CmaCh14G008940 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G008940
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Location	Cma_Chr14: 4624339 .. 4628156 (-)
RNA-Seq Expression	CmaCh14G008940
Synteny	CmaCh14G008940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATTGATTTGGGGCGATGTGAGATTCCCAACTCGCGAGCTGAAGTTTCCATGGCTTTGGGTATGGCTACTCTTCCTGTGTTCCACCAGCTGCTCACCCTCTCTAATCCCAAATCGGCAACCATTCTCAGGCAGCGCCTACCCACTTCCAATTCTCAGAGGGCTTTCCATGTCTCTATTCTTTGTTGCTCTTCTACTTCTCAATCCCCAGAAACTAACGTCGAATCTGCGGAGTCCTCTGTCAATCTCGGCCTCCAGCTCTTCTCTAAAGGACGGGTGTGCGTTTTTTTCCTTTCTATTCCATTCCCTTCTCTTACCACTTCCTTTATTCTCTACTTTCTCGCTTTCTGCCAATTGGGTATTCTTTAATTCCTTCACACTTGTTCCCTAATTTGGATTTTTTTAGTTTATTCTTCTGCCAATTGTTCTTGAATGGTCTCTTTTGGTACATAATTAGAGAGTTTTCTGTGAGGATTTTGTGAGAAACCACTGCAACTTCTTTTGGATTTTTGATGGACTTTGGTATAATATGTGTAATGGCTACCTTGACTTTCTATGCCAAAGAAGAACTCAGCCAAATTTCTGCAAAACTCTAGCTTCTTCTTCATTGGCTTTGGATATTCTGTAAGAAGTGTGTGTCTCTTTGTGTACATTTCACAAAACAATGAATGTTTCAGGTCAAAGAAGCTTTAGTCCAGTTTGAAGCAGCACTGGATATGAATCCCAACCCAATGGAGGCCCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGGTATGCTTAAAGGTCTCTATTTTTTTTACTTATTAACACAGCTTATTGCTCGTCACTGCATTAATCCAGGTTCATTGAAGAATATAATATAATGGACATAGTTTAGGGGGGTGTTGAATGCGTGTACTTTTATACTTTAAAAAGGTTTTGAAAAATTAGAAATCTGATTCAGCAAAGATGATGAATTGTGTCTCTGAATGTTTTGAGGTAGTGGGGAAGGAAAGAAAGCTGCTGACTGTCTGCGTGTTGCATTAAGAGAATATAACCTGAAATTTGGCACAATTTTGAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGAATTGCAAGAAGAGGTTCGTCGCTAAATGCTGCTCTCTTCCTTTTGCCATCTTCAACGTATTCACAATTGCTCGTTCAATTATATTTCTGAATAATATGGTTTCCAGGCTAGGATGGGTGGAGAAGATATAGGATATGGCTTTCGAAGAGATCTTAAACTCATTAGTGAAGTCCAAGCACCATTTCGAGGGGTTCGGAGGTTCTTTTATGTGGCACTATCTGCAGCTGCTGGAATTTCGCTGTTGTTTAATCTACCGAGGTTGTTTCGGGCTATTCAAGGTGGTAATGAAGCTCCTGATGTTTGGGAAACTGTTGGAAATTTAGCTGTTAATGTTGGAGGTACATTCAGTTCAGGAATATATTAATGAAAAGTTACATGTTCACTATGGTGAGGTAGCTGAAATACTAACTTTCCAATCAGCATTTAACAGGTATTGTCGTTTTTGTGGCGTTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAATGAAACGTTATCAAGGTTGCCTCTGCGTCTTTCCACCAATCGAGTTGTTGAACTTGTTCAGCTACGAGATACTGTAAGACCGGTGAGTATGATTATTCATCTTACCCCTTTATGATTCCATCAATGAATGGTAAGTCCAACATTCATGTTCAAGGGTTGATCACTCACTTCATTTGCCCATTTTGCCTTCATGTCCCTAACTCATTGGGTATCAGAGCCAGCTACCGGGTGGTGTGCTAGTGAGGATGGCAAGGCCTGAAGGGGGTGGACACGAAGCGGTGTGCCAGCAAGAACGCTGGGCCTCGAAGGGGGTGGATTGGAGGGTCCCACATCGATTGTGAAGGGAATGAGTGTTAGCGAGAACACTGGGCCCCGAAGGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGAGAACGAACATTCTTTATAAGGGTGTGAAAACCTCTCCCTAGTAAACGCGTTTTAAAAACCTTGAGGGGAAGCCCAAAAGGGAAAGCCCAAAAAGGACCATATCTGCTAGCGGTGAGCTTGAGCTGTTACAGTTGAAGTGTTCCATTTATAAAATCTTCCGGAATTCCTTTGCTAATATTCCTAGTTGGGCTCTATTGCTTCTAATATTCCTAGTTATGTACATTTTGCATCCCTTAAATCAATTTACCTTGCAAGGAAGGTCATTTTAGCTGGGAAAAAGGAGACAGTTTCTTCAGCCATCCAAAAGGCAGAGAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTTCTCTTAGTTCCTGTCATATGGCGCGAAGGTCGGGAGCCCCGAATGGAAAAGAAAGGGTTTGGTGCTCCAGCCCCTGCTGGTTCTGCTGCTCTGCCATCTATTGGGGTAAGTAAGATCAATCCATTTCTATCATGTCCTACATTTGTTTAAGGATATCCTTTATCCTTTTGAACTATGCCTGTTGTTTGTTCATGTTCGAACTAGAAAATTCGTAAGTAATCAATAGGTTCTCTTGTTATCATGGAACTATTGTAGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCCAAATCGAAGTTGAAAGCTGAAATTCGATTCAGGGCTGATGTTATATCACCTGCAGAATGGGAAAGGTAAGTGTATACCTGTCTACACATGCCTGCTTCCCGTCATCTAATTTACTTCTCAGCTTATTTGTAATAACCCAAGTCCACCGCTAGCAGATATTGTTCTCTTTGGGCTCCCCCTAAAGTTTTTAAAACGCGTCTGCTATGAAGAGGTTTCCACACCCTTGTAATGAATGCTTTGTTCTTCTCCCTAATCGATGTGGGATCTCACAATCTACACCCCTTCAAGGCCCTACATCCTCGCTGACATTCGTTCTCTTTTCCAATCAATGTGGGACCCCCCCAATCCGTCCCCTTCGGAGCCCAGTAAGGTTGCTGGCACACCACCTCGTGTCCACCCTCCTTCTGAACTCAGCCTCCTCGTTGGTACATCGCCCAGTGTTTGGCTCTGATACCATTTGCAACAGCCCAAGCCCACCGCTAGCAAATATTGACCTCTTTGGACTTTCCCTTTTGGGCTTCCCCTCGTGGTTTTTTAAACGCTTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCATTCTCCTCCCCAACCGATATGGAATCTCACAATATCTTTGCAAACACATCTTTTTTATCTTACAAAATTGTATTTTTTGTTTTTATTGGAAACATAAACCATTCATTGATGTATTGAAATGAAATACAAAAGATGCTCATTGGATAATATGAATTCATTGATCAGATACTCCAAAGTTGTATTATGACTTACTTTTGTTTGTTGAATTAGTTGGATAAGAGATCAGCAGAAATCTGAAGGGGTTACTCCTGGTGAGGATGTCTACATAATATTGCGATTGGATGGTCGAGTTCGAAGATCCGGGAGAGTATGTTCATATCATGAAAATCATCTTCTTCATTCTAATGGAAACACATCTTAGTATCGGAGATCTAAACCATGTTATCAGTCAACTATTTCATTTATAACTCCCAGAACTTCTTCATAGTGTCTCAGTTCCATGTCCTTGCAGACTTTTTCCTCACTTTTGGTAATGATCTGCAGGGAATGCCTGACTGGCAAAAAATTATTGAAGAGTTACCACCAATGGACGCTCTTCTAAGCAAGCTAGAAAGATGA

mRNA sequence

TATATTGATTTGGGGCGATGTGAGATTCCCAACTCGCGAGCTGAAGTTTCCATGGCTTTGGGTATGGCTACTCTTCCTGTGTTCCACCAGCTGCTCACCCTCTCTAATCCCAAATCGGCAACCATTCTCAGGCAGCGCCTACCCACTTCCAATTCTCAGAGGGCTTTCCATGTCTCTATTCTTTGTTGCTCTTCTACTTCTCAATCCCCAGAAACTAACGTCGAATCTGCGGAGTCCTCTGTCAATCTCGGCCTCCAGCTCTTCTCTAAAGGACGGGTCAAAGAAGCTTTAGTCCAGTTTGAAGCAGCACTGGATATGAATCCCAACCCAATGGAGGCCCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAGAAAGCTGCTGACTGTCTGCGTGTTGCATTAAGAGAATATAACCTGAAATTTGGCACAATTTTGAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGAATTGCAAGAAGAGGCTAGGATGGGTGGAGAAGATATAGGATATGGCTTTCGAAGAGATCTTAAACTCATTAGTGAAGTCCAAGCACCATTTCGAGGGGTTCGGAGGTTCTTTTATGTGGCACTATCTGCAGCTGCTGGAATTTCGCTGTTGTTTAATCTACCGAGGTTGTTTCGGGCTATTCAAGGTGGTAATGAAGCTCCTGATGTTTGGGAAACTGTTGGAAATTTAGCTGTTAATGTTGGAGGTATTGTCGTTTTTGTGGCGTTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAATGAAACGTTATCAAGGTTGCCTCTGCGTCTTTCCACCAATCGAGTTGTTGAACTTGTTCAGCTACGAGATACTGTAAGACCGGTCATTTTAGCTGGGAAAAAGGAGACAGTTTCTTCAGCCATCCAAAAGGCAGAGAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTTCTCTTAGTTCCTGTCATATGGCGCGAAGGTCGGGAGCCCCGAATGGAAAAGAAAGGGTTTGGTGCTCCAGCCCCTGCTGGTTCTGCTGCTCTGCCATCTATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCCAAATCGAAGTTGAAAGCTGAAATTCGATTCAGGGCTGATGTTATATCACCTGCAGAATGGGAAAGTTGGATAAGAGATCAGCAGAAATCTGAAGGGGTTACTCCTGGTGAGGATGTCTACATAATATTGCGATTGGATGGTCGAGTTCGAAGATCCGGGAGAGGAATGCCTGACTGGCAAAAAATTATTGAAGAGTTACCACCAATGGACGCTCTTCTAAGCAAGCTAGAAAGATGA

Coding sequence (CDS)

ATGGCTTTGGGTATGGCTACTCTTCCTGTGTTCCACCAGCTGCTCACCCTCTCTAATCCCAAATCGGCAACCATTCTCAGGCAGCGCCTACCCACTTCCAATTCTCAGAGGGCTTTCCATGTCTCTATTCTTTGTTGCTCTTCTACTTCTCAATCCCCAGAAACTAACGTCGAATCTGCGGAGTCCTCTGTCAATCTCGGCCTCCAGCTCTTCTCTAAAGGACGGGTCAAAGAAGCTTTAGTCCAGTTTGAAGCAGCACTGGATATGAATCCCAACCCAATGGAGGCCCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAGAAAGCTGCTGACTGTCTGCGTGTTGCATTAAGAGAATATAACCTGAAATTTGGCACAATTTTGAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGAATTGCAAGAAGAGGCTAGGATGGGTGGAGAAGATATAGGATATGGCTTTCGAAGAGATCTTAAACTCATTAGTGAAGTCCAAGCACCATTTCGAGGGGTTCGGAGGTTCTTTTATGTGGCACTATCTGCAGCTGCTGGAATTTCGCTGTTGTTTAATCTACCGAGGTTGTTTCGGGCTATTCAAGGTGGTAATGAAGCTCCTGATGTTTGGGAAACTGTTGGAAATTTAGCTGTTAATGTTGGAGGTATTGTCGTTTTTGTGGCGTTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAATGAAACGTTATCAAGGTTGCCTCTGCGTCTTTCCACCAATCGAGTTGTTGAACTTGTTCAGCTACGAGATACTGTAAGACCGGTCATTTTAGCTGGGAAAAAGGAGACAGTTTCTTCAGCCATCCAAAAGGCAGAGAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTTCTCTTAGTTCCTGTCATATGGCGCGAAGGTCGGGAGCCCCGAATGGAAAAGAAAGGGTTTGGTGCTCCAGCCCCTGCTGGTTCTGCTGCTCTGCCATCTATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCCAAATCGAAGTTGAAAGCTGAAATTCGATTCAGGGCTGATGTTATATCACCTGCAGAATGGGAAAGTTGGATAAGAGATCAGCAGAAATCTGAAGGGGTTACTCCTGGTGAGGATGTCTACATAATATTGCGATTGGATGGTCGAGTTCGAAGATCCGGGAGAGGAATGCCTGACTGGCAAAAAATTATTGAAGAGTTACCACCAATGGACGCTCTTCTAAGCAAGCTAGAAAGATGA

Protein sequence

MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESAESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSITAKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMDALLSKLER

Homology

[Close]

BLAST of CmaCh14G008940 vs. ExPASy Swiss-Prot
Match: Q9SRY4 (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA1 PE=1 SV=1)

HSP 1 Score: 596.3 bits (1536), Expect = 2.9e-169
Identity = 300/415 (72.29%), Postives = 351/415 (84.58%), Query Frame = 0


Query: 34  NSQRAFHVSILCCSSTSQSPETNVES---------AESSVNLGLQLFSKGRVKEALVQFE 93
           NS+R +   +   +S+S SP ++  S         AE  VN GL LF +GRVK+ALVQFE
Sbjct: 40  NSRRNWDSHLFVYASSSSSPSSSPPSPNSPTDDLTAELCVNTGLDLFKRGRVKDALVQFE 99

Query: 94  AALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFR 153
            AL + PNP+E+QAA YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFR
Sbjct: 100 TALSLAPNPIESQAAYYNKACCHAYRGEGKKAVDCLRIALRDYNLKFATILNDPDLASFR 159

Query: 154 ALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNL 213
           ALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR+FFY A +AAAGIS+ F +
Sbjct: 160 ALPEFKELQEEARLGGEDIGDNFRRDLKLISEVRAPFRGVRKFFYFAFAAAAGISMFFTV 219

Query: 214 PRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRL 273
           PRL +AI+GG+ AP++ ET GN A+N+GGIVV V+LFLW+NKKEEEQ+ QI+R+ETLSRL
Sbjct: 220 PRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWENKKEEEQMVQITRDETLSRL 279

Query: 274 PLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWREG 333
           PLRLSTNRVVELVQLRDTVRPVILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+W E 
Sbjct: 280 PLRLSTNRVVELVQLRDTVRPVILAGKKETVTLAMQKADRFRTELLRRGVLLVPVVWGER 339

Query: 334 REPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSITAKSKLKAEIRFRADVISPAEWESW 393
           + P +EKKGFGA + A + +LPSIGEDF+ RAQS+ A+SKLK EIRF+A+ +SP EWE W
Sbjct: 340 KTPEIEKKGFGASSKA-ATSLPSIGEDFDTRAQSVVAQSKLKGEIRFKAETVSPGEWERW 399

Query: 394 IRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMDALLSKLER 440
           IRDQQ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPPMD +LSKLER
Sbjct: 400 IRDQQISEGVNPGDDVYIILRLDGRVRRSGRGMPDWAEISKELPPMDDVLSKLER 453

[Close]

BLAST of CmaCh14G008940 vs. ExPASy TrEMBL
Match: A0A6J1J7F4 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482050 PE=4 SV=1)

HSP 1 Score: 857.4 bits (2214), Expect = 2.5e-245
Identity = 439/439 (100.00%), Postives = 439/439 (100.00%), Query Frame = 0


Query: 1   MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESA 60
           MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESA
Sbjct: 1   MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESA 60

Query: 61  ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL 120
           ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL
Sbjct: 61  ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL 120

Query: 121 RVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP 180
           RVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP
Sbjct: 121 RVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP 180

Query: 181 FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL 240
           FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL
Sbjct: 181 FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL 240

Query: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ 300
           FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ
Sbjct: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ 300

Query: 301 KAERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT 360
           KAERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT
Sbjct: 301 KAERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT 360

Query: 361 AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420
           AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW
Sbjct: 361 AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420

Query: 421 QKIIEELPPMDALLSKLER 440
           QKIIEELPPMDALLSKLER
Sbjct: 421 QKIIEELPPMDALLSKLER 439

[Close]

BLAST of CmaCh14G008940 vs. ExPASy TrEMBL
Match: A0A6J1F472 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442233 PE=4 SV=1)

HSP 1 Score: 850.5 bits (2196), Expect = 3.1e-243
Identity = 436/439 (99.32%), Postives = 437/439 (99.54%), Query Frame = 0


Query: 1   MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESA 60
           MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPE NVESA
Sbjct: 1   MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPEANVESA 60

Query: 61  ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL 120
           ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL
Sbjct: 61  ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL 120

Query: 121 RVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP 180
           RVALREY+LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP
Sbjct: 121 RVALREYDLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP 180

Query: 181 FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL 240
           FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL
Sbjct: 181 FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL 240

Query: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ 300
           FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ
Sbjct: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ 300

Query: 301 KAERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT 360
           KAERFRTELLRRGVLLVPVIWREGRE RMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT
Sbjct: 301 KAERFRTELLRRGVLLVPVIWREGRETRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT 360

Query: 361 AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420
           AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW
Sbjct: 361 AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420

Query: 421 QKIIEELPPMDALLSKLER 440
           QKIIEELPPMDALLSKLER
Sbjct: 421 QKIIEELPPMDALLSKLER 439

[Close]

BLAST of CmaCh14G008940 vs. ExPASy TrEMBL
Match: A0A5A7TR76 (Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00940 PE=4 SV=1)

HSP 1 Score: 784.3 bits (2024), Expect = 2.7e-223
Identity = 401/437 (91.76%), Postives = 419/437 (95.88%), Query Frame = 0


Query: 3   LGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESAES 62
           + MATLP+FH L TLSNPKS TILR RLPT  SQR FH+SIL CSSTSQSPE N++SAES
Sbjct: 1   MAMATLPLFHHLPTLSNPKSPTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAES 60

Query: 63  SVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCLRV 122
            VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAA YNKACCHAYRGEGKKAADCLRV
Sbjct: 61  CVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKACCHAYRGEGKKAADCLRV 120

Query: 123 ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR 182
           ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR
Sbjct: 121 ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR 180

Query: 183 GVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVALFL 242
           GVRRFFYVALSAAAGISLLFN+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFL
Sbjct: 181 GVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFL 240

Query: 243 WDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQKA 302
           WDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Sbjct: 241 WDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA 300

Query: 303 ERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSITAK 362
           ERFRTELLRRGVLLVPVIW EGREP++EKKGFGAPA A + ALPSIGEDFEKRAQSITAK
Sbjct: 301 ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA-AAATALPSIGEDFEKRAQSITAK 360

Query: 363 SKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQK 422
           SKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGR+RRSGRGMPDWQK
Sbjct: 361 SKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRIRRSGRGMPDWQK 420

Query: 423 IIEELPPMDALLSKLER 440
           IIEELPPM+ALLSKLE+
Sbjct: 421 IIEELPPMEALLSKLEK 434

[Close]

BLAST of CmaCh14G008940 vs. ExPASy TrEMBL
Match: A0A1S3BYE8 (protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494784 PE=4 SV=1)

HSP 1 Score: 784.3 bits (2024), Expect = 2.7e-223
Identity = 401/437 (91.76%), Postives = 419/437 (95.88%), Query Frame = 0


Query: 3   LGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESAES 62
           + MATLP+FH L TLSNPKS TILR RLPT  SQR FH+SIL CSSTSQSPE N++SAES
Sbjct: 1   MAMATLPLFHHLPTLSNPKSPTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAES 60

Query: 63  SVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCLRV 122
            VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAA YNKACCHAYRGEGKKAADCLRV
Sbjct: 61  CVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKACCHAYRGEGKKAADCLRV 120

Query: 123 ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR 182
           ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR
Sbjct: 121 ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR 180

Query: 183 GVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVALFL 242
           GVRRFFYVALSAAAGISLLFN+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFL
Sbjct: 181 GVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFL 240

Query: 243 WDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQKA 302
           WDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Sbjct: 241 WDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA 300

Query: 303 ERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSITAK 362
           ERFRTELLRRGVLLVPVIW EGREP++EKKGFGAPA A + ALPSIGEDFEKRAQSITAK
Sbjct: 301 ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA-AAATALPSIGEDFEKRAQSITAK 360

Query: 363 SKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQK 422
           SKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGR+RRSGRGMPDWQK
Sbjct: 361 SKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRIRRSGRGMPDWQK 420

Query: 423 IIEELPPMDALLSKLER 440
           IIEELPPM+ALLSKLE+
Sbjct: 421 IIEELPPMEALLSKLEK 434

[Close]

BLAST of CmaCh14G008940 vs. ExPASy TrEMBL
Match: A0A0A0KT96 (TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G001650 PE=4 SV=1)

HSP 1 Score: 780.8 bits (2015), Expect = 3.0e-222
Identity = 398/437 (91.08%), Postives = 418/437 (95.65%), Query Frame = 0


Query: 3   LGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESAES 62
           + MATLP+FH L TLSNPKS TILR RLPT  SQR F +SIL CSSTSQSPE N++SAES
Sbjct: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPT--SQRTFRLSILSCSSTSQSPEANLQSAES 60

Query: 63  SVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCLRV 122
            VN GLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYNKACCHAYRGEGKKAADCLRV
Sbjct: 61  CVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRV 120

Query: 123 ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR 182
           ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR
Sbjct: 121 ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR 180

Query: 183 GVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVALFL 242
           GVR+FFYVALSAAAGISLLFN+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFL
Sbjct: 181 GVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFL 240

Query: 243 WDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQKA 302
           WDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Sbjct: 241 WDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA 300

Query: 303 ERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSITAK 362
           ERFRTELLRRGVLLVPVIW EGREP++EKKGFGAP  A +AALPSIGEDFEKRAQSITAK
Sbjct: 301 ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAK 360

Query: 363 SKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQK 422
           SKLKAEIRFRA+VISPAEWESWIR+QQ+SEGVTPGEDVYIILRLDGRVRRSGRGMPDWQK
Sbjct: 361 SKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQK 420

Query: 423 IIEELPPMDALLSKLER 440
           IIEELPPM+ALLSKLE+
Sbjct: 421 IIEELPPMEALLSKLEK 435

[Close]

BLAST of CmaCh14G008940 vs. NCBI nr
Match: XP_022983449.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 857.4 bits (2214), Expect = 5.2e-245
Identity = 439/439 (100.00%), Postives = 439/439 (100.00%), Query Frame = 0


Query: 1   MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESA 60
           MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESA
Sbjct: 1   MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESA 60

Query: 61  ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL 120
           ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL
Sbjct: 61  ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL 120

Query: 121 RVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP 180
           RVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP
Sbjct: 121 RVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP 180

Query: 181 FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL 240
           FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL
Sbjct: 181 FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL 240

Query: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ 300
           FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ
Sbjct: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ 300

Query: 301 KAERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT 360
           KAERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT
Sbjct: 301 KAERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT 360

Query: 361 AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420
           AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW
Sbjct: 361 AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420

Query: 421 QKIIEELPPMDALLSKLER 440
           QKIIEELPPMDALLSKLER
Sbjct: 421 QKIIEELPPMDALLSKLER 439

[Close]

BLAST of CmaCh14G008940 vs. NCBI nr
Match: XP_022935311.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 850.5 bits (2196), Expect = 6.4e-243
Identity = 436/439 (99.32%), Postives = 437/439 (99.54%), Query Frame = 0


Query: 1   MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESA 60
           MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPE NVESA
Sbjct: 1   MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPEANVESA 60

Query: 61  ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL 120
           ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL
Sbjct: 61  ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL 120

Query: 121 RVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP 180
           RVALREY+LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP
Sbjct: 121 RVALREYDLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP 180

Query: 181 FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL 240
           FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL
Sbjct: 181 FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL 240

Query: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ 300
           FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ
Sbjct: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ 300

Query: 301 KAERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT 360
           KAERFRTELLRRGVLLVPVIWREGRE RMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT
Sbjct: 301 KAERFRTELLRRGVLLVPVIWREGRETRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT 360

Query: 361 AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420
           AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW
Sbjct: 361 AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420

Query: 421 QKIIEELPPMDALLSKLER 440
           QKIIEELPPMDALLSKLER
Sbjct: 421 QKIIEELPPMDALLSKLER 439

[Close]

BLAST of CmaCh14G008940 vs. NCBI nr
Match: XP_023528576.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 850.1 bits (2195), Expect = 8.4e-243
Identity = 434/439 (98.86%), Postives = 437/439 (99.54%), Query Frame = 0


Query: 1   MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESA 60
           MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQR FHVSILCCSSTSQSPE N+ESA
Sbjct: 1   MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRPFHVSILCCSSTSQSPEANIESA 60

Query: 61  ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL 120
           ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNP+EAQAALYNKACCHAYRGEGKKAADCL
Sbjct: 61  ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPLEAQAALYNKACCHAYRGEGKKAADCL 120

Query: 121 RVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP 180
           RVALREY+LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP
Sbjct: 121 RVALREYDLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP 180

Query: 181 FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL 240
           FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL
Sbjct: 181 FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL 240

Query: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ 300
           FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ
Sbjct: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ 300

Query: 301 KAERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT 360
           KAERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT
Sbjct: 301 KAERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT 360

Query: 361 AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420
           AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW
Sbjct: 361 AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420

Query: 421 QKIIEELPPMDALLSKLER 440
           QKIIEELPPMDALLSKLER
Sbjct: 421 QKIIEELPPMDALLSKLER 439

[Close]

BLAST of CmaCh14G008940 vs. NCBI nr
Match: KAG6581260.1 (Protein LOW PSII ACCUMULATION 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 848.2 bits (2190), Expect = 3.2e-242
Identity = 435/439 (99.09%), Postives = 436/439 (99.32%), Query Frame = 0


Query: 1   MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESA 60
           MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPE NVESA
Sbjct: 1   MALGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPEANVESA 60

Query: 61  ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL 120
           ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL
Sbjct: 61  ESSVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCL 120

Query: 121 RVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP 180
           RVALREY+LKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP
Sbjct: 121 RVALREYDLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP 180

Query: 181 FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL 240
           FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL
Sbjct: 181 FRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVAL 240

Query: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ 300
           FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ
Sbjct: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQ 300

Query: 301 KAERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT 360
           KAERFRTELLRRGVLLVPVIWREGRE RMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT
Sbjct: 301 KAERFRTELLRRGVLLVPVIWREGRETRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSIT 360

Query: 361 AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420
           AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSG GMPDW
Sbjct: 361 AKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGTGMPDW 420

Query: 421 QKIIEELPPMDALLSKLER 440
           QKIIEELPPMDALLSKLER
Sbjct: 421 QKIIEELPPMDALLSKLER 439

[Close]

BLAST of CmaCh14G008940 vs. NCBI nr
Match: XP_008454363.1 (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo] >KAA0044367.1 protein LOW PSII ACCUMULATION 1 [Cucumis melo var. makuwa] >TYK29495.1 protein LOW PSII ACCUMULATION 1 [Cucumis melo var. makuwa])

HSP 1 Score: 784.3 bits (2024), Expect = 5.6e-223
Identity = 401/437 (91.76%), Postives = 419/437 (95.88%), Query Frame = 0


Query: 3   LGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESAES 62
           + MATLP+FH L TLSNPKS TILR RLPT  SQR FH+SIL CSSTSQSPE N++SAES
Sbjct: 1   MAMATLPLFHHLPTLSNPKSPTILRPRLPT--SQRTFHLSILSCSSTSQSPEANLQSAES 60

Query: 63  SVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCLRV 122
            VNLGLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAA YNKACCHAYRGEGKKAADCLRV
Sbjct: 61  CVNLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKACCHAYRGEGKKAADCLRV 120

Query: 123 ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR 182
           ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR
Sbjct: 121 ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR 180

Query: 183 GVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVALFL 242
           GVRRFFYVALSAAAGISLLFN+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFL
Sbjct: 181 GVRRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFL 240

Query: 243 WDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQKA 302
           WDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Sbjct: 241 WDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA 300

Query: 303 ERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSITAK 362
           ERFRTELLRRGVLLVPVIW EGREP++EKKGFGAPA A + ALPSIGEDFEKRAQSITAK
Sbjct: 301 ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA-AAATALPSIGEDFEKRAQSITAK 360

Query: 363 SKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQK 422
           SKLKAEIRFRA+VISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGR+RRSGRGMPDWQK
Sbjct: 361 SKLKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRIRRSGRGMPDWQK 420

Query: 423 IIEELPPMDALLSKLER 440
           IIEELPPM+ALLSKLE+
Sbjct: 421 IIEELPPMEALLSKLEK 434

[Close]

BLAST of CmaCh14G008940 vs. TAIR 10
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 596.3 bits (1536), Expect = 2.0e-170
Identity = 300/415 (72.29%), Postives = 351/415 (84.58%), Query Frame = 0


Query: 34  NSQRAFHVSILCCSSTSQSPETNVES---------AESSVNLGLQLFSKGRVKEALVQFE 93
           NS+R +   +   +S+S SP ++  S         AE  VN GL LF +GRVK+ALVQFE
Sbjct: 40  NSRRNWDSHLFVYASSSSSPSSSPPSPNSPTDDLTAELCVNTGLDLFKRGRVKDALVQFE 99

Query: 94  AALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFR 153
            AL + PNP+E+QAA YNKACCHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFR
Sbjct: 100 TALSLAPNPIESQAAYYNKACCHAYRGEGKKAVDCLRIALRDYNLKFATILNDPDLASFR 159

Query: 154 ALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNL 213
           ALPEFKELQEEAR+GGEDIG  FRRDLKLISEV+APFRGVR+FFY A +AAAGIS+ F +
Sbjct: 160 ALPEFKELQEEARLGGEDIGDNFRRDLKLISEVRAPFRGVRKFFYFAFAAAAGISMFFTV 219

Query: 214 PRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRL 273
           PRL +AI+GG+ AP++ ET GN A+N+GGIVV V+LFLW+NKKEEEQ+ QI+R+ETLSRL
Sbjct: 220 PRLVQAIRGGDGAPNLLETTGNAAINIGGIVVMVSLFLWENKKEEEQMVQITRDETLSRL 279

Query: 274 PLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWREG 333
           PLRLSTNRVVELVQLRDTVRPVILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+W E 
Sbjct: 280 PLRLSTNRVVELVQLRDTVRPVILAGKKETVTLAMQKADRFRTELLRRGVLLVPVVWGER 339

Query: 334 REPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSITAKSKLKAEIRFRADVISPAEWESW 393
           + P +EKKGFGA + A + +LPSIGEDF+ RAQS+ A+SKLK EIRF+A+ +SP EWE W
Sbjct: 340 KTPEIEKKGFGASSKA-ATSLPSIGEDFDTRAQSVVAQSKLKGEIRFKAETVSPGEWERW 399

Query: 394 IRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMDALLSKLER 440
           IRDQQ SEGV PG+DVYIILRLDGRVRRSGRGMPDW +I +ELPPMD +LSKLER
Sbjct: 400 IRDQQISEGVNPGDDVYIILRLDGRVRRSGRGMPDWAEISKELPPMDDVLSKLER 453

[Close]

BLAST of CmaCh14G008940 vs. TAIR 10
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 140.6 bits (353), Expect = 3.0e-33
Identity = 85/269 (31.60%), Postives = 139/269 (51.67%), Query Frame = 0


Query: 170 DLKLISEVQAPFRGVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAV 229
           D ++ SEV +PFR VR FFY+A  A+  +  L    RL  A+     + +V E V  L V
Sbjct: 94  DARIRSEVLSPFRSVRMFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGV 153

Query: 230 NVGGIVVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-STNRVVELVQLRDTVRPVIL 289
           ++G   +F  L+  +NK +  Q+A++SR E L +L +R+   N+V+ +  LR   R VI 
Sbjct: 154 DIGAASLFAFLYFNENKTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVIC 213

Query: 290 AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSI 349
           AG  E +  A ++++ +   L+ RGV++V     +G  P +E                  
Sbjct: 214 AGPAEFIEEAFKRSKEYTQGLVERGVVVVAYA-TDGNSPVLE------------------ 273

Query: 350 GEDFEKRAQSITAKSKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDG 409
              F++   +    S+ + ++ +R   +   EWE W+ +Q+K   V+    VY+ LRLDG
Sbjct: 274 ---FDETDIADEEMSQRRKKL-WRVTPVFVPEWEKWLNEQKKLANVSSDSPVYLSLRLDG 333

Query: 410 RVRRSGRGMPDWQKIIEELPPMDALLSKL 438
           RVR SG G P WQ  + +LPP+  + + L
Sbjct: 334 RVRASGVGYPPWQAFVAQLPPVKGMWTGL 339

The following BLAST results are available for this feature:

BLAST of CmaCh14G008940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRY4	2.9e-169	72.29	Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CmaCh14G008940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J7F4	2.5e-245	100.00	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1F472	3.1e-243	99.32	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5A7TR76	2.7e-223	91.76	Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BYE8	2.7e-223	91.76	protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 OS=Cucumis melo OX=365...	[more]
A0A0A0KT96	3.0e-222	91.08	TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G001650 ...	[more]

BLAST of CmaCh14G008940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983449.1	5.2e-245	100.00	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]	[more]
XP_022935311.1	6.4e-243	99.32	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata]	[more]
XP_023528576.1	8.4e-243	98.86	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
KAG6581260.1	3.2e-242	99.09	Protein LOW PSII ACCUMULATION 1, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
XP_008454363.1	5.6e-223	91.76	PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis me...	[more]

BLAST of CmaCh14G008940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02910.1	2.0e-170	72.29	tetratricopeptide repeat (TPR)-containing protein	[more]
AT4G28740.1	3.0e-33	31.60	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 60..93 e-value: 0.0075 score: 25.5
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 60..93 score: 10.2074
IPR021883	Protein LOW PSII ACCUMULATION 1-like	PFAM	PF11998	DUF3493	coord: 168..245 e-value: 3.1E-25 score: 88.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 46..146 e-value: 1.2E-9 score: 40.0
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 53..126
None	No IPR available	PANTHER	PTHR35498	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 32..439
None	No IPR available	PANTHER	PTHR35498:SF4	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 32..439

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G008940.1	CmaCh14G008940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010270	photosystem II oxygen evolving complex assembly
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding