CmaCh13G011340 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G011340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	CLAVATA3/ESR (CLE)-related protein 45
Location	Cma_Chr13: 8396598 .. 8398069 (-)
RNA-Seq Expression	CmaCh13G011340
Synteny	CmaCh13G011340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAATCCAGAGAATTGGGTTGCTTTGTTCATAAGGTTCTTCCTGTTAACTATTAATATATCATTACTAGTGCATGATCTACTTGTTTAAGTTGGCAAGATATTGGATTGCAAGATATTGGATTTCAACACACAGCTGTCTCATGGCCCTCTAAATATATATTATAATACGGAAGAAGAAATGCAGGCTTTTCTTAGTTAATGTTACAAAATGTGTCTCAGAACGCACTTCAGCTAACTTGCATGATCTTTAATGAAAGGAACTTATTCTTAGGCAGGCTTGAACAAAAAAAAGTAGGCTGTGGAAGCTGAAGGCATACGTAAGCTAAGTTGATGGATGATTGGGAGAGGAGGGAGGGTGATTCAAAGATGGTCGCTCTTCATAGGTTTTAAAGGGAGAAAATAAAGGAGTTGGGCCTGAGTGGAGAGCTGGGCCTGAGTAGGCTTTTACGGTTTAGTCTATGTAGTAAACATTATCATAATCATGTGAGAATAAAAGTATAAAAGCTTGCTCTTCTTTTTCCTTTCTAGTGGAAGCTCTCTGTTCCCCTCTCTGGTCTTTTATTTGCTTCATGGCTCTGTCTCTCCCCTTCTCTCTCTCTCTTGCAGGCCAAAAAGAGATATTTTACATTGGAGATATCTTTTTTTATTCTCACATGATTATGATAATGTTTACTACATAGACTAAACCGTAAAAGCACTTATCATGTGTTATTTATGGTCGGGTGACATGGAACGACAGCTAACTGAGGCCAGTCTTGGTCTGGTAAAAAAGGGCAATCCCAAGATTGGAACAGGATGTAAGGAACTAACGAAATGGACAGCTCAAGGAAAAATATCCGTAGTCCCTGCCTTCTCAAGGATATTGTTCCATTCAACCTTTTCTTTTCTTTTCCCCTTTTAAATTCAAACCTGTCAAAGTCCTCTTAAAACACCTTCCTATTGCTTCTTTTGCAGGCTTATCATAAGATGAATCTTAAGATTTCCCTACAAGCTATGGACCCCAATTATGTCTTTTGCTTTTCGGCCGTCCTTTTCCTTTAAAGATGAAGCTCTGGCTTCTTCATACAACAATGAGCCATCCTAACCTTTGTCTCTGCATTTATCACACACACATCCTTCTCCTCCCCATCCCCTCCTCACTGAACACAGATACTTCCACCCTTCTAATTTCGAGTATAAATGGGGTTTTTGGTTCATAGGGTGCCCATGCTACTACTCTGTGTTTGGTTTTTGGTTCTTCAACCAGAAGGAACCAGTGGGCTGAGCAACATCGATCTAGCACTCAGATGGGATAAACTACGTATTCCCATTTTCAATAGCTTCAAGTTTGTGAAGGAGGCATCTGTTGAGGACGATTGGGGGAGAACACTGGCTTTTGCACCAGCACCTTTGACGGGTTTCGATCCAACCCGATTGAATAAAAGAAGGATTCGAAGGGGATCTGATCCCATTCACAACAAATGCTGA

mRNA sequence

ATGGTTAATCCAGAGAATTGGGTTGCTTTGTTCATAAGGGTGCCCATGCTACTACTCTGTGTTTGGTTTTTGGTTCTTCAACCAGAAGGAACCAGTGGGCTGAGCAACATCGATCTAGCACTCAGATGGGATAAACTACGTATTCCCATTTTCAATAGCTTCAAGTTTGTGAAGGAGGCATCTGTTGAGGACGATTGGGGGAGAACACTGGCTTTTGCACCAGCACCTTTGACGGGTTTCGATCCAACCCGATTGAATAAAAGAAGGATTCGAAGGGGATCTGATCCCATTCACAACAAATGCTGA

Coding sequence (CDS)

ATGGTTAATCCAGAGAATTGGGTTGCTTTGTTCATAAGGGTGCCCATGCTACTACTCTGTGTTTGGTTTTTGGTTCTTCAACCAGAAGGAACCAGTGGGCTGAGCAACATCGATCTAGCACTCAGATGGGATAAACTACGTATTCCCATTTTCAATAGCTTCAAGTTTGTGAAGGAGGCATCTGTTGAGGACGATTGGGGGAGAACACTGGCTTTTGCACCAGCACCTTTGACGGGTTTCGATCCAACCCGATTGAATAAAAGAAGGATTCGAAGGGGATCTGATCCCATTCACAACAAATGCTGA

Protein sequence

MVNPENWVALFIRVPMLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRTLAFAPAPLTGFDPTRLNKRRIRRGSDPIHNKC

Homology

[Close]

BLAST of CmaCh13G011340 vs. ExPASy TrEMBL
Match: A0A0A0LQI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033220 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.6e-38
Identity = 76/92 (82.61%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 10  LFIRVPMLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRT 69
           L  RV MLLLC+WFL LQPEGT+GL+NIDLALRWDK  IPIFNSFKFVK+ SVEDDWGR 
Sbjct: 4   LIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDWGRM 63

Query: 70  LAFAPAPLTGFDPTRLNKRRIRRGSDPIHNKC 102
           LAFAPAP TG DPT+LNKRR+RRGSDPIHNKC
Sbjct: 64  LAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95

[Close]

BLAST of CmaCh13G011340 vs. ExPASy TrEMBL
Match: A0A5D3BHX9 (CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00900 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 76/92 (82.61%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 10  LFIRVPMLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRT 69
           L  RV MLLLC+WFL LQPEGT+GL+NIDLALRWDK  IPIF+SFKFVK+ASVEDDWG  
Sbjct: 4   LIHRVAMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFSSFKFVKDASVEDDWGGM 63

Query: 70  LAFAPAPLTGFDPTRLNKRRIRRGSDPIHNKC 102
           LAFAPAP TG DPT+LNKRRIRRGSDPIHNKC
Sbjct: 64  LAFAPAPSTGLDPTQLNKRRIRRGSDPIHNKC 95

[Close]

BLAST of CmaCh13G011340 vs. ExPASy TrEMBL
Match: A0A7J6EHR9 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_026456 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.4e-19
Identity = 48/86 (55.81%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 14  VPMLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRTLAFA 73
           +P+LLLC+ FL LQP+ TS L + DLALRWDK++IP        K  + E D  R L  A
Sbjct: 9   IPLLLLCIGFLALQPQNTSALGSKDLALRWDKVKIPFLGDLHIFKSVAFE-DLQRKLVLA 68

Query: 74  PAPLTGFDPTRLNKRRIRRGSDPIHN 100
           PAP   FDP + NKRR+RRGSDPIHN
Sbjct: 69  PAPSVTFDPNQSNKRRVRRGSDPIHN 93

[Close]

BLAST of CmaCh13G011340 vs. ExPASy TrEMBL
Match: A0A2P6P2N1 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.5e-18
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 16  MLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRTLAFAPA 75
           +LL+C+ FL LQPE  SGL ++DLALRWDK      NS   VK  +VED   + L+ APA
Sbjct: 10  ILLVCIGFLALQPEKVSGLRSMDLALRWDKRHFSFLNSLHVVKAVAVEDLQAK-LSLAPA 69

Query: 76  PLTGFDPTRLNKRRIRRGSDPIHNKC 102
           P   FDP++ NKR +R+GSDPIHN+C
Sbjct: 70  PAMTFDPSQSNKRTVRKGSDPIHNRC 94

[Close]

BLAST of CmaCh13G011340 vs. ExPASy TrEMBL
Match: M5WYZ5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.5e-17
Identity = 47/92 (51.09%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 10  LFIRVPMLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRT 69
           L  R  +L +C+ FL LQPE  SGL ++DLALRWDK  +    S   VK  +VED   + 
Sbjct: 4   LAYRSAVLFVCIGFLALQPEKVSGLRSMDLALRWDKGHMSFLKSLHLVKAVAVEDLQAK- 63

Query: 70  LAFAPAPLTGFDPTRLNKRRIRRGSDPIHNKC 102
           L+ APAP   FDP + NKR++R+GSDPIHN+C
Sbjct: 64  LSLAPAPSMTFDPNQSNKRKVRKGSDPIHNRC 94

[Close]

BLAST of CmaCh13G011340 vs. NCBI nr
Match: KAG6584463.1 (hypothetical protein SDJN03_20395, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184.9 bits (468), Expect = 3.5e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 16  MLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRTLAFAPA 75
           MLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRTLAFAPA
Sbjct: 1   MLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRTLAFAPA 60

Query: 76  PLTGFDPTRLNKRRIRRGSDPIHNKC 102
           PLTGFDPTRLNKRRIRRGSDPIHNKC
Sbjct: 61  PLTGFDPTRLNKRRIRRGSDPIHNKC 86

[Close]

BLAST of CmaCh13G011340 vs. NCBI nr
Match: KGN64003.1 (hypothetical protein Csa_013092 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 3.4e-38
Identity = 76/92 (82.61%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 10  LFIRVPMLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRT 69
           L  RV MLLLC+WFL LQPEGT+GL+NIDLALRWDK  IPIFNSFKFVK+ SVEDDWGR 
Sbjct: 4   LIHRVTMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFNSFKFVKDVSVEDDWGRM 63

Query: 70  LAFAPAPLTGFDPTRLNKRRIRRGSDPIHNKC 102
           LAFAPAP TG DPT+LNKRR+RRGSDPIHNKC
Sbjct: 64  LAFAPAPSTGLDPTQLNKRRVRRGSDPIHNKC 95

[Close]

BLAST of CmaCh13G011340 vs. NCBI nr
Match: KAA0036085.1 (CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYJ98893.1 CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-37
Identity = 76/92 (82.61%), Postives = 82/92 (89.13%), Query Frame = 0


Query: 10  LFIRVPMLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRT 69
           L  RV MLLLC+WFL LQPEGT+GL+NIDLALRWDK  IPIF+SFKFVK+ASVEDDWG  
Sbjct: 4   LIHRVAMLLLCIWFLALQPEGTNGLTNIDLALRWDKAHIPIFSSFKFVKDASVEDDWGGM 63

Query: 70  LAFAPAPLTGFDPTRLNKRRIRRGSDPIHNKC 102
           LAFAPAP TG DPT+LNKRRIRRGSDPIHNKC
Sbjct: 64  LAFAPAPSTGLDPTQLNKRRIRRGSDPIHNKC 95

[Close]

BLAST of CmaCh13G011340 vs. NCBI nr
Match: KAG6607448.1 (E3 ubiquitin-protein ligase MARCHF9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.1 bits (331), Expect = 2.7e-27
Identity = 65/89 (73.03%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 13  RVPMLLLCVWFLVLQPEGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRTLAF 72
           +V  LLLC+  L LQ +GT+GL+NI LALRWDKL IPI NSFK VK     DDW  TLAF
Sbjct: 328 KVANLLLCIGILALQSQGTNGLTNIVLALRWDKLNIPISNSFKLVK-----DDWRGTLAF 387

Query: 73  APAPLTGFDPTRLNKRRIRRGSDPIHNKC 102
           APAP  GFDPTRLNKRRIRRGSDPIHNKC
Sbjct: 388 APAPSMGFDPTRLNKRRIRRGSDPIHNKC 411

[Close]

BLAST of CmaCh13G011340 vs. NCBI nr
Match: KAG7037105.1 (hypothetical protein SDJN02_00726, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 29  EGTSGLSNIDLALRWDKLRIPIFNSFKFVKEASVEDDWGRTLAFAPAPLTGFDPTRLNKR 88
           +GT+GL+NI LALRWDKL IPI NSFK VK     DDW  TLAFAPAP  GFDPTRLNKR
Sbjct: 19  QGTNGLTNIVLALRWDKLNIPISNSFKLVK-----DDWRGTLAFAPAPSMGFDPTRLNKR 78

Query: 89  RIRRGSDPIHNKC 102
           RIRRGSDPIHNKC
Sbjct: 79  RIRRGSDPIHNKC 86

The following BLAST results are available for this feature:

BLAST of CmaCh13G011340 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh13G011340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQI0	1.6e-38	82.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G033220 PE=4 SV=1	[more]
A0A5D3BHX9	1.1e-37	82.61	CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A7J6EHR9	6.4e-19	55.81	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_026456 PE=4 SV=1	[more]
A0A2P6P2N1	5.5e-18	54.65	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0181441 PE=4...	[more]
M5WYZ5	3.5e-17	51.09	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G193600 PE=4 SV=1	[more]

BLAST of CmaCh13G011340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584463.1	3.5e-43	100.00	hypothetical protein SDJN03_20395, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN64003.1	3.4e-38	82.61	hypothetical protein Csa_013092 [Cucumis sativus]	[more]
KAA0036085.1	2.2e-37	82.61	CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYJ98893.1 CLA...	[more]
KAG6607448.1	2.7e-27	73.03	E3 ubiquitin-protein ligase MARCHF9, partial [Cucurbita argyrosperma subsp. soro...	[more]
KAG7037105.1	1.8e-23	78.08	hypothetical protein SDJN02_00726, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh13G011340 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36726:SF5	CLAVATA3/ESR (CLE) GENE FAMILY MEMBER MTCLE11	coord: 10..101
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 10..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G011340.1	CmaCh13G011340.1	mRNA