PVNDR CLTLQEIMPGPDNLTPENMV
Sbjct: 301 RPPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           +RKLMKQELKRLL+TLSKREA IL+LYFGLNG+IPQSFEEIGKSLNLSRETIRQTNIATL
Sbjct: 361 MRKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 AKLKKSNILDYLKDYLV 438
           +KLKK+++LDYLKDYLV
Sbjct: 421 SKLKKTDVLDYLKDYLV 436

[Close]

BLAST of CmaCh14G009860 vs. ExPASy TrEMBL
Match: A0A5D3BP27 (RNA polymerase sigma factor sigD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00100 PE=3 SV=1)

HSP 1 Score: 731.1 bits (1886), Expect = 2.7e-207
Identity = 375/437 (85.81%), Postives = 404/437 (92.45%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHF   PFS+KL PNFIS DTLT P
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120
           PP E AAVLAVEAA EHVLVEA   S+DW  KN+E+ME+SC GDG VAWKK+RRKRRKEV
Sbjct: 61  PPPE-AAVLAVEAAGEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEV 120

Query: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180
           G  AEENW+ALSSGPLRPG+LS KEEAELCLCLKEA  +EK K+RIMETQ+HEPTNKQLA
Sbjct: 121 GVKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTK G IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKPGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEP+RGHKLSTYAYWWIRQ II+ALDKKSRLVRLPGHMGQMVARIAE NNHLGIKLS
Sbjct: 241 AERFEPSRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360
           R PT++EVA+ LKV VSTVRLV ERSKRPISIN+PVNDR CLTLQEI+PGPDNLTPENMV
Sbjct: 301 RPPTNEEVAESLKVRVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMV 360

Query: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           +RKLMKQELKRLL+TLSKREAHIL+LYFGLNG+IPQSFEEIGKSLNLSRETIR+ NIATL
Sbjct: 361 MRKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATL 420

Query: 421 AKLKKSNILDYLKDYLV 438
           +KLKK+N+LDY+KDYLV
Sbjct: 421 SKLKKTNVLDYIKDYLV 436

[Close]

BLAST of CmaCh14G009860 vs. ExPASy TrEMBL
Match: A0A1S3CFL7 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500331 PE=3 SV=1)

HSP 1 Score: 708.8 bits (1828), Expect = 1.4e-200
Identity = 362/424 (85.38%), Postives = 391/424 (92.22%), Query Frame = 0


Query: 14  SPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHPPPSEAAAVLAVEA 73
           SPTLPSISLSSLPSLKTHLPQQPHF   PFS+KL PNFIS DTLT PPP E AAVLAVEA
Sbjct: 51  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLPPPPE-AAVLAVEA 110

Query: 74  AREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEVGETAEENWVALSS 133
           A EHVLVEA   S+DW  KN+E+ME+SC GDG VAWKK+RRKRRKEVG  AEENW+ALSS
Sbjct: 111 AGEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSS 170

Query: 134 GPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLAIAMGTKLGYIDRV 193
           GPLRPG+LS KEEAELCLCLKEA  +EK K+RIMETQ+HEPTNKQLAIAMGTK G IDR+
Sbjct: 171 GPLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAIAMGTKPGCIDRI 230

Query: 194 LWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLS 253
           L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKGAERFEP+RGHKLS
Sbjct: 231 LCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPSRGHKLS 290

Query: 254 TYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLSRVPTHKEVAKYLK 313
           TYAYWWIRQ II+ALDKKSRLVRLPGHMGQMVARIAE NNHLGIKLSR PT++EVA+ LK
Sbjct: 291 TYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNEEVAESLK 350

Query: 314 VPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKRLL 373
           V VSTVRLV ERSKRPISIN+PVNDR CLTLQEI+PGPDNLTPENMV+RKLMKQELKRLL
Sbjct: 351 VRVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVMRKLMKQELKRLL 410

Query: 374 STLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLK 433
           +TLSKREAHIL+LYFGLNG+IPQSFEEIGKSLNLSRETIR+ NIATL+KLKK+N+LDY+K
Sbjct: 411 NTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIK 470

Query: 434 DYLV 438
           DYLV
Sbjct: 471 DYLV 473

[Close]

BLAST of CmaCh14G009860 vs. NCBI nr
Match: XP_022982740.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucurbita maxima])

HSP 1 Score: 859.8 bits (2220), Expect = 1.1e-245
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120
           PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120

Query: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180
           GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA
Sbjct: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360
           RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL
Sbjct: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 AKLKKSNILDYLKDYLV 438
           AKLKKSNILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]

BLAST of CmaCh14G009860 vs. NCBI nr
Match: XP_023528248.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 851.3 bits (2198), Expect = 3.7e-243
Identity = 431/437 (98.63%), Postives = 436/437 (99.77%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFI+NDTLTHP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120
           PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120

Query: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180
           GETAEENWVALS+GPLRPGHLSSKEEAELCLCLKEAAQIEK KTRIMETQDHEPTNKQLA
Sbjct: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKIKTRIMETQDHEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360
           RVPTHKEVAKYLKVPVSTVRLVTERSKRPISIN+PVNDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           IRKLMKQELK+LL+TLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL
Sbjct: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 AKLKKSNILDYLKDYLV 438
           AKLKKSNILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]

BLAST of CmaCh14G009860 vs. NCBI nr
Match: KAG6581564.1 (RNA polymerase sigma factor sigD, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 844.0 bits (2179), Expect = 6.0e-241
Identity = 428/437 (97.94%), Postives = 434/437 (99.31%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFI+NDTLTHP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120
           PPSEAAAVLAVEAAREHVLVEAGWLSKDW CKNLEKMEQ CGG GNVAWKKRRRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQCCGGAGNVAWKKRRRKRRKEV 120

Query: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180
           GETAEENWVALS+GPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQD+EPTNKQLA
Sbjct: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDYEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360
           RVPTHKEVAKYLKVPVSTVRLVTERSKRPISIN+PVNDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           IRKLMKQELK+LL+TLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL
Sbjct: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 AKLKKSNILDYLKDYLV 438
           AKLKKSNILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]

BLAST of CmaCh14G009860 vs. NCBI nr
Match: XP_022935445.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucurbita moschata] >KAG7018070.1 RNA polymerase sigma factor sigD, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 842.0 bits (2174), Expect = 2.3e-240
Identity = 426/437 (97.48%), Postives = 434/437 (99.31%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60
           MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFI+NDTLTHP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFINNDTLTHP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120
           PPSEAAAVLAVEAAREHVLVEAGWLSKDW CKNLEKMEQSCGG GNVAWKKRRRKRRKEV
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWSCKNLEKMEQSCGGAGNVAWKKRRRKRRKEV 120

Query: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180
           GETAEENWVALS+GPLRPGHLSSKEEAELCLCLKEAAQIEK KTRIMETQ+HEPTNKQLA
Sbjct: 121 GETAEENWVALSNGPLRPGHLSSKEEAELCLCLKEAAQIEKIKTRIMETQEHEPTNKQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVA+IAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVAKIAEANNHLGIKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360
           RVPTHKEVAKYLKVPVSTVRLVTER+KRPISIN+PVNDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERNKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           IRKLMKQELK+LL+TLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL
Sbjct: 361 IRKLMKQELKKLLNTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 AKLKKSNILDYLKDYLV 438
           AKLKKSNILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]

BLAST of CmaCh14G009860 vs. NCBI nr
Match: XP_038906215.1 (RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida])

HSP 1 Score: 747.7 bits (1929), Expect = 5.8e-212
Identity = 380/437 (86.96%), Postives = 408/437 (93.36%), Query Frame = 0


Query: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60
           MATTSSLCSLP QSPTLPSISLSSLPSLKTHLPQQPHF   PFSTKL  NFI+NDTLT P
Sbjct: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGTNFINNDTLTLP 60

Query: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120
           PP E AAVL VEAAREHVLV+A   S+DW CKNLE+ME SCGGDG VAWKK+RRKRRKEV
Sbjct: 61  PPPE-AAVLTVEAAREHVLVDARGFSEDWSCKNLERMEGSCGGDGTVAWKKKRRKRRKEV 120

Query: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180
           G  AEENW ALSSGPLRPG+LS KEEAELCLCLKEAAQ+E+ KTRIMETQ+HEPTN+QLA
Sbjct: 121 GLKAEENWAALSSGPLRPGYLSPKEEAELCLCLKEAAQLEEAKTRIMETQEHEPTNRQLA 180

Query: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240
           IA+GTKLG IDR+L RARESRDRLIRCYSKLVISIAAPYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQ II+ALDKKSRLVRLPGHMGQMVARIAEANNHLG+KLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEANNHLGLKLS 300

Query: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360
           R PTHKEVA+ LKV VSTVRLVTERSKRPISIN+PVNDRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RPPTHKEVAESLKVRVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420
           +RKLMKQE+KRLL+TLSKREAHIL+LYFGLNG+IP+SFEEIGKSLNLSRETIRQ N+ATL
Sbjct: 361 MRKLMKQEVKRLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRQINVATL 420

Query: 421 AKLKKSNILDYLKDYLV 438
           +KLK ++ILDYLK+YLV
Sbjct: 421 SKLKNTDILDYLKEYLV 436

[Close]

BLAST of CmaCh14G009860 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 305.4 bits (781), Expect = 7.1e-83
Identity = 190/452 (42.04%), Postives = 272/452 (60.18%), Query Frame = 0


Query: 1   MATT--SSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTI-SPFSTKLAPNFISNDTL 60
           MATT  ++  +    SP +P+IS    P L+T    QP  ++ SPFS KL+   +  DT 
Sbjct: 1   MATTIPTTATATMCPSPPVPTIS----PLLRTTHQCQPSPSLSSPFSIKLSTALVCGDTT 60

Query: 61  THPPPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRR 120
                               V+++     + W               G  + K+R+R+RR
Sbjct: 61  VD------------RVVDSSVMIK----PEKW---------------GIQSEKRRKRRRR 120

Query: 121 KEVG----ETAEENWVALSS----------GPLRPGHLSSKEEAELCLCLKEAAQIEKTK 180
           + VG    E  EE    + +          G  R G LS  EE +LCL LKE A++E   
Sbjct: 121 RRVGYERLEPEEEENAGVEAEAETISVPVVGASRSGFLSRLEEVQLCLYLKEGAKLENLG 180

Query: 181 TRIMETQDHEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKG 240
           T +   +++E  +  LA   G K    + +L R +E+R+++ RCY +LV+SIA  YQGKG
Sbjct: 181 TSV---EENEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKG 240

Query: 241 ISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQ 300
           ++LQDL QEG+IGLL+GAERF+P+RG+KLSTY YWWI+Q I++A+  KSRLV+LPG M +
Sbjct: 241 LNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWE 300

Query: 301 MVARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLT 360
           + A++AEA+N L  KL R P+ +E+A++L + VS VRL  ERS+ P+S++R  +  G +T
Sbjct: 301 LTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMT 360

Query: 361 LQEIMPGPDNLTPENMVIRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGK 420
           LQEI+ GPD   PE MV R+ MK E+++LL +L+ RE+ +L LYFGLNG+ P SFEEIGK
Sbjct: 361 LQEIVRGPDETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGK 414

Query: 421 SLNLSRETIRQTNIATLAKLKKSNILDYLKDY 436
           SL LSRE +RQ N   L KL+  + ++ LK Y
Sbjct: 421 SLKLSRERVRQINGIALKKLRNVHNVNDLKIY 414

[Close]

BLAST of CmaCh14G009860 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 187.2 bits (474), Expect = 2.8e-47
Identity = 107/348 (30.75%), Postives = 194/348 (55.75%), Query Frame = 0


Query: 90  RCKNLEKMEQSCGGDGNVAWKKRRRKRRKEVGETAEENWVALSSGPLRPGHLSSKEEAEL 149
           R K LEK           +  K++R   +EV       ++ +++   +   L+ +EE EL
Sbjct: 224 RAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHEL 283

Query: 150 CLCLKEAAQIEKTKTRIMETQDHEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYS 209
              +++  ++E+ +T + E    +PT  Q A A G     + + +      +D++I+   
Sbjct: 284 SAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNI 343

Query: 210 KLVISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALD 269
           +LVISIA  YQG G++LQDL QEG  GL++GAE+F+  +G K STYA+WWI+Q + ++L 
Sbjct: 344 RLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLS 403

Query: 270 KKSRLVRLPGHMGQMVARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRP 329
            +SR++RLP HM +   R+ EA   L  +  + P ++E+A+   + +  +  V    K P
Sbjct: 404 DQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLSPKPP 463

Query: 330 ISINRPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKRLLSTLSKREAHILTLYFG 389
            S+++ +     L   E++  P+ +T E+++I++ M+Q+L ++L +L  RE  ++   FG
Sbjct: 464 RSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTREKQVIRWRFG 523

Query: 390 LNGQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLKDYLV 438
           +     ++ +EIG+ + +SRE +RQ   +   KLK     ++L+ YLV
Sbjct: 524 MEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of CmaCh14G009860 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 187.2 bits (474), Expect = 2.8e-47
Identity = 109/337 (32.34%), Postives = 187/337 (55.49%), Query Frame = 0


Query: 90  RCKNLEKMEQSCGGDGNVAWKKRRRKRRKEVGETAEENWVALSSGPLRPGHLSSKEEAEL 149
           R KN    + +   D     +K   K++ + G   ++       GP     L++KEEAEL
Sbjct: 197 RAKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQLFLWGPETKQLLTAKEEAEL 256

Query: 150 CLCLKEAAQIEKTKTRIMETQDHEPTNKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYS 209
              ++   ++EK KT++      EPT  + A AMG     +   + R R SR++LI    
Sbjct: 257 ISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANL 316

Query: 210 KLVISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALD 269
           +LV+ IA  YQ +G++ QDL QEG++GL+K  E+F+P  G + +TYAYWWIRQ+I +++ 
Sbjct: 317 RLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIF 376

Query: 270 KKSRLVRLPGHMGQMVARIAEANNHLGIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRP 329
           + SR +RLP ++  ++ +++EA      + +  P+ +E+A ++ V    +  +   ++ P
Sbjct: 377 QNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTP 436

Query: 330 ISINRPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKRLLSTLSKREAHILTLYFG 389
           +S+ +P+      T QEI P     TP   V ++LM+  ++ LL+ LS +E  I+ L FG
Sbjct: 437 LSMQQPIWSDQDTTFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFG 496

Query: 390 LNGQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKS 427
           ++G   +S  EIG+   LS+E +RQ     L +LK++
Sbjct: 497 IDGGKQRSLSEIGEIYGLSKERVRQLESRALYRLKQN 533

[Close]

BLAST of CmaCh14G009860 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 142.9 bits (359), Expect = 6.1e-34
Identity = 110/380 (28.95%), Postives = 180/380 (47.37%), Query Frame = 0


Query: 78  VLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKK-------------RRRKRRKEVGETA 137
           +L++   L K W     + +     G G +  KK             RR   +K+   T 
Sbjct: 115 LLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTH 174

Query: 138 EENWVALSSGPLRPGH---------LSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPT 197
            +    +SSG    G+         LS  E   L   +K   +++  K+R+ +    EP+
Sbjct: 175 VKAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPS 234

Query: 198 NKQLAIAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNI 257
           ++QLA+++      +   L     +R++L     +LV+SIA  Y   G  + DL Q G I
Sbjct: 235 DEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLI 294

Query: 258 GLLKGAERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHL 317
           GLL+G E+F+ ++G ++STY YWWIRQ + +AL   SR +RLP H+ + +  I  A   L
Sbjct: 295 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL 354

Query: 318 GIKLSRVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLT 377
             K    P+   +A+ L +    VR  TE   +  S+     DR        +PG  + +
Sbjct: 355 QEK-GITPSIDRIAESLNMSQKKVRNATEAVSKVFSL-----DRDAFPSLNGLPGETHHS 414

Query: 378 ----------PENMVIRKLMKQELKRLLS-TLSKREAHILTLYFGLNGQIPQSFEEIGKS 425
                     P +      +K+E+ +L+S TL +RE  I+ LY+GL+ +   ++E+I K 
Sbjct: 415 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKR 474

[Close]

BLAST of CmaCh14G009860 vs. TAIR 10
Match: AT3G53920.1 (RNApolymerase sigma-subunit C )

HSP 1 Score: 141.0 bits (354), Expect = 2.3e-33
Identity = 94/298 (31.54%), Postives = 153/298 (51.34%), Query Frame = 0


Query: 143 SKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLAIAMGTKLGYIDRVLWRARESRD 202
           S+ E E+   +K  A +E+ +T++ E      +    A A G     + R L      RD
Sbjct: 275 SRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLHYGWYCRD 334

Query: 203 RLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQ 262
            L++    LV+ +A  Y+G GI+ +DL Q G +G+L+GAERF+  RG+K STY  +WIR+
Sbjct: 335 ELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTYVQYWIRK 394

Query: 263 TIIQALDKKSRLVRLPGHMGQMVARIAEANNHL----GIKLSRVPTHKEVAKYLKVPVST 322
           ++   + + +R V +P  + + +  I +A   L    GIK +     +E+AK     V  
Sbjct: 395 SMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYA---ADEEIAKLTGHSVKK 454

Query: 323 VRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMVIRKLMKQELKRLLSTLSK 382
           +R   +  K   SI++ V D       E  P     +PE  V+R+  ++++  LL  L  
Sbjct: 455 IRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLEGLEP 514

Query: 383 REAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATLAKLKKSNILDYLKDYL 437
           RE  ++ L +GL    P+S EEIGK L +S+E IR+     +AKL+     + L+ YL
Sbjct: 515 REKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRYYL 569

The following BLAST results are available for this feature:

BLAST of CmaCh14G009860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZSL6	1.0e-81	42.04	RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
P38023	4.1e-51	33.82	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
P26683	1.1e-48	33.33	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
O22056	4.0e-46	30.75	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
Q9LD95	4.0e-46	32.34	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmaCh14G009860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J3P0	5.1e-246	100.00	RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FAN3	1.1e-240	97.48	RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0L9T0	2.9e-209	86.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G687740 PE=3 SV=1	[more]
A0A5D3BP27	2.7e-207	85.81	RNA polymerase sigma factor sigD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CFL7	1.4e-200	85.38	RNA polymerase sigma factor sigD, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CmaCh14G009860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022982740.1	1.1e-245	100.00	RNA polymerase sigma factor sigD, chloroplastic [Cucurbita maxima]	[more]
XP_023528248.1	3.7e-243	98.63	RNA polymerase sigma factor sigD, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG6581564.1	6.0e-241	97.94	RNA polymerase sigma factor sigD, chloroplastic, partial [Cucurbita argyrosperma...	[more]
XP_022935445.1	2.3e-240	97.48	RNA polymerase sigma factor sigD, chloroplastic [Cucurbita moschata] >KAG7018070...	[more]
XP_038906215.1	5.8e-212	86.96	RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida]	[more]

BLAST of CmaCh14G009860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13730.1	7.1e-83	42.04	sigma factor 4	[more]
AT1G08540.1	2.8e-47	30.75	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	2.8e-47	32.34	RNApolymerase sigma-subunit F	[more]
AT1G64860.1	6.1e-34	28.95	sigma factor A	[more]
AT3G53920.1	2.3e-33	31.54	RNApolymerase sigma-subunit C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 228..241 score: 58.71 coord: 252..260 score: 74.91 coord: 376..388 score: 37.67 coord: 397..412 score: 39.64 coord: 412..423 score: 40.75
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 93..276 e-value: 7.4E-34 score: 119.8
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 4..436
None	No IPR available	PANTHER	PTHR30603:SF47	RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC	coord: 4..436
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 366..424 e-value: 2.25332E-8 score: 48.2546
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 204..273 e-value: 8.5E-20 score: 70.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 277..352 e-value: 4.9E-9 score: 38.5
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 359..437 e-value: 1.7E-19 score: 71.2
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 200..425 e-value: 1.4E-30 score: 104.0
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 372..425 e-value: 8.3E-11 score: 41.2
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 287..359 e-value: 1.7E-10 score: 40.9
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 277..348
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 335..426
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 139..273

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G009860.1	CmaCh14G009860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity