CmaCh14G000200 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh14G000200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr14: 89219 .. 91079 (-)
RNA-Seq Expression	CmaCh14G000200
Synteny	CmaCh14G000200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGAACTTAATTGTGCCAAGCTTGGAATGGACCGATTAAAAACCCATCTGGACCAGAAAGTAGCCGGCCCAATGACTAACTCTTGCCCAGTTGGCCTCCCCTCGGGGACCAAGTCGCAAGGATTCCCGCCAGTCCAAATGGGACAAGTGGGAAACCGATTTTATGGACCGCCTGTTCTTCGAATGATTGGGCAAATCACCGTTGTCGATGGGAGAACCTCTAATTCTCTCGCTTATAGTTTCGCTATCGTCGCTGATTCCGATTTTGCTGACTTACGGTCCCGGGGACGTGGTTCCGACCAGCAAGATAGGACTGTATCAACTCGGTTCATTTTCCTATTTTCGTTTGTCGCACACAAGTTTTCACGGATGCTTGTTTGTATCTTCTTGTTTCCTACTACTTGTTCGTCTCTTTCTGAGATACATATTTTGTTTTTTTTCAGTCGACACCAGTCTGGGACATCATGATTGGTCGATATTCTCCAATTTTTGGCCTCAATCGCGAGGTATTCATCGATTGAGTTGTATGTGTTGTCCATCTTTTCGACATTGCTTCTTCATTTTCTGTTATGCTTAAATTTCTTTGACTTTACGTCGACTTCTAGGGGTGCTGAATTTTTTTGAACTAAAACTGACGGTTTAAGAGTACATAACTGAACAATAAGTGTCTATATATATCATAATCTAGTAACCTTATGCTTAAGTTCTTCCTATGATGACGAAAATGGATAGCGAAGATCGGTTCTTCCAGAGTGAGAATTATAATATACTCGGTCCAATCGTTTTACTAGCTAGCAACCTGCTGAGGATACTCTTACTCCACTGTAGTTTCGATTATTTATTTCCATTCTTATAGTGTTATCTCTTAGGCTGTATGAAGAAATTTATTGCATCGCTTTTTTCTTCTTGAAACATATACTTTAACAAAGGAAAGGTGTAAAACTATTTGTAGTATGGTACAACCAATACCCGAAGTTGAAATATCTCCTCTCTTCATTTGCCTGTCTTTTGAAATTTTAGACGGTTGCAATATTTTCTAATGCCTGCTATCTATCTCTGAGTTCGTACTGTTTCCCTTACTAAGTTCTTAACACTGTTGCATCGCACCTCTATGTGGAAATGGAGGTGGTTGACCCTCACGATGAGAGTGTAGGCGACGTTTACGGATTACAACCTTCAGGTTTTTTAATGCGCATTATCTCCTTATTTTACCTTTAGTTTTGGAAAAAAATGAATGTATGCGTCCAAATCTTTGTAGGTTGTGTCAATTTAAACATGAACTATAATCCTATCAATTAAACTCATAAACGATCACTAGACTAGAATTGATGTATGAAAACTTTTCAAAGGAAATCTTAATTAAGAGTCTAATTTGATTCATTTATGAAATTTTAGGGATTTAATCGATAAAATAATAAGTGTCTGATGTTATCAAACTGAACTTGTTGGAGGGTTCAGGGTAAATTGAACACAATGTAGGTATTATTAGTTCACTGGATTGCTTTTGTATTTGTCACAATATCTTATCCTGTTTTTTGGATTATTACATTTCTTAAGTCATCTGGTATCATACATTTTATTTGAGTGTGGATCCTTTCAAGTTGGAAAAGAGAAGTTCCGTGTTGCATGGCTTCTTGTGATAAATCGCAAGAGTGCAGAAGTTCCTATGATCGATGTCTACATGGTGTGGTAGCTATTGTAGATGGATCAGATAGCTGTTTATTTTCACAGTTCATCGATGGACGATTGAGTCTCACTATTGAGCTGAGTTGTTAACTACTTACATCTAACAACCATCGTTAATTTGTTTGTGCTGCAGGGATACTCTGGAAGTGATCTTCATGGTGTGACTGCCTAA

mRNA sequence

ATGGGTGAACTTAATTGTGCCAAGCTTGGAATGGACCGATTAAAAACCCATCTGGACCAGAAAGTAGCCGGCCCAATGACTAACTCTTGCCCAGTTGGCCTCCCCTCGGGGACCAAGTCGCAAGGATTCCCGCCAGTCCAAATGGGACAAGTGGGAAACCGATTTTATGGACCGCCTGTTCTTCGAATGATTGGGCAAATCACCGTTGTCGATGGGAGAACCTCTAATTCTCTCGCTTATAGTTTCGCTATCGTCGCTGATTCCGATTTTGCTGACTTACGGTCCCGGGGACGTGGTTCCGACCAGCAAGATAGGACTTCGACACCAGTCTGGGACATCATGATTGGTCGATATTCTCCAATTTTTGGCCTCAATCGCGAGGGATACTCTGGAAGTGATCTTCATGGTGTGACTGCCTAA

Coding sequence (CDS)

ATGGGTGAACTTAATTGTGCCAAGCTTGGAATGGACCGATTAAAAACCCATCTGGACCAGAAAGTAGCCGGCCCAATGACTAACTCTTGCCCAGTTGGCCTCCCCTCGGGGACCAAGTCGCAAGGATTCCCGCCAGTCCAAATGGGACAAGTGGGAAACCGATTTTATGGACCGCCTGTTCTTCGAATGATTGGGCAAATCACCGTTGTCGATGGGAGAACCTCTAATTCTCTCGCTTATAGTTTCGCTATCGTCGCTGATTCCGATTTTGCTGACTTACGGTCCCGGGGACGTGGTTCCGACCAGCAAGATAGGACTTCGACACCAGTCTGGGACATCATGATTGGTCGATATTCTCCAATTTTTGGCCTCAATCGCGAGGGATACTCTGGAAGTGATCTTCATGGTGTGACTGCCTAA

Protein sequence

MGELNCAKLGMDRLKTHLDQKVAGPMTNSCPVGLPSGTKSQGFPPVQMGQVGNRFYGPPVLRMIGQITVVDGRTSNSLAYSFAIVADSDFADLRSRGRGSDQQDRTSTPVWDIMIGRYSPIFGLNREGYSGSDLHGVTA

Homology

[Close]

BLAST of CmaCh14G000200 vs. ExPASy TrEMBL
Match: A0A6J1F3D3 (uncharacterized protein LOC111441772 OS=Cucurbita moschata OX=3662 GN=LOC111441772 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.4e-32
Identity = 85/145 (58.62%), Postives = 96/145 (66.21%), Query Frame = 0


Query: 1   MGELNCAKLGMDRLKTHLDQKVAGPMTNSCPVGLPSGTKSQGFPPVQMGQVGNRFYGPPV 60
           MGELN AKLGM R+KTHLD KVAGP+TNS P        + G    ++    N   G P+
Sbjct: 1   MGELNRAKLGMVRIKTHLDPKVAGPITNSRP--------ALGDQVARIPATPNGTSGKPI 60

Query: 61  LRMI------GQITVVDGRTSNSLAYSFAIVADSDFADLRSRGRGSDQQDRTSTPVWDIM 120
           L           ITVVDG TSNSLAYSFAIVADSD          SD+QDRT+T VWDI+
Sbjct: 61  LWTASSSNDWANITVVDGTTSNSLAYSFAIVADSD---------RSDEQDRTATTVWDIV 120

Query: 121 IGRYSPIFGLNREGYSGSDLHGVTA 140
           IGR+SPI G+NREGYSGSDLHGVTA
Sbjct: 121 IGRHSPISGVNREGYSGSDLHGVTA 128

[Close]

BLAST of CmaCh14G000200 vs. NCBI nr
Match: XP_023528643.1 (uncharacterized protein LOC111791501 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-32
Identity = 76/92 (82.61%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 48  MGQVGNRFYGPPVLRMIGQITVVDGRTSNSLAYSFAIVADSDFADLRSRGRGSDQQDRTS 107
           MGQVGNRFYG PVLRMIGQITVVDGRTSNSLAYSFAIVADSD          SD+QDRTS
Sbjct: 1   MGQVGNRFYGAPVLRMIGQITVVDGRTSNSLAYSFAIVADSD---------RSDEQDRTS 60

Query: 108 TPVWDIMIGRYSPIFGLNREGYSGSDLHGVTA 140
           T VWDIMIGR+SPIFG+NREGYS SDLHGVTA
Sbjct: 61  TTVWDIMIGRHSPIFGVNREGYSWSDLHGVTA 83

[Close]

BLAST of CmaCh14G000200 vs. NCBI nr
Match: XP_023528642.1 (uncharacterized protein LOC111791501 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-32
Identity = 76/92 (82.61%), Postives = 79/92 (85.87%), Query Frame = 0


Query: 48  MGQVGNRFYGPPVLRMIGQITVVDGRTSNSLAYSFAIVADSDFADLRSRGRGSDQQDRTS 107
           MGQVGNRFYG PVLRMIGQITVVDGRTSNSLAYSFAIVADSD          SD+QDRTS
Sbjct: 1   MGQVGNRFYGAPVLRMIGQITVVDGRTSNSLAYSFAIVADSD---------RSDEQDRTS 60

Query: 108 TPVWDIMIGRYSPIFGLNREGYSGSDLHGVTA 140
           T VWDIMIGR+SPIFG+NREGYS SDLHGVTA
Sbjct: 61  TTVWDIMIGRHSPIFGVNREGYSWSDLHGVTA 83

[Close]

BLAST of CmaCh14G000200 vs. NCBI nr
Match: XP_022934637.1 (uncharacterized protein LOC111441772 [Cucurbita moschata] >KAG6580434.1 hypothetical protein SDJN03_20436, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017190.1 hypothetical protein SDJN02_19052, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-31
Identity = 85/145 (58.62%), Postives = 96/145 (66.21%), Query Frame = 0


Query: 1   MGELNCAKLGMDRLKTHLDQKVAGPMTNSCPVGLPSGTKSQGFPPVQMGQVGNRFYGPPV 60
           MGELN AKLGM R+KTHLD KVAGP+TNS P        + G    ++    N   G P+
Sbjct: 1   MGELNRAKLGMVRIKTHLDPKVAGPITNSRP--------ALGDQVARIPATPNGTSGKPI 60

Query: 61  LRMI------GQITVVDGRTSNSLAYSFAIVADSDFADLRSRGRGSDQQDRTSTPVWDIM 120
           L           ITVVDG TSNSLAYSFAIVADSD          SD+QDRT+T VWDI+
Sbjct: 61  LWTASSSNDWANITVVDGTTSNSLAYSFAIVADSD---------RSDEQDRTATTVWDIV 120

Query: 121 IGRYSPIFGLNREGYSGSDLHGVTA 140
           IGR+SPI G+NREGYSGSDLHGVTA
Sbjct: 121 IGRHSPISGVNREGYSGSDLHGVTA 128

The following BLAST results are available for this feature:

BLAST of CmaCh14G000200 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh14G000200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F3D3	5.4e-32	58.62	uncharacterized protein LOC111441772 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]

BLAST of CmaCh14G000200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528643.1	1.7e-32	82.61	uncharacterized protein LOC111791501 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023528642.1	1.7e-32	82.61	uncharacterized protein LOC111791501 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022934637.1	1.1e-31	58.62	uncharacterized protein LOC111441772 [Cucurbita moschata] >KAG6580434.1 hypothet...	[more]

BLAST of CmaCh14G000200 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G000200.1	CmaCh14G000200.1	mRNA