CmaCh14G009420 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G009420
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	flowering time control protein FCA-like isoform X6
Location	Cma_Chr14: 4882658 .. 4885782 (-)
RNA-Seq Expression	CmaCh14G009420
Synteny	CmaCh14G009420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAGGGGTTTGGAAACGGCGGTTTGAGGCCGAATTGTGGGAATCAGAATGCAAATTTGGGGCGTAAAAGGCCTAGAATCCATTCCGACAGAACGGTTCCTGCAGGTATAATTGTTTGATGAAACATGAAACGTAGAAAATAGCTTCTTTATATTTTACACTAATATAGAACGTGGAATGTATCTTGCACTTCTAATCCTAATTGAGCTAATTACCTGTCGTAGCTGAGCTTAAAATTCCCAGCTCAACGATGAACTGAACTTAAAGATTTCTCTTATAGATTGTAGAAATTGTAGCTCACATTGTTTTCCTTATTGGACTTTTTTCAATTTAGAAGTTTTTCTTTGGCACTCTTAATTCATCAAAAGCTACTTTCAGCCAATTATCTTTCTTCAAGTATTCCAAGACTTTTAAGTTATAAGTCAAGATCTACTCTTAAGAACATCATAAGACTCTTTCTACTGTCTAACATTTAACATGAGACACAGGGAAACTTTTTAGTTCATCAACTATCTGATATTGCCTTTCTTTGGAGCAATTTGTTTAGAATGAATGTCATTGAGATATATATATTTCAGATCATGCTGAGGCTAGTGGCCTCGTGAGATTGTATGTTGCACAAGTTCCCCGAACAGGAACCGAAGAAGCTGTAAGTTTTAATTTCCACAGTTTGCCAATTCATATAACTTTGTAGGCAAGTAGTTCTTTGGGAAGGAAGATTGATGATCTTATCTCTTGTCATTGATCATAACTGAAAAATATTAAAAAATTTGTTTCAGATTCGTCCTTTGTTTGAAGTCCATGGAGATATTGTCAAGATTGTAATATTAAGGGATAAGACAACTGGTCAACAGAAAGGTCTTTTGTTTGTTTTAAATTTAATTCCATTTAATCCTTCTGCCGTTTAACGGGTTGATTAGAGTATCTATATGCTCACTTCTGATCTTCATACTTAGGGGTACAATTATGTGGAATTGTCATGTTTTGGTTTGTTTACAATACTTTTGCACGGAGTGTTAGCGAAAACTGAGTCTGGTGACGACCTTGCCTTTTGGAAATGAGGAAGCAGGACACTCTGAATAACACAATATATCCTGACAAGTACTTCGAGTTGATTCCAAAGTGAAGCTTCCCCTTGTCAATGCAAACTCTAATTTATTGGATCACTATCATCTTATTCCTTCTTGATTTCTCAGAAACACTTATTAATTCCTGTTTATTTATTTATTTATGTTTAAGTTGACTTTATCACGCATCTTGGATATCATCTTTAATCGAAGTTCTATGTCTGAAATATCAGTTCTAAAAAACAGCTTCGGTATATATGAATAATCTTTTATTGTTAAGATCCAAATGGATTCTGGTTACTGCATCTGGCTTTATGCTGTCGTTCATAAAAATAATATTAAAGCAGATCTATGATTTCCTCTTCAGGTAGTTGCTTTGTGAAATACGCTACCTCGGTTGAAGCAGACAGGGCAATCAGTGCTTTGGACAATCAGTATACTTTTCCTGGAGTGAGTTATTTTTTATAGCCGATTGACGAACATATTATATGAAACACTTTTGCTTTTATTTTGAAAGTATGTTTCCGATCAAAATAAATCAATAAATGACTAATGAGTCACTATTGCTGTTTCTTATAATATGTAGGTAACTCAATTGATGTCATAATAACTTTTCTTATTATTCTTTTTATAACAGGAACTGACACCTATGAATGTGAAATATGCTGATAGTGAAAGAGACCGCCTTGGTAAGTTTCTGGCATTTCTGACTTCCCGTTGCATCACTTCGACGTATTTCTTCTTTATCTGTGCTGTATTATTTGCATCTTAGCAAGGCTATTCACTTTGCAAAGCGAGCATTGTTGTCTACTTGGTTCTTGCATTCTATGTTTTGAGCATTGCACGACCAAGGTGCACATGATTCTGATTGTTTCCCATAAGAGGCAACCCCTTAATCAATTACCTCATCACTTGGCTCTTTTCAATATTTTTTTTTTTTATGTTTTATGTAGGGAGCCCCTTAATAATTCAATTATCATCACCAACTCTCCTGAACTTTGTATGCTTCCCCTCCCCTGAGTCCGCTACCTCTCAACTTGAATGTTCATTTCTTTAAGGGTGGTGAACCAGAATGAGTAGTTCTATCAATGTCTTGATGCTATGCTCTAGCCTGCTGCCGATGATATCATCTGTTTCCCCGTATGAAAGTGACAAACCCTCTAGATGGATATCTCTTGCACTGCTGCGACATGAGCTAACAATAATTAGTTTGTTAAATCATGGCGTTAGGCGTTTGTGTTTCATAAATGTGTCAAAAAAACATTTTGACCATACATACGTTTGCATGATATGCAGATATAATATAGGTTATTTGGCGTGATAACTATTGTTTTATGTTTTTTGGTCTTGTTGGCTGTGTCAATTTTCAATCGTTAAACATCTCTCTCTCTCAACAGAGGCAACAACATTTCAGGCAGTCCGAGATTCAGTCATCCTCCACTGTTTAGGTATATTGTGTACTCGGTTCCTTTTGTCTAATTTGATAACATAAATTGTTTTCTTATTGGTGTAACCTTTTGTGGACCTGAGTCTTCTCTTGGTCCTCCTGCTGGAGGATGTTTTCCTAATAATTCATATCCTGGACAACAAAATTCTACAATTTTAGGACTACCAAGGAATGCTTCACAAGCGACATCCCATGCCCCTTTGGCTCCTAATGCCATACAGAAACCACAACCCCCCCAAATACAAGAACCTCATCATCTTTTGCTCAAATTTCATCTCAACCAATGCAAGAAACACAGAAAGTTTGTCAGCCTCCAATGCAGACTGATTTTTCTAAGATGCAGAATCAGGAGCGTTGTCAACAGCCCTGGTAAGATTCATATCTGCAGCAGAATTTACAGGTTCATGAGAATACGGTATGAAGGTGATCTGAAATATAAAATCCTTGTAGGAGCTGTAAAAATAAATTGAAGGTAAAGATTATGCCATGATTGACATCCTAAAAGGCTGAAAACCTGACTGCGGAAAATTACTGAAGTGGTCATTAATGTCATATTGTCATGGTAACTTGTGTGTGTTCTCATTTATGTCTTTGTGCAGCCTCCTAG

mRNA sequence

ATGAGTGAGGGGTTTGGAAACGGCGGTTTGAGGCCGAATTGTGGGAATCAGAATGCAAATTTGGGGCGTAAAAGGCCTAGAATCCATTCCGACAGAACGGTTCCTGCAGATCATGCTGAGGCTAGTGGCCTCGTGAGATTGTATGTTGCACAAGTTCCCCGAACAGGAACCGAAGAAGCTATTCGTCCTTTGTTTGAAGTCCATGGAGATATTGTCAAGATTGTAATATTAAGGGATAAGACAACTGGTCAACAGAAAGGTAGTTGCTTTGTGAAATACGCTACCTCGGTTGAAGCAGACAGGGCAATCAGTGCTTTGGACAATCAGTATACTTTTCCTGGAGAACTGACACCTATGAATGTGAAATATGCTGATAGTGAAAGAGACCGCCTTGAGGCAACAACATTTCAGGCAGTCCGAGATTCAGTCATCCTCCACTGTTTAGGACTACCAAGGAATGCTTCACAAGCGACATCCCATGCCCCTTTGGCTCCTAATGCCATACAGAAACCACAACCCCCCCAAATACAAGAACCTCATCATCTTTTGCTCAAATTTCATCTCAACCAATGCAAGAAACACAGAAAGTTTGTCAGCCTCCAATGCAGACTGATTTTTCTAAGATGCAGAATCAGGAGCGTTGTCAACAGCCCTGCCTCCTAG

Coding sequence (CDS)

ATGAGTGAGGGGTTTGGAAACGGCGGTTTGAGGCCGAATTGTGGGAATCAGAATGCAAATTTGGGGCGTAAAAGGCCTAGAATCCATTCCGACAGAACGGTTCCTGCAGATCATGCTGAGGCTAGTGGCCTCGTGAGATTGTATGTTGCACAAGTTCCCCGAACAGGAACCGAAGAAGCTATTCGTCCTTTGTTTGAAGTCCATGGAGATATTGTCAAGATTGTAATATTAAGGGATAAGACAACTGGTCAACAGAAAGGTAGTTGCTTTGTGAAATACGCTACCTCGGTTGAAGCAGACAGGGCAATCAGTGCTTTGGACAATCAGTATACTTTTCCTGGAGAACTGACACCTATGAATGTGAAATATGCTGATAGTGAAAGAGACCGCCTTGAGGCAACAACATTTCAGGCAGTCCGAGATTCAGTCATCCTCCACTGTTTAGGACTACCAAGGAATGCTTCACAAGCGACATCCCATGCCCCTTTGGCTCCTAATGCCATACAGAAACCACAACCCCCCCAAATACAAGAACCTCATCATCTTTTGCTCAAATTTCATCTCAACCAATGCAAGAAACACAGAAAGTTTGTCAGCCTCCAATGCAGACTGATTTTTCTAAGATGCAGAATCAGGAGCGTTGTCAACAGCCCTGCCTCCTAG

Protein sequence

MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEAIRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMNVKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPHHLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSPAS

Homology

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BLAST of CmaCh14G009420 vs. ExPASy Swiss-Prot
Match: B8BCZ8 (Flowering time control protein FCA OS=Oryza sativa subsp. indica OX=39946 GN=FCA PE=3 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 7.6e-30
Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 2   SEGFGNGGLRPNCGNQNANLGR-KRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 61
           S+  G GG R   G +    G   R R  S R   +DH   +  V+L++  VPRT TE+ 
Sbjct: 78  SDHSGGGGYRSGGGGEYGEPGSGPRHRYGSGRGDHSDHDNRNNYVKLFIGSVPRTATEDD 137

Query: 62  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 121
           +RPLFE HGD+V++ +++D+ TG+Q+G CFVKYATS EA+RAI AL NQYT PG + P+ 
Sbjct: 138 VRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQ 197

Query: 122 VKYADSERDR 131
           V+YAD ER+R
Sbjct: 198 VRYADGERER 207

[Close]

BLAST of CmaCh14G009420 vs. ExPASy Swiss-Prot
Match: Q6K271 (Flowering time control protein FCA OS=Oryza sativa subsp. japonica OX=39947 GN=FCA PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 7.6e-30
Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = 0


Query: 2   SEGFGNGGLRPNCGNQNANLGR-KRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 61
           S+  G GG R   G +    G   R R  S R   +DH   +  V+L++  VPRT TE+ 
Sbjct: 78  SDHSGGGGYRSGGGGEYGEPGSGPRHRYGSGRGDHSDHDNRNNYVKLFIGSVPRTATEDD 137

Query: 62  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 121
           +RPLFE HGD+V++ +++D+ TG+Q+G CFVKYATS EA+RAI AL NQYT PG + P+ 
Sbjct: 138 VRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQ 197

Query: 122 VKYADSERDR 131
           V+YAD ER+R
Sbjct: 198 VRYADGERER 207

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BLAST of CmaCh14G009420 vs. ExPASy Swiss-Prot
Match: O04425 (Flowering time control protein FCA OS=Arabidopsis thaliana OX=3702 GN=FCA PE=1 SV=3)

HSP 1 Score: 122.1 bits (305), Expect = 7.9e-27
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 37  DHAEASGLVRLYVAQVPRTGTEEAIRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATS 96
           D ++ S  V+L+V  VPRT TEE IRP FE HG+++++ +++DK TGQQ+G CFVKYATS
Sbjct: 112 DVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATS 171

Query: 97  VEADRAISALDNQYTFPGELTPMNVKYADSERDRLEATTFQ 138
            +ADRAI AL NQ T PG   P+ V+YAD ER+R+    F+
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK 212

[Close]

BLAST of CmaCh14G009420 vs. ExPASy Swiss-Prot
Match: Q8GZ26 (RNA-binding protein BRN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.0e-13
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 0


Query: 45  VRLYVAQVPRTGTEEAIRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAIS 104
           V+L+V QVP+  TE  +  LF     + ++ I+++KTT   +G CF+   T  +AD+ I+
Sbjct: 12  VKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVIN 71

Query: 105 ALDNQYTFPGELTPMNVKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQ 157
           +  N+ T PG  +P+ VKYAD E +RLE   F  +          LP+N S+
Sbjct: 72  SFHNKKTLPGASSPLQVKYADGELERLEHKLFVGM----------LPKNVSE 113

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BLAST of CmaCh14G009420 vs. ExPASy Swiss-Prot
Match: Q6DGV1 (CUGBP Elav-like family member 4 OS=Danio rerio OX=7955 GN=celf4 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-12
Identity = 38/95 (40.00%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 33  TVPADHAEASGLVRLYVAQVPRTGTEEAIRPLFEVHGDIVKIVILRDKTTGQQKGSCFVK 92
           T+P    +A   ++L++ Q+PR   E+ +RPLFE  G I ++ +L+D+ TG  KG  F+ 
Sbjct: 38  TIPMKDHDA---IKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLT 97

Query: 93  YATSVEADRAISALDNQYTFPGELTPMNVKYADSE 128
           Y     A +A +AL  Q T PG   P+ VK ADSE
Sbjct: 98  YCARESALKAQTALHEQKTLPGMNRPIQVKPADSE 129

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BLAST of CmaCh14G009420 vs. ExPASy TrEMBL
Match: A0A6J1J7F0 (CUGBP Elav-like family member 4 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111482437 PE=4 SV=1)

HSP 1 Score: 444.5 bits (1142), Expect = 2.6e-121
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 60
           MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA
Sbjct: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 60

Query: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120
           IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN
Sbjct: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120

Query: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180
           VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH
Sbjct: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180

Query: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSPAS 221
           HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSPAS
Sbjct: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSPAS 220

[Close]

BLAST of CmaCh14G009420 vs. ExPASy TrEMBL
Match: A0A6J1J0U4 (sex-lethal homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482437 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 2.2e-120
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 60
           MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA
Sbjct: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 60

Query: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120
           IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN
Sbjct: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120

Query: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180
           VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH
Sbjct: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180

Query: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 219
           HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP
Sbjct: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 218

[Close]

BLAST of CmaCh14G009420 vs. ExPASy TrEMBL
Match: A0A6J1J988 (protein sex-lethal-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482437 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 2.2e-120
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 60
           MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA
Sbjct: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 60

Query: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120
           IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN
Sbjct: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120

Query: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180
           VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH
Sbjct: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180

Query: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 219
           HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP
Sbjct: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 218

[Close]

BLAST of CmaCh14G009420 vs. ExPASy TrEMBL
Match: A0A6J1J3W9 (protein sex-lethal-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111482437 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 5.6e-84
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120
           IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN
Sbjct: 20  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 79

Query: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180
           VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH
Sbjct: 80  VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 139

Query: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 219
           HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP
Sbjct: 140 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 177

[Close]

BLAST of CmaCh14G009420 vs. ExPASy TrEMBL
Match: A0A6J1J0V0 (uncharacterized protein LOC111482437 isoform X5 OS=Cucurbita maxima OX=3661 GN=LOC111482437 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 9.5e-84
Identity = 168/218 (77.06%), Postives = 168/218 (77.06%), Query Frame = 0


Query: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 60
           MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPA                        
Sbjct: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPA------------------------ 60

Query: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120
                                     GSCFVKYATSVEADRAISALDNQYTFPGELTPMN
Sbjct: 61  --------------------------GSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120

Query: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180
           VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH
Sbjct: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 168

Query: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 219
           HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP
Sbjct: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 168

[Close]

BLAST of CmaCh14G009420 vs. NCBI nr
Match: XP_022983980.1 (CUGBP Elav-like family member 4 isoform X3 [Cucurbita maxima])

HSP 1 Score: 444.5 bits (1142), Expect = 5.3e-121
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 60
           MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA
Sbjct: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 60

Query: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120
           IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN
Sbjct: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120

Query: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180
           VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH
Sbjct: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180

Query: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSPAS 221
           HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSPAS
Sbjct: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSPAS 220

[Close]

BLAST of CmaCh14G009420 vs. NCBI nr
Match: XP_022983978.1 (protein sex-lethal-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 441.4 bits (1134), Expect = 4.5e-120
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 60
           MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA
Sbjct: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 60

Query: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120
           IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN
Sbjct: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120

Query: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180
           VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH
Sbjct: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180

Query: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 219
           HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP
Sbjct: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 218

[Close]

BLAST of CmaCh14G009420 vs. NCBI nr
Match: XP_022983976.1 (sex-lethal homolog isoform X1 [Cucurbita maxima] >XP_022983977.1 sex-lethal homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 441.4 bits (1134), Expect = 4.5e-120
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 60
           MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA
Sbjct: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 60

Query: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120
           IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN
Sbjct: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120

Query: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180
           VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH
Sbjct: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180

Query: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 219
           HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP
Sbjct: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 218

[Close]

BLAST of CmaCh14G009420 vs. NCBI nr
Match: XP_022983981.1 (protein sex-lethal-like isoform X4 [Cucurbita maxima])

HSP 1 Score: 320.5 bits (820), Expect = 1.2e-83
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120
           IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN
Sbjct: 20  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 79

Query: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180
           VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH
Sbjct: 80  VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 139

Query: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 219
           HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP
Sbjct: 140 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 177

[Close]

BLAST of CmaCh14G009420 vs. NCBI nr
Match: XP_022983982.1 (uncharacterized protein LOC111482437 isoform X5 [Cucurbita maxima])

HSP 1 Score: 319.7 bits (818), Expect = 2.0e-83
Identity = 168/218 (77.06%), Postives = 168/218 (77.06%), Query Frame = 0


Query: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPADHAEASGLVRLYVAQVPRTGTEEA 60
           MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPA                        
Sbjct: 1   MSEGFGNGGLRPNCGNQNANLGRKRPRIHSDRTVPA------------------------ 60

Query: 61  IRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120
                                     GSCFVKYATSVEADRAISALDNQYTFPGELTPMN
Sbjct: 61  --------------------------GSCFVKYATSVEADRAISALDNQYTFPGELTPMN 120

Query: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 180
           VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH
Sbjct: 121 VKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQATSHAPLAPNAIQKPQPPQIQEPH 168

Query: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 219
           HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP
Sbjct: 181 HLLLKFHLNQCKKHRKFVSLQCRLIFLRCRIRSVVNSP 168

[Close]

BLAST of CmaCh14G009420 vs. TAIR 10
Match: AT4G16280.2 (RNA binding;abscisic acid binding )

HSP 1 Score: 122.1 bits (305), Expect = 5.6e-28
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 37  DHAEASGLVRLYVAQVPRTGTEEAIRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATS 96
           D ++ S  V+L+V  VPRT TEE IRP FE HG+++++ +++DK TGQQ+G CFVKYATS
Sbjct: 112 DVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATS 171

Query: 97  VEADRAISALDNQYTFPGELTPMNVKYADSERDRLEATTFQ 138
            +ADRAI AL NQ T PG   P+ V+YAD ER+R+    F+
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK 212

[Close]

BLAST of CmaCh14G009420 vs. TAIR 10
Match: AT4G16280.3 (RNA binding;abscisic acid binding )

HSP 1 Score: 122.1 bits (305), Expect = 5.6e-28
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 37  DHAEASGLVRLYVAQVPRTGTEEAIRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATS 96
           D ++ S  V+L+V  VPRT TEE IRP FE HG+++++ +++DK TGQQ+G CFVKYATS
Sbjct: 112 DVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATS 171

Query: 97  VEADRAISALDNQYTFPGELTPMNVKYADSERDRLEATTFQ 138
            +ADRAI AL NQ T PG   P+ V+YAD ER+R+    F+
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK 212

[Close]

BLAST of CmaCh14G009420 vs. TAIR 10
Match: AT4G16280.4 (RNA binding;abscisic acid binding )

HSP 1 Score: 122.1 bits (305), Expect = 5.6e-28
Identity = 55/101 (54.46%), Postives = 74/101 (73.27%), Query Frame = 0


Query: 37  DHAEASGLVRLYVAQVPRTGTEEAIRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATS 96
           D ++ S  V+L+V  VPRT TEE IRP FE HG+++++ +++DK TGQQ+G CFVKYATS
Sbjct: 37  DVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATS 96

Query: 97  VEADRAISALDNQYTFPGELTPMNVKYADSERDRLEATTFQ 138
            +ADRAI AL NQ T PG   P+ V+YAD ER+R+    F+
Sbjct: 97  KDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFK 137

[Close]

BLAST of CmaCh14G009420 vs. TAIR 10
Match: AT2G47310.1 (flowering time control protein-related / FCA gamma-related )

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-19
Identity = 41/95 (43.16%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 37  DHAEASGLVRLYVAQVPRTGTEEAIRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATS 96
           D+A+ S + +LYVA + +T TE  IR +FE +G++ +I++ +DK TG++   CF+KY   
Sbjct: 103 DNADGS-IAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKV 162

Query: 97  VEADRAISALDNQYTFPGELTPMNVKYADSERDRL 132
            E + AI+AL  Q+TFPGE+ P+ V++A++ER+R+
Sbjct: 163 EEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERI 196

[Close]

BLAST of CmaCh14G009420 vs. TAIR 10
Match: AT1G03457.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-14
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 0


Query: 45  VRLYVAQVPRTGTEEAIRPLFEVHGDIVKIVILRDKTTGQQKGSCFVKYATSVEADRAIS 104
           V+L+V QVP+  TE  +  LF     + ++ I+++KTT   +G CF+   T  +AD+ I+
Sbjct: 12  VKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVIN 71

Query: 105 ALDNQYTFPGELTPMNVKYADSERDRLEATTFQAVRDSVILHCLGLPRNASQ 157
           +  N+ T PG  +P+ VKYAD E +RLE   F  +          LP+N S+
Sbjct: 72  SFHNKKTLPGASSPLQVKYADGELERLEHKLFVGM----------LPKNVSE 113

The following BLAST results are available for this feature:

BLAST of CmaCh14G009420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8BCZ8	7.6e-30	49.23	Flowering time control protein FCA OS=Oryza sativa subsp. indica OX=39946 GN=FCA...	[more]
Q6K271	7.6e-30	49.23	Flowering time control protein FCA OS=Oryza sativa subsp. japonica OX=39947 GN=F...	[more]
O04425	7.9e-27	54.46	Flowering time control protein FCA OS=Arabidopsis thaliana OX=3702 GN=FCA PE=1 S...	[more]
Q8GZ26	5.0e-13	35.71	RNA-binding protein BRN2 OS=Arabidopsis thaliana OX=3702 GN=BRN2 PE=1 SV=1	[more]
Q6DGV1	1.1e-12	40.00	CUGBP Elav-like family member 4 OS=Danio rerio OX=7955 GN=celf4 PE=2 SV=1	[more]

BLAST of CmaCh14G009420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7F0	2.6e-121	100.00	CUGBP Elav-like family member 4 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1J0U4	2.2e-120	100.00	sex-lethal homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482437 PE=4 S...	[more]
A0A6J1J988	2.2e-120	100.00	protein sex-lethal-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482437 P...	[more]
A0A6J1J3W9	5.6e-84	100.00	protein sex-lethal-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111482437 P...	[more]
A0A6J1J0V0	9.5e-84	77.06	uncharacterized protein LOC111482437 isoform X5 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CmaCh14G009420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983980.1	5.3e-121	100.00	CUGBP Elav-like family member 4 isoform X3 [Cucurbita maxima]	[more]
XP_022983978.1	4.5e-120	100.00	protein sex-lethal-like isoform X2 [Cucurbita maxima]	[more]
XP_022983976.1	4.5e-120	100.00	sex-lethal homolog isoform X1 [Cucurbita maxima] >XP_022983977.1 sex-lethal homo...	[more]
XP_022983981.1	1.2e-83	100.00	protein sex-lethal-like isoform X4 [Cucurbita maxima]	[more]
XP_022983982.1	2.0e-83	77.06	uncharacterized protein LOC111482437 isoform X5 [Cucurbita maxima]	[more]

BLAST of CmaCh14G009420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16280.2	5.6e-28	54.46	RNA binding;abscisic acid binding	[more]
AT4G16280.3	5.6e-28	54.46	RNA binding;abscisic acid binding	[more]
AT4G16280.4	5.6e-28	54.46	RNA binding;abscisic acid binding	[more]
AT2G47310.1	1.3e-19	43.16	flowering time control protein-related / FCA gamma-related	[more]
AT1G03457.1	3.5e-14	35.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 46..122 e-value: 2.8E-16 score: 70.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 47..114 e-value: 1.4E-15 score: 56.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 45..126 score: 14.794592
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 36..134 e-value: 6.4E-22 score: 79.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR24012	RNA BINDING PROTEIN	coord: 22..155
None	No IPR available	PANTHER	PTHR24012:SF698	FLOWERING TIME CONTROL FCA-LIKE PROTEIN	coord: 22..155
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 25..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G009420.1	CmaCh14G009420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding