CmaCh14G009230 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G009230
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	neuronal acetylcholine receptor subunit alpha-2-like
Location	Cma_Chr14: 4803838 .. 4804212 (+)
RNA-Seq Expression	CmaCh14G009230
Synteny	CmaCh14G009230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTGCACTAAATGGGATGCTGCTCGCAGAGCAATGAAATTCCTACGCTACTGGAAAATTCACACCCACCGCCGCTGCCGTCGCTCCTTCCCGGTGGATTTCCGTCACGTGTGGCGGTTTATCAAGCGACTCATTCACCCAACCCCAACCCCTCTTCCCCCATATTCTGCAGAGCGTCAATTCTCCTTCAATGACAACCCCATTGTTCACCTGAAATTGAATCGCCGTTCGCCGCCGCCGTCGCCGTGTGATTATGAAGCGGAGGAGGAAGAGGAGGAAGAAGGGATTGATTCGAAGGCGGAGAAGTTTATTAAAATGTTTTACGAGGAAATGAGGTTGCAGAGTCAGGTGTCGTATTTGCCGTTGGATTAG

mRNA sequence

ATGTCCTGCACTAAATGGGATGCTGCTCGCAGAGCAATGAAATTCCTACGCTACTGGAAAATTCACACCCACCGCCGCTGCCGTCGCTCCTTCCCGGTGGATTTCCGTCACGTGTGGCGGTTTATCAAGCGACTCATTCACCCAACCCCAACCCCTCTTCCCCCATATTCTGCAGAGCGTCAATTCTCCTTCAATGACAACCCCATTGTTCACCTGAAATTGAATCGCCGTTCGCCGCCGCCGTCGCCGTGTGATTATGAAGCGGAGGAGGAAGAGGAGGAAGAAGGGATTGATTCGAAGGCGGAGAAGTTTATTAAAATGTTTTACGAGGAAATGAGGTTGCAGAGTCAGGTGTCGTATTTGCCGTTGGATTAG

Coding sequence (CDS)

ATGTCCTGCACTAAATGGGATGCTGCTCGCAGAGCAATGAAATTCCTACGCTACTGGAAAATTCACACCCACCGCCGCTGCCGTCGCTCCTTCCCGGTGGATTTCCGTCACGTGTGGCGGTTTATCAAGCGACTCATTCACCCAACCCCAACCCCTCTTCCCCCATATTCTGCAGAGCGTCAATTCTCCTTCAATGACAACCCCATTGTTCACCTGAAATTGAATCGCCGTTCGCCGCCGCCGTCGCCGTGTGATTATGAAGCGGAGGAGGAAGAGGAGGAAGAAGGGATTGATTCGAAGGCGGAGAAGTTTATTAAAATGTTTTACGAGGAAATGAGGTTGCAGAGTCAGGTGTCGTATTTGCCGTTGGATTAG

Protein sequence

MSCTKWDAARRAMKFLRYWKIHTHRRCRRSFPVDFRHVWRFIKRLIHPTPTPLPPYSAERQFSFNDNPIVHLKLNRRSPPPSPCDYEAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQVSYLPLD

Homology

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BLAST of CmaCh14G009230 vs. ExPASy TrEMBL
Match: A0A6J1F231 (uncharacterized protein LOC111441455 OS=Cucurbita moschata OX=3662 GN=LOC111441455 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.7e-61
Identity = 117/124 (94.35%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 1   MSCTKWDAARRAMKFLRYWKIHTHRRCRRSFPVDFRHVWRFIKRLIHPTPTPLPPYSAER 60
           MSCTKWDAARRAMKFLR+WKIHTHRR RRSFPVDFRHVWRFIKRLIHPTPTPL PYSAER
Sbjct: 1   MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAER 60

Query: 61  QFSFNDNPIVHLKLNRRSPPPSPCDYEAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQVSY 120
           QFSFNDNPIVHLKL+RR PP  PCDYEAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQVSY
Sbjct: 61  QFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQVSY 120

Query: 121 LPLD 125
           LPLD
Sbjct: 121 LPLD 124

[Close]

BLAST of CmaCh14G009230 vs. ExPASy TrEMBL
Match: A0A0A0KYA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G002580 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.2e-29
Identity = 82/155 (52.90%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 4   TKWDAARRAMK-FLRYWKIHTHRRCRRSFPVDFRHVWRFIKRLIHPTPTPLPPYSAERQF 63
           T++   R+A K  LR WK+H+H   RR+FPVDFR + RFIKR++HPTPTPLPP+ AERQF
Sbjct: 5   TRFFHVRKAWKIILRQWKLHSH---RRAFPVDFRPLRRFIKRILHPTPTPLPPHYAERQF 64

Query: 64  SFNDNPIVHLKL-NRRSPPPS----------------------PCDY----------EAE 123
           SFND PI HLK  +RR+P  S                       C++          E E
Sbjct: 65  SFNDTPIFHLKFHSRRAPSASAALFLIPRFSCINPKVEFERYEDCEWERRNYEEEEEEEE 124

Query: 124 EEEEEEGIDSKAEKFIKMFYEEMRLQSQVSYLPLD 125
           EEEEE+GID KAEKFIKMFYEEM++QSQVSYL  D
Sbjct: 125 EEEEEDGIDLKAEKFIKMFYEEMKMQSQVSYLRFD 156

[Close]

BLAST of CmaCh14G009230 vs. ExPASy TrEMBL
Match: A0A5D3E0E5 (Neuronal acetylcholine receptor subunit alpha-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001360 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.0e-22
Identity = 72/139 (51.80%), Postives = 81/139 (58.27%), Query Frame = 0


Query: 19  WKIHTHRRCRRSFPVDFRHVWRFIKRLIHPTPTPLPPYSAERQFSFNDNPIVHLKLNRRS 78
           WKI      RR+FPVDFR + RFIKR++H TPTPLP + AERQFSFND PI H    RR 
Sbjct: 14  WKI-----LRRTFPVDFRPLRRFIKRIVHTTPTPLPHHYAERQFSFNDTPIFH----RRP 73

Query: 79  PPPS-----------------------PCDYEAEEEEEEE----------GIDSKAEKFI 125
           P  S                        C++E EEEEEEE          GID KAEKFI
Sbjct: 74  PSASATTMFQIPRFSCINPKVEFERYDDCEWEEEEEEEEEEEEEEEEEEDGIDLKAEKFI 133

[Close]

BLAST of CmaCh14G009230 vs. ExPASy TrEMBL
Match: A0A1S3BZI3 (neuronal acetylcholine receptor subunit alpha-2-like OS=Cucumis melo OX=3656 GN=LOC103494743 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.0e-22
Identity = 72/139 (51.80%), Postives = 81/139 (58.27%), Query Frame = 0


Query: 19  WKIHTHRRCRRSFPVDFRHVWRFIKRLIHPTPTPLPPYSAERQFSFNDNPIVHLKLNRRS 78
           WKI      RR+FPVDFR + RFIKR++H TPTPLP + AERQFSFND PI H    RR 
Sbjct: 14  WKI-----LRRTFPVDFRPLRRFIKRIVHTTPTPLPHHYAERQFSFNDTPIFH----RRP 73

Query: 79  PPPS-----------------------PCDYEAEEEEEEE----------GIDSKAEKFI 125
           P  S                        C++E EEEEEEE          GID KAEKFI
Sbjct: 74  PSASATTMFQIPRFSCINPKVEFERYDDCEWEEEEEEEEEEEEEEEEEEDGIDLKAEKFI 133

[Close]

BLAST of CmaCh14G009230 vs. ExPASy TrEMBL
Match: A0A5D2IN63 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D11G126700v1 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-08
Identity = 56/165 (33.94%), Postives = 80/165 (48.48%), Query Frame = 0


Query: 8   AARRAMKFLRYWKIHTHRR--CRRSFPVDFRHVWRFIKRLIHPTPTPLPP-YSAERQFSF 67
           AA+RA + LR + + T +    RR   ++ R V +F+K L H +P+P    Y  ERQ SF
Sbjct: 11  AAQRAWRLLRLFLLWTRKSGVLRRRLMMELRLVPKFLKGLGHSSPSPPGQIYFKERQLSF 70

Query: 68  NDNPIVHLKLNRRS------PPPSP----------------------------CDYEAEE 122
           ++ PI H+K++R +      P  SP                            C+ + EE
Sbjct: 71  DETPIFHVKMHRPASMRFLLPCTSPQDVDFDYDFGIDGEDEVYGYDSGIKSDSCEKQGEE 130

[Close]

BLAST of CmaCh14G009230 vs. NCBI nr
Match: XP_022934217.1 (uncharacterized protein LOC111441455 [Cucurbita moschata])

HSP 1 Score: 243.8 bits (621), Expect = 7.7e-61
Identity = 117/124 (94.35%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 1   MSCTKWDAARRAMKFLRYWKIHTHRRCRRSFPVDFRHVWRFIKRLIHPTPTPLPPYSAER 60
           MSCTKWDAARRAMKFLR+WKIHTHRR RRSFPVDFRHVWRFIKRLIHPTPTPL PYSAER
Sbjct: 1   MSCTKWDAARRAMKFLRHWKIHTHRRYRRSFPVDFRHVWRFIKRLIHPTPTPLRPYSAER 60

Query: 61  QFSFNDNPIVHLKLNRRSPPPSPCDYEAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQVSY 120
           QFSFNDNPIVHLKL+RR PP  PCDYEAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQVSY
Sbjct: 61  QFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQVSY 120

Query: 121 LPLD 125
           LPLD
Sbjct: 121 LPLD 124

[Close]

BLAST of CmaCh14G009230 vs. NCBI nr
Match: KAG6581289.1 (hypothetical protein SDJN03_21291, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018012.1 hypothetical protein SDJN02_19878, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.9 bits (616), Expect = 2.9e-60
Identity = 116/124 (93.55%), Postives = 118/124 (95.16%), Query Frame = 0


Query: 1   MSCTKWDAARRAMKFLRYWKIHTHRRCRRSFPVDFRHVWRFIKRLIHPTPTPLPPYSAER 60
           MSCTKWDAARRAMKFLR+WKIHTHRR R SFPVDFRHVWRFIKRLIHPTPTPL PYSAER
Sbjct: 1   MSCTKWDAARRAMKFLRHWKIHTHRRYRHSFPVDFRHVWRFIKRLIHPTPTPLRPYSAER 60

Query: 61  QFSFNDNPIVHLKLNRRSPPPSPCDYEAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQVSY 120
           QFSFNDNPIVHLKL+RR PP  PCDYEAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQVSY
Sbjct: 61  QFSFNDNPIVHLKLHRRPPPSPPCDYEAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQVSY 120

Query: 121 LPLD 125
           LPLD
Sbjct: 121 LPLD 124

[Close]

BLAST of CmaCh14G009230 vs. NCBI nr
Match: XP_023526161.1 (uncharacterized protein LOC111789721 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.7 bits (613), Expect = 6.6e-60
Identity = 116/124 (93.55%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MSCTKWDAARRAMKFLRYWKIHTHRRCRRSFPVDFRHVWRFIKRLIHPTPTPLPPYSAER 60
           MSCTKWDAARRAMKFLR WKIHTHRRCRRSFPVDF HVWRFIKRLIHPTPTPL PYSAER
Sbjct: 1   MSCTKWDAARRAMKFLRRWKIHTHRRCRRSFPVDFCHVWRFIKRLIHPTPTPLRPYSAER 60

Query: 61  QFSFNDNPIVHLKLNRRSPPPSPCDYEAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQVSY 120
           QFSFNDNPIVHLKL+R  PP  PCDYEAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQVSY
Sbjct: 61  QFSFNDNPIVHLKLHRLPPPSPPCDYEAEEEEEEEGIDSKAEKFIKMFYEEMRLQSQVSY 120

Query: 121 LPLD 125
           LPLD
Sbjct: 121 LPLD 124

[Close]

BLAST of CmaCh14G009230 vs. NCBI nr
Match: XP_011652950.1 (uncharacterized protein LOC105435158 [Cucumis sativus] >KGN52841.1 hypothetical protein Csa_014810 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 4.6e-29
Identity = 82/155 (52.90%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 4   TKWDAARRAMK-FLRYWKIHTHRRCRRSFPVDFRHVWRFIKRLIHPTPTPLPPYSAERQF 63
           T++   R+A K  LR WK+H+H   RR+FPVDFR + RFIKR++HPTPTPLPP+ AERQF
Sbjct: 5   TRFFHVRKAWKIILRQWKLHSH---RRAFPVDFRPLRRFIKRILHPTPTPLPPHYAERQF 64

Query: 64  SFNDNPIVHLKL-NRRSPPPS----------------------PCDY----------EAE 123
           SFND PI HLK  +RR+P  S                       C++          E E
Sbjct: 65  SFNDTPIFHLKFHSRRAPSASAALFLIPRFSCINPKVEFERYEDCEWERRNYEEEEEEEE 124

Query: 124 EEEEEEGIDSKAEKFIKMFYEEMRLQSQVSYLPLD 125
           EEEEE+GID KAEKFIKMFYEEM++QSQVSYL  D
Sbjct: 125 EEEEEDGIDLKAEKFIKMFYEEMKMQSQVSYLRFD 156

[Close]

BLAST of CmaCh14G009230 vs. NCBI nr
Match: XP_038906165.1 (uncharacterized protein LOC120092045 [Benincasa hispida])

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-26
Identity = 86/173 (49.71%), Postives = 93/173 (53.76%), Query Frame = 0


Query: 1   MSCTKWDAARRAMKFLRYWKIHTHRRCRRSFPVDFRHVWRFIKRLIH----PTPTPLPPY 60
           MS TK  AARR  K LR  K HTH   RR FPVDFR + RFIKRL+H    PTP P+ P+
Sbjct: 1   MSNTKCCAARRVWKILRQRKFHTH---RRPFPVDFRPLRRFIKRLVHSISTPTPIPVHPH 60

Query: 61  SAERQFSFNDNPIVHLKLNRRSPPPS---------------------------------- 120
             ERQFSFND PI HLK +R  P  S                                  
Sbjct: 61  YVERQFSFNDTPIFHLKFHRCPPSASAALFHFPRFSCINPKVEFDYEFESRVVDDDDGGW 120

Query: 121 -------PCDYEAEEEEEEE----GIDSKAEKFIKMFYEEMRLQSQVSYLPLD 125
                   C YE EEEEEEE    GID KAEKFIKMFYEEM++QSQVSYL LD
Sbjct: 121 ERWRLGGTCGYEEEEEEEEEEEEDGIDLKAEKFIKMFYEEMKMQSQVSYLRLD 170

[Close]

BLAST of CmaCh14G009230 vs. TAIR 10
Match: AT4G02170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38700.1); Has 53 Blast hits to 53 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-06
Identity = 33/97 (34.02%), Postives = 47/97 (48.45%), Query Frame = 0


Query: 56  YSAERQFSFNDNPIVHLKLNRRSP-------------PPSPCDYEAEEE----------- 115
           Y  ERQ SF++ P+ ++K     P             PP   DY+ E +           
Sbjct: 64  YYGERQLSFDETPLFNVKKKMHCPTSSMRFLLLPCFAPPVDFDYDFEMDGQDYSDEVQSY 123

Query: 116 -------EEEEGIDSKAEKFIKMFYEEMRLQSQVSYL 122
                  EEE+G+D +AE+FI  FYE+++LQ QVSYL
Sbjct: 124 GYDESCSEEEKGVDVRAEEFIAKFYEQIKLQRQVSYL 160

[Close]

BLAST of CmaCh14G009230 vs. TAIR 10
Match: AT5G38700.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02170.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 9.9e-06
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 0


Query: 84  CDYEA---EEEEEEEGIDSKAEKFIKMFYEEMRLQSQVSYL 122
           CD  A   +EEEEE+G+D +AE+FI  FYE+M+LQ Q+SYL
Sbjct: 133 CDRSANDDQEEEEEKGVDVRAEEFIAKFYEQMKLQRQISYL 173

The following BLAST results are available for this feature:

BLAST of CmaCh14G009230 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G009230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F231	3.7e-61	94.35	uncharacterized protein LOC111441455 OS=Cucurbita moschata OX=3662 GN=LOC1114414...	[more]
A0A0A0KYA9	2.2e-29	52.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G002580 PE=4 SV=1	[more]
A0A5D3E0E5	2.0e-22	51.80	Neuronal acetylcholine receptor subunit alpha-2-like OS=Cucumis melo var. makuwa...	[more]
A0A1S3BZI3	2.0e-22	51.80	neuronal acetylcholine receptor subunit alpha-2-like OS=Cucumis melo OX=3656 GN=...	[more]
A0A5D2IN63	3.7e-08	33.94	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D11G126700v1 P...	[more]

BLAST of CmaCh14G009230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934217.1	7.7e-61	94.35	uncharacterized protein LOC111441455 [Cucurbita moschata]	[more]
KAG6581289.1	2.9e-60	93.55	hypothetical protein SDJN03_21291, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023526161.1	6.6e-60	93.55	uncharacterized protein LOC111789721 [Cucurbita pepo subsp. pepo]	[more]
XP_011652950.1	4.6e-29	52.90	uncharacterized protein LOC105435158 [Cucumis sativus] >KGN52841.1 hypothetical ...	[more]
XP_038906165.1	2.1e-26	49.71	uncharacterized protein LOC120092045 [Benincasa hispida]	[more]

BLAST of CmaCh14G009230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02170.1	1.2e-06	34.02	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G38700.1	9.9e-06	58.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 95..121 e-value: 1.4E-9 score: 37.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..98
None	No IPR available	PANTHER	PTHR33265:SF5	COTTON FIBER PROTEIN	coord: 7..77
None	No IPR available	PANTHER	PTHR33265	AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED	coord: 7..77
None	No IPR available	PANTHER	PTHR33265:SF5	COTTON FIBER PROTEIN	coord: 86..121
None	No IPR available	PANTHER	PTHR33265	AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED	coord: 86..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G009230.1	CmaCh14G009230.1	mRNA