CmaCh14G007080 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh14G007080
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description30S ribosomal protein S21, chloroplastic-like
LocationCma_Chr14: 3586616 .. 3589265 (-)
RNA-Seq ExpressionCmaCh14G007080
SyntenyCmaCh14G007080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTTATCCACAAACGCTAGAAGAGATAGAGAGGAGATGATCGAACCCTCAAAGTTGCGAACTCTACACTGAATTTACAGACCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCAAAACCACCGCCCCCAAAGCCCCTTCAGCCCCTCATTGCCTCTCCTTCTCCGGCGAATCAGGCGGCTGCTCAATTTCAGACGCTCAAATCCAGAGATGGATCGGTTGCTCTAAGCCCCCAACAGGCTCCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCACTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTCTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGCGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATATTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGTCTGTTTCTAAAATTTCTTGTGGTTTCTTTTGGGATTTGTGTTTTTGGTTTGAATTCTGTGATTGTTTGTTTGGATTTTGATTTATTGTGATTCTTCTCCTTGAATTGTTTGCGATTTGTGTCCTGTCGTTTTTTTCTTTTAGTGTTGAATTTGATTGCTAGGAAGGTAACCCGTTAGATGTATGAGAGAAAAGTACCATAAATGGTTGGTCTCATTAATATTGATTCTTCTTCGGTCCTCGTTAAGCTTAGCTTCCCTCGCTTCCCTTTCCCAATGGCTACTCAATGGCTACTCAGTGTTTATGGTGAGCACGATAACTAGTACACTAGAGGTGCGTCCTTCCTGATTTTTATACTGTGGTTACTAAGAGACATGCAGATTTTTTAATCTATATTCAATAGTTATTATGAGGTAGCTGACCTTGTTGAACGATTGGTCCTAGAGTAGGAACATATTCTTGTAAATGTGTATATCTTTGCCAATATGAACAGGGTGTAGAGAACGAAAAGGTTGTTTGAACTTGCCCGATGACGAAGTGAAAATAACTACTCGGTAAAGGACTGAGAGTCTTGCTGCTTGTCATTGAAAATGCGATTGTTGCATTCTAAACCATCTACTCCATAGAAAACTCCTCGTAAAGAATGTTTTGTTCTCCTCTTCAACCGATGTGGAATCTCACAATCCACCCCATTCAGAGTCCAATGTCCTCTCTGGCGCTCATTCTCTTCTCCAATTGATGTGGGACCCCCTAATCCACCCCCGACCGCTTTGTGTCCACCCCTCTTCGGGGGCTCAGCCTCCTCGATGACACATCGTCCAGTGTCTGGTTCTAATACTATTTGTAGCAGCCCAAGCCCACCATTAGTAGATAGTGTTCTCTTTGGGCTTTCTCCTTCGAGTTTCCCCCTCAGGATTTTTAAAACACGTCTGTTAGGGAGAGGTTTCTATACCCTTAAAAATGCTTCGTTCTCCTCTCCAACCGATGTGGGATCTCAGATAAAAGTGCTAGAATTCATTTGCAAAGGGACAGCTACTGAATAGGTGAATTTGAGTTTCCATATTCCCCATGCATAATATAATAAGGGACAGCTAATGCTTTCTCTGTAGGACAACCTGAGTATTGATGTTGGAATAGCTTAGCTCCCAAATAAAGAATTCGATCTTTTTGGGATATGAACCAAAGACTCTGGTTCTTCATTTTGGGAGGAAGGTTAACCCAATTGTCGAACCCGAGAGAATTCCTTCCACACAAGATTGGAGAAAGACCAAACTCGGTAATGAATCTATGGAGAACCCAACTCACTTATCGATCTCAAAGTATGGTTAATCTGCTTATTCGAGTGAACAAAGAAACCGCATGAGTGAGGCCAACGCAACTATAGCTTTTCTGGTTGAGTGCTGAATGCCAACGAGAAGGTGCACCATTTTTTATTGATTAAGAATGACCAGAGATTTCTTCCTTTTTCGTTTCGTTATTATTGTATTTTGTTCTCGTAAGTAGATAATTTCACCGAACATCTTTTATCTCGAAACCAAGTACACCATTACTCGAGATGGAAGATGGCTGTAGAAAAACGTCTTATTAAGTGAATTCTTGAGGCCCCATTAGCTAATTACAACGTTTGTGATGGGAAAATGGATATCATTTACGTGCTAAGGTGTTTGATGAAACTGAGTTATGATTTGGTTGATGAACAGGCGGCCACAGCAAAGATTTACACCACAAGACAAGCAGGATGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAACCCCAATCCAATCCAATACAATCCAAAACTTCAGCCTCACCACAATGTTTTAATGTTTTCTGCTCATCTTTTGAATTTGGGAAGCTGTTTGTACTCTGTAATCTAAGTTGTTTTCTATGTAATATCATCTTTAGTTGACAAGTTTCTTGCAATATAATAAGTAGATGTAATTCATTGTGTTTCGATCAAATAATCATTTCTTGACTCGTAAGGTGGAAACATAGCGGGTTGATATTGTCGACTTGATGATTATACCTCCCAGAGTATTCTAAAGATCCGGTGACCTTTTTGAGGTTATCATACGAGACGTAGATAT

mRNA sequence

AACTTATCCACAAACGCTAGAAGAGATAGAGAGGAGATGATCGAACCCTCAAAGTTGCGAACTCTACACTGAATTTACAGACCCATCCATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCAAAACCACCGCCCCCAAAGCCCCTTCAGCCCCTCATTGCCTCTCCTTCTCCGGCGAATCAGGCGGCTGCTCAATTTCAGACGCTCAAATCCAGAGATGGATCGGTTGCTCTAAGCCCCCAACAGGCTCCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCACTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTCTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGCGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATATTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGCGGCCACAGCAAAGATTTACACCACAAGACAAGCAGGATGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAACCCCAATCCAATCCAATACAATCCAAAACTTCAGCCTCACCACAATGTTTTAATGTTTTCTGCTCATCTTTTGAATTTGGGAAGCTGTTTGTACTCTGTAATCTAAGTTGTTTTCTATGTAATATCATCTTTAGTTGACAAGTTTCTTGCAATATAATAAGTAGATGTAATTCATTGTGTTTCGATCAAATAATCATTTCTTGACTCGTAAGGTGGAAACATAGCGGGTTGATATTGTCGACTTGATGATTATACCTCCCAGAGTATTCTAAAGATCCGGTGACCTTTTTGAGGTTATCATACGAGACGTAGATAT

Coding sequence (CDS)

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCTTCAAAACCACCGCCCCCAAAGCCCCTTCAGCCCCTCATTGCCTCTCCTTCTCCGGCGAATCAGGCGGCTGCTCAATTTCAGACGCTCAAATCCAGAGATGGATCGGTTGCTCTAAGCCCCCAACAGGCTCCGAAACATTCCGAGCCCTTATCGGCGGAATTAGCCTCCGTTATCTGCCCCTCACTGGCCTTTGCTAATACTATGTTCTTCAGATCGGCTTATAATGTGCAGGTGATTGTAGATGATAATGAGCCGGAGGAGCGGCTTCTGAATAGATTCCGGCGAGAGGTTATGAGAGCCGGCGTGATTCAGGAGTGTAAGAGACGGAAATTCTTTGAAAATCCTCATGATATTAAGAAGCGCAAGTCTCGCGAGGCTGCTAAACGTAACCGCCGGAGGCGGCCACAGCAAAGATTTACACCACAAGACAAGCAGGATGTGCCTGCAACCAAACAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCTTATTAA

Protein sequence

MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIPY
Homology
[Close]
BLAST of CmaCh14G007080 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 4.5e-36
Identity = 94/186 (50.54%), Postives = 121/186 (65.05%), Query Frame = 0 

Query: 2   ASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQ----AP 61
           +SL +F S L PS    P    P   +P+          +L S+  S+++S ++    A 
Sbjct: 5   SSLLNFLSPLFPSNTSLPPSSNPKFPNPN----------SLSSQQNSISISSKKHENAAI 64

Query: 62  KHSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQ 121
              E    +L +V+CPSLAF+NT++FRSAYNVQV+VDDNE EERLLNRFRREVMRAGVIQ
Sbjct: 65  AKKEEYPGDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGVIQ 124

Query: 122 ECKRRKFFENPHDIKKRKSREAAKRNRRRR--PQQRFTPQDKQDVPATKQEADDDNWDLP 181
           ECKRR++FEN  + KKRK REAAKRN RRR  P +   P  ++     K+E D DNWD+P
Sbjct: 125 ECKRRRYFENKQEEKKRKHREAAKRNSRRRRGPFRGPFPGKEEATKVDKKEDDGDNWDMP 180

[Close]
BLAST of CmaCh14G007080 vs. ExPASy Swiss-Prot
Match: B8GPU0 (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=rpsU PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 2.4e-05
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 91  VIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDIKKRKSREAAKRNRRR 147
           V V +NEP E  L RF+R   +AGV+ E +RR+F+E P +I+KRK+  A KR  +R
Sbjct: 4   VRVKENEPFEVALRRFKRTCEKAGVLTEVRRREFYEKPTEIRKRKAAAAVKRQAKR 59

[Close]
BLAST of CmaCh14G007080 vs. ExPASy Swiss-Prot
Match: A1WW12 (30S ribosomal protein S21 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=349124 GN=rpsU PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.1e-05
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 0 

Query: 91  VIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDIKKRKSREAAKRNRRR--RP 150
           V V +NEP E  L RF+R   +AGV+ E +RR+++E P  ++KRK   A KR+ +R  R 
Sbjct: 4   VKVRENEPFEVALRRFKRSCEKAGVLSEIRRREYYEKPTQVRKRKQAAAVKRHMKRLNRE 63

Query: 151 QQR 152
           QQR
Sbjct: 64  QQR 66

[Close]
BLAST of CmaCh14G007080 vs. ExPASy Swiss-Prot
Match: P48949 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsU PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.1e-05
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 90  QVIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDIKKRKSREAAKRNRRRR 148
           QV+V  NEP E  L RF+R+V +AG+  + K+ +FFE P +  K K +EA +R +R R
Sbjct: 3   QVVVGQNEPIESALRRFKRQVAKAGIYTDFKKHQFFETPQE--KHKRKEATRRRQRSR 58

[Close]
BLAST of CmaCh14G007080 vs. ExPASy Swiss-Prot
Match: Q04T16 (30S ribosomal protein S21 OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) OX=355277 GN=rpsU PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.6e-04
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 0 

Query: 89  VQVIVDDNEPEERLLNRFRREVMRAGVIQECKRRKFFENPHDIKKRKSREAAKRNRRRRP 148
           V +IV D E  E  L RF+R+   AG++ E KRR++FE P  IKK+K+ E+AKR   ++ 
Sbjct: 2   VGIIVKDGESIESALKRFKRDCANAGIMSEIKRREYFEKP-SIKKKKAIESAKRKAEKK- 61

Query: 149 QQRFTPQDK 158
           ++ F+ +DK
Sbjct: 62  KRLFSKKDK 68

[Close]
BLAST of CmaCh14G007080 vs. ExPASy TrEMBL
Match: A0A6J1J5C2 (30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481494 PE=3 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.5e-92
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120

Query: 121 RRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180
           RRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 121 RRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180

Query: 181 Y 182
           Y
Sbjct: 181 Y 181

[Close]
BLAST of CmaCh14G007080 vs. ExPASy TrEMBL
Match: A0A6J1F281 (30S ribosomal protein S21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441722 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 3.9e-91
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQA KHS
Sbjct: 32  MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHS 91

Query: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 92  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 151

Query: 121 RRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180
           RRKFFENPHD+KKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 152 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 211

Query: 181 Y 182
           Y
Sbjct: 212 Y 212

[Close]
BLAST of CmaCh14G007080 vs. ExPASy TrEMBL
Match: A0A1S3BNG4 (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 6.2e-81
Identity = 166/183 (90.71%), Postives = 171/183 (93.44%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIA-SPSPANQAAAQFQTLKSRDGSVALSPQQAPKH 60
           MASLSSFFSFLLPSKPPPPKP QPLIA SPSP N AAAQFQTLKSRDGSVAL PQQ P H
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 108

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 109 SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 168

Query: 121 KRRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEG- 180
           KRR+FFEN  D++KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPEE  
Sbjct: 169 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEAD 228

Query: 181 IPY 182
           IPY
Sbjct: 229 IPY 231

[Close]
BLAST of CmaCh14G007080 vs. ExPASy TrEMBL
Match: A0A5D3C287 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001120 PE=3 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 8.1e-81
Identity = 166/183 (90.71%), Postives = 171/183 (93.44%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIA-SPSPANQAAAQFQTLKSRDGSVALSPQQAPKH 60
           MASLSSFFSFLLPSKPPPPKP QPLIA SPSP N AAAQFQTLKSRDGSVAL PQQ P H
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLP-EEG 180
           KRR+FFEN  D++KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLP EE 
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEED 180

Query: 181 IPY 182
           IPY
Sbjct: 181 IPY 183

[Close]
BLAST of CmaCh14G007080 vs. ExPASy TrEMBL
Match: Q8VWX5 (Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.9e-79
Identity = 161/182 (88.46%), Postives = 170/182 (93.41%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIA-SPSPANQAAAQFQTLKSRDGSVALSPQQAPKH 60
           MASLSSFFSFLLPSKPPPPKP QP IA SPSP+N AA QFQTLKSRDGSVAL+PQQ P H
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 67

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 68  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 127

Query: 121 KRRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPE-EG 180
           KRR+FFEN  D++KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPE E 
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 187

[Close]
BLAST of CmaCh14G007080 vs. NCBI nr
Match: XP_022982709.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 347.4 bits (890), Expect = 7.3e-92
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120

Query: 121 RRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180
           RRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 121 RRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180

Query: 181 Y 182
           Y
Sbjct: 181 Y 181

[Close]
BLAST of CmaCh14G007080 vs. NCBI nr
Match: XP_023527532.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 347.1 bits (889), Expect = 9.5e-92
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120

Query: 121 RRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180
           RRKFFENPHD+KKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180

Query: 181 Y 182
           Y
Sbjct: 181 Y 181

[Close]
BLAST of CmaCh14G007080 vs. NCBI nr
Match: KAG6581093.1 (30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 344.0 bits (881), Expect = 8.0e-91
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQA KHS
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHS 60

Query: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120

Query: 121 RRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180
           RRKFFENPHD+KKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 121 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180

Query: 181 Y 182
           Y
Sbjct: 181 Y 181

[Close]
BLAST of CmaCh14G007080 vs. NCBI nr
Match: XP_022934586.1 (30S ribosomal protein S21, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 344.0 bits (881), Expect = 8.0e-91
Identity = 179/181 (98.90%), Postives = 180/181 (99.45%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQA KHS
Sbjct: 32  MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQASKHS 91

Query: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 92  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 151

Query: 121 RRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180
           RRKFFENPHD+KKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 152 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 211

Query: 181 Y 182
           Y
Sbjct: 212 Y 212

[Close]
BLAST of CmaCh14G007080 vs. NCBI nr
Match: KAG7017820.1 (30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 341.7 bits (875), Expect = 4.0e-90
Identity = 178/181 (98.34%), Postives = 179/181 (98.90%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAA QFQTLKSRDGSVALSPQQA KHS
Sbjct: 26  MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAADQFQTLKSRDGSVALSPQQASKHS 85

Query: 61  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 120
           EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK
Sbjct: 86  EPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQECK 145

Query: 121 RRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 180
           RRKFFENPHD+KKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP
Sbjct: 146 RRKFFENPHDVKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPEEGIP 205

Query: 181 Y 182
           Y
Sbjct: 206 Y 206

[Close]
BLAST of CmaCh14G007080 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 157.9 bits (398), Expect = 7.6e-39
Identity = 92/186 (49.46%), Postives = 128/186 (68.82%), Query Frame = 0 

Query: 3   SLSSFFSFLLP----SKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPK 62
           SL+SF SF+ P    +KP PP    P +  PSP        Q  ++     +++ ++   
Sbjct: 6   SLTSFISFISPFKSQTKPTPP----PNLTLPSPTIS-----QRRRNDLAIESMAVEETSS 65

Query: 63  HSEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQE 122
            +  LS+ELASVICPSLA++NT+FF S YNVQV V+DNE EERL+NRFRREVMR GVIQE
Sbjct: 66  TASSLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQE 125

Query: 123 CKRRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPAT----KQEADDDNWDL 181
           CKRR++FEN  D KKR++R+AAKRN++RRPQ RFT + +++  A     K++ ++DNW++
Sbjct: 126 CKRRRYFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWEM 182

[Close]
BLAST of CmaCh14G007080 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-21
Identity = 73/189 (38.62%), Postives = 111/189 (58.73%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           + SLS   S LL SKPP P  L+P I  PS  +   +Q  ++ ++            +H 
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKP-ITLPSSVSARTSQHLSMTTK--------ILTAEHD 65

Query: 61  EPLSAELASVICPSLAFANTMFFRSA-YNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           + ++     V  PSLA AN +FF+S+ YNV+V+  D E EE+L+N F+R   RAGV+QE 
Sbjct: 66  DVIN----RVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQES 125

Query: 121 KRRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDV-----PATKQEADDDNWDL 180
           +RR+FFE+  + K RK++EAAK+ R+RRP  +  P    ++      A++++  DD+W+L
Sbjct: 126 RRRRFFESSLEKKTRKTKEAAKKYRKRRPNPKPKPLSTSEIRKHNRNASREDEQDDHWEL 181

Query: 181 PEEG--IPY 182
           P E   IPY
Sbjct: 186 PPEDIEIPY 181

[Close]
BLAST of CmaCh14G007080 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein )

HSP 1 Score: 85.1 bits (209), Expect = 6.3e-17
Identity = 60/147 (40.82%), Postives = 89/147 (60.54%), Query Frame = 0 

Query: 1   MASLSSFFSFLLPSKPPPPKPLQPLIASPSPANQAAAQFQTLKSRDGSVALSPQQAPKHS 60
           + SLS   S LL SKPP P  L+P I  PS  +   +Q  ++ ++            +H 
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKP-ITLPSSVSARTSQHLSMTTK--------ILTAEHD 65

Query: 61  EPLSAELASVICPSLAFANTMFFRSA-YNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120
           + ++     V  PSLA AN +FF+S+ YNV+V+  D E EE+L+N F+R   RAGV+QE 
Sbjct: 66  DVIN----RVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQES 125

Query: 121 KRRKFFENPHDIKKRKSREAAKRNRRR 147
           +RR+FFE+  + K RK++EAAK+ R+R
Sbjct: 126 RRRRFFESSLEKKTRKTKEAAKKYRKR 139

The following BLAST results are available for this feature:
BLAST of CmaCh14G007080 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P820244.5e-3650.5430S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P... [more]
B8GPU02.4e-0548.2130S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX... [more]
A1WW129.1e-0546.0330S ribosomal protein S21 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=... [more]
P489499.1e-0544.8330S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111... [more]
Q04T161.6e-0443.4830S ribosomal protein S21 OS=Leptospira borgpetersenii serovar Hardjo-bovis (str... [more]
BLAST of CmaCh14G007080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J5C23.5e-92100.0030S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1F2813.9e-9198.9030S ribosomal protein S21, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A1S3BNG46.2e-8190.71uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=... [more]
A0A5D3C2878.1e-8190.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Q8VWX59.9e-7988.46Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1[more]
BLAST of CmaCh14G007080 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022982709.17.3e-92100.0030S ribosomal protein S21, chloroplastic-like [Cucurbita maxima][more]
XP_023527532.19.5e-9299.4530S ribosomal protein S21, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
KAG6581093.18.0e-9198.9030S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022934586.18.0e-9198.9030S ribosomal protein S21, chloroplastic-like [Cucurbita moschata][more]
KAG7017820.14.0e-9098.3430S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of CmaCh14G007080 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G27160.17.6e-3949.46Ribosomal protein S21 family protein [more]
AT5G63300.11.4e-2138.62Ribosomal protein S21 family protein [more]
AT5G63300.26.3e-1740.82Ribosomal protein S21 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001911Ribosomal protein S21PRINTSPR00976RIBOSOMALS21coord: 92..100
score: 42.59
coord: 112..122
score: 38.64
coord: 124..134
score: 40.15
coord: 100..109
score: 43.33
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 90..144
e-value: 6.7E-20
score: 70.6
IPR001911Ribosomal protein S21TIGRFAMTIGR00030TIGR00030coord: 89..146
e-value: 1.1E-14
score: 51.9
IPR001911Ribosomal protein S21PANTHERPTHR21109MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21coord: 2..181
IPR001911Ribosomal protein S21HAMAPMF_00358Ribosomal_S21coord: 88..144
score: 14.144657
IPR038380Ribosomal protein S21 superfamilyGENE3D1.20.5.1150Ribosomal protein S8coord: 103..141
e-value: 4.9E-13
score: 50.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..181
NoneNo IPR availablePANTHERPTHR21109:SF17PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATEDcoord: 2..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh14G007080.1CmaCh14G007080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome