CmaCh13G010520 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G010520
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Ribonucloprotein
Location	Cma_Chr13: 8000702 .. 8001992 (-)
RNA-Seq Expression	CmaCh13G010520
Synteny	CmaCh13G010520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAAACCCTAGTACCGAAGAAGACAGCAATCTCCGTCGTCGTCACAAATTCCTCTCCGGCAGTTCCATTTTGGATACTCTCATCGGAAGCAATGGGGAGTGATAGTGAGGCAGAGAAGTCGCATAAAAAAGACAAAGAAAAGGAGAAGAAGAAGCTGTCGGCTCTTGCACCAATTGCCAAACCCCTTGCCGGCAAGAAGCTCTGCAAGCTCACCCTCAAGCTTGTTCGCAAAGGTATTCCATCTCTCTTCTCTTAACACCGCATTTTTTCTTCATTTTCCTTGATAGATTTAGTTTTTGTTTTGGATGTGAATACACTCGTCATTGTTCTTTCAGCCGCTGAGCATAAGTGCTTGAAGCGAGGGGTAAAGGAGGTGGTCAAAAGCATAAGGCGTGGTCAGAAAGGGTAATTTCTGCTTTGAATCGATCTAGTGTTTATGCTAAAGATAGAACAATGAACAAGGAAGGAGGAGCGAATGATGGAACATAAATTTAATTCCAATATGATCATTTCTGGATGGATTGAAAGCAAAACAAGGCTTTGGAACATCTATAGTTGTAATGTAGTTCATGAAATTCCTTGTACTGTATGCAGATTGTGTGTAATAGCTGGAAACATATCCCCCATTGATGTGATCACTCATGTTCCAATCTTATGTGAAGAGGCAGATATTCGCTACCTATATGTTCCTTCCAAGGAAGTAAGTTTGCACTCATGTGAAGAGGCTGCTAATATCTAGTTCATTTGTATCATTATAAGTTTTGTCAACCAGAATTTGCCATGATTCTTCGTTTCTTCTGATAATGGTAATGATAATGGCGTGTACGTTCTACAGGATCTCGCCAGTGCAGGTTCGACCAAGAGGCCAACATGTTGTGTACTGGTACAGACCAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAGGCTGATTACGATCAAGTTGTTGCAGAAGTATCAGAATTTACTCTTTTCTAAAGAGTAAAGCTTTGTTTTTTTGTAACTTTTCTCAAGCTTTCTTCTCCAAACTTGGTAGTGTACTCTGTTTTACTCTCAAATTTGTTTGGTCCTACGCCACCTTGTGGGAATTCTTTCAAGGGCAAGGGTGGGTAAATTGTTAGTTCAAACAATATGCTCAAAATTTTTGAAAATAAGTTTGCGAATGAAAGAAGATTTAAAAGCAAGCTTATATAACTATAAGCTTACGGGTGAGAGAATTTAACAACTAGTGTGACTGGTCTAGTCGTGATGTTTGGAATTGTTATACAAAATTATGG

mRNA sequence

CTTAAACCCTAGTACCGAAGAAGACAGCAATCTCCGTCGTCGTCACAAATTCCTCTCCGGCAGTTCCATTTTGGATACTCTCATCGGAAGCAATGGGGAGTGATAGTGAGGCAGAGAAGTCGCATAAAAAAGACAAAGAAAAGGAGAAGAAGAAGCTGTCGGCTCTTGCACCAATTGCCAAACCCCTTGCCGGCAAGAAGCTCTGCAAGCTCACCCTCAAGCTTGTTCGCAAAGCCGCTGAGCATAAGTGCTTGAAGCGAGGGGTAAAGGAGGTGGTCAAAAGCATAAGGCGTGGTCAGAAAGGATTGTGTGTAATAGCTGGAAACATATCCCCCATTGATGTGATCACTCATGTTCCAATCTTATGTGAAGAGGCAGATATTCGCTACCTATATGTTCCTTCCAAGGAAGATCTCGCCAGTGCAGGTTCGACCAAGAGGCCAACATGTTGTGTACTGGTACAGACCAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAGGCTGATTACGATCAAGTTGTTGCAGAAGTATCAGAATTTACTCTTTTCTAAAGAGTAAAGCTTTGTTTTTTTGTAACTTTTCTCAAGCTTTCTTCTCCAAACTTGGTAGTGTACTCTGTTTTACTCTCAAATTTGTTTGGTCCTACGCCACCTTGTGGGAATTCTTTCAAGGGCAAGGGTGGGTAAATTGTTAGTTCAAACAATATGCTCAAAATTTTTGAAAATAAGTTTGCGAATGAAAGAAGATTTAAAAGCAAGCTTATATAACTATAAGCTTACGGGTGAGAGAATTTAACAACTAGTGTGACTGGTCTAGTCGTGATGTTTGGAATTGTTATACAAAATTATGG

Coding sequence (CDS)

ATGGGGAGTGATAGTGAGGCAGAGAAGTCGCATAAAAAAGACAAAGAAAAGGAGAAGAAGAAGCTGTCGGCTCTTGCACCAATTGCCAAACCCCTTGCCGGCAAGAAGCTCTGCAAGCTCACCCTCAAGCTTGTTCGCAAAGCCGCTGAGCATAAGTGCTTGAAGCGAGGGGTAAAGGAGGTGGTCAAAAGCATAAGGCGTGGTCAGAAAGGATTGTGTGTAATAGCTGGAAACATATCCCCCATTGATGTGATCACTCATGTTCCAATCTTATGTGAAGAGGCAGATATTCGCTACCTATATGTTCCTTCCAAGGAAGATCTCGCCAGTGCAGGTTCGACCAAGAGGCCAACATGTTGTGTACTGGTACAGACCAAGCCAAACAAAGGGGAGCTTGGATCAACTGAACAAGAGAAACTCAAGGCTGATTACGATCAAGTTGTTGCAGAAGTATCAGAATTTACTCTTTTCTAA

Protein sequence

MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCCVLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFTLF

Homology

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BLAST of CmaCh13G010520 vs. ExPASy Swiss-Prot
Match: Q9LEY9 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g08180 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-52
Identity = 112/153 (73.20%), Postives = 126/153 (82.35%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60
           MGSD+EAEKS +K+K   KK    LAPIAKPLAGKKL K T KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITH+PILCEEA + Y+YVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSE 154
           VLV  KP KG+L + E  KLK DY+QV  ++ E
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKE 150

[Close]

BLAST of CmaCh13G010520 vs. ExPASy Swiss-Prot
Match: P32495 (H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NHP2 PE=1 SV=2)

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-33
Identity = 75/153 (49.02%), Postives = 111/153 (72.55%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDK--EKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGV 60
           MG D++  K  K+ K  +  + ++ A+ P AKPLA KKL K  LK V+KA++ K +KRGV
Sbjct: 1   MGKDNKEHKESKESKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGV 60

Query: 61  KEVVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPT 120
           KEVVK++R+G+KGL VIAG+ISP DVI+H+P+LCE+  + Y+++PSK+DL +AG+TKRPT
Sbjct: 61  KEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPT 120

Query: 121 CCVLVQTKPNKGELGSTEQEKLKADYDQVVAEV 152
             V +    NK + G  ++E+ K  +++VV EV
Sbjct: 121 SVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEV 153

[Close]

BLAST of CmaCh13G010520 vs. ExPASy Swiss-Prot
Match: Q9P7H0 (H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nhp2 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.0e-29
Identity = 69/151 (45.70%), Postives = 102/151 (67.55%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60
           M  D +  K     +++    L AL PIAKPLA KKL K  +K V+KA++ K + RGVKE
Sbjct: 1   MAKDKKDHKHSGSTEDEYDSYLPALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120
           VVK++R+G+KGL ++AG+ISP+DVI+H+P+LCE+ ++ YLY  SKE L  A +TKRPT C
Sbjct: 61  VVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEV 152
           V++     K ++   E+   K  Y++++ EV
Sbjct: 121 VMIVPGGKKKDMSKVEE--YKESYEEIIKEV 149

[Close]

BLAST of CmaCh13G010520 vs. ExPASy Swiss-Prot
Match: Q8I7X7 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri OX=7741 PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 5.8e-24
Identity = 60/150 (40.00%), Postives = 101/150 (67.33%), Query Frame = 0


Query: 4   DSEAEKSHKKDKEKEKKKLSA-LAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKEVV 63
           + E    +K+D+E+  + L+  + PIA PLA +KL K   K V+KA++ K +++G+++V 
Sbjct: 15  EHEESGGNKEDRERAYEVLATRVNPIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQ 74

Query: 64  KSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCCVL 123
           K I++G++G+ +IAG+ +PI+V  H+P++CE+A I Y YVP+K+DL  A  +KRPTCCVL
Sbjct: 75  KFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVL 134

Query: 124 VQTKPNKGELGSTEQEKLKADYDQVVAEVS 153
           +  KPN         E  ++ YD+ + +V+
Sbjct: 135 L--KPN---------ESYQSSYDECLTDVT 153

[Close]

BLAST of CmaCh13G010520 vs. ExPASy Swiss-Prot
Match: Q6NTV9 (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus laevis OX=8355 GN=nhp2 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-23
Identity = 64/151 (42.38%), Postives = 93/151 (61.59%), Query Frame = 0


Query: 6   EAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKEVVKSI 65
           E E+  +   +   + LS L P+AKPLAG+KL K   K V+KA + K ++RGVKEV K I
Sbjct: 8   ECEEVPETPSKSYDELLSYLNPVAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFI 67

Query: 66  RRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCCVLVQT 125
            +G+KG+ V+AG+  PI+V  H+P++CE+  I Y YVPSK DL +A  +KRPTC +L+  
Sbjct: 68  NKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI-- 127

Query: 126 KPNKGELGSTEQEKLKADYDQVVAEVSEFTL 157
           KP+         E  +  YD+ + +V    L
Sbjct: 128 KPH---------EDYQEAYDECLEDVQALPL 147

[Close]

BLAST of CmaCh13G010520 vs. ExPASy TrEMBL
Match: A0A6J1KLE9 (Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111495237 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.3e-78
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60
           MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFTLF 158
           VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFTLF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFTLF 157

[Close]

BLAST of CmaCh13G010520 vs. ExPASy TrEMBL
Match: A0A6J1E880 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111431634 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 4.7e-77
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60
           MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT 156
           VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT 155

[Close]

BLAST of CmaCh13G010520 vs. ExPASy TrEMBL
Match: A0A5D3BKS6 (Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001680 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.3e-71
Identity = 145/155 (93.55%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60
           MGSDSEAEKS +KDKEKEKKKL ALAPIAKPLAGKKLCK TLKLVRKAAE+KCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEE+DIRY+YVPSKEDLA+AGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT 156
           VLVQTKPNKGELGSTEQEKLKAD+DQVVAEVSE T
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELT 155

[Close]

BLAST of CmaCh13G010520 vs. ExPASy TrEMBL
Match: A0A1S3C0C8 (Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.3e-71
Identity = 145/155 (93.55%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60
           MGSDSEAEKS +KDKEKEKKKL ALAPIAKPLAGKKLCK TLKLVRKAAE+KCLKRGVKE
Sbjct: 1   MGSDSEAEKSRQKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEE+DIRY+YVPSKEDLA+AGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEESDIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT 156
           VLVQTKPNKGELGSTEQEKLKAD+DQVVAEVSE T
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADFDQVVAEVSELT 155

[Close]

BLAST of CmaCh13G010520 vs. ExPASy TrEMBL
Match: A0A6J1GTK9 (Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.6e-71
Identity = 143/155 (92.26%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60
           MGSDSEAEKSH KDKEKEKKKL ALAPIAKPLAGKKLCK TLKLVRKAAE+KCLKRGVKE
Sbjct: 1   MGSDSEAEKSHLKDKEKEKKKLLALAPIAKPLAGKKLCKRTLKLVRKAAEYKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120
           VVKSIRRGQKG CVIAGNISPIDVITHVPILCEEADIRY+YVPSKEDLA+AGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGFCVIAGNISPIDVITHVPILCEEADIRYVYVPSKEDLANAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT 156
           VL+QTKPNKGELGSTEQEKLKA++DQVV+EVSE T
Sbjct: 121 VLIQTKPNKGELGSTEQEKLKAEFDQVVSEVSELT 155

[Close]

BLAST of CmaCh13G010520 vs. NCBI nr
Match: XP_023000954.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita maxima])

HSP 1 Score: 300.8 bits (769), Expect = 6.8e-78
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60
           MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFTLF 158
           VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFTLF
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFTLF 157

[Close]

BLAST of CmaCh13G010520 vs. NCBI nr
Match: XP_022924099.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata])

HSP 1 Score: 297.0 bits (759), Expect = 9.8e-77
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60
           MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT 156
           VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT 155

[Close]

BLAST of CmaCh13G010520 vs. NCBI nr
Match: XP_023519949.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.3 bits (752), Expect = 6.3e-76
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60
           MGSDSE EKSHKKDKEKEKKKL+ALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE
Sbjct: 1   MGSDSEVEKSHKKDKEKEKKKLAALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT 156
           VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT 155

[Close]

BLAST of CmaCh13G010520 vs. NCBI nr
Match: KAG7019971.1 (H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.3 bits (752), Expect = 6.3e-76
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60
           MGSDSEAEKSHKK KEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHKKGKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT 156
           VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSEFT 155

[Close]

BLAST of CmaCh13G010520 vs. NCBI nr
Match: KAG6584384.1 (H/ACA ribonucleoprotein complex subunit 2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 285.0 bits (728), Expect = 3.8e-73
Identity = 150/153 (98.04%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60
           MGSDSEAEKSHKK KEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE
Sbjct: 1   MGSDSEAEKSHKKGKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSE 154
           VLVQTKPNKGELGSTEQEKLKADYDQVVAE  E
Sbjct: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEPFE 153

[Close]

BLAST of CmaCh13G010520 vs. TAIR 10
Match: AT5G08180.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 207.2 bits (526), Expect = 9.5e-54
Identity = 112/153 (73.20%), Postives = 126/153 (82.35%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60
           MGSD+EAEKS +K+K   KK    LAPIAKPLAGKKL K T KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITH+PILCEEA + Y+YVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSE 154
           VLV  KP KG+L + E  KLK DY+QV  ++ E
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKE 150

[Close]

BLAST of CmaCh13G010520 vs. TAIR 10
Match: AT5G08180.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 207.2 bits (526), Expect = 9.5e-54
Identity = 112/153 (73.20%), Postives = 126/153 (82.35%), Query Frame = 0


Query: 1   MGSDSEAEKSHKKDKEKEKKKLSALAPIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKE 60
           MGSD+EAEKS +K+K   KK    LAPIAKPLAGKKL K T KL++KAA  KCLKRGVKE
Sbjct: 1   MGSDTEAEKSIQKEK---KKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKE 60

Query: 61  VVKSIRRGQKGLCVIAGNISPIDVITHVPILCEEADIRYLYVPSKEDLASAGSTKRPTCC 120
           VVKSIRRGQKGLCVIAGNISPIDVITH+PILCEEA + Y+YVPSKEDLA AG+TKRPTCC
Sbjct: 61  VVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCC 120

Query: 121 VLVQTKPNKGELGSTEQEKLKADYDQVVAEVSE 154
           VLV  KP KG+L + E  KLK DY+QV  ++ E
Sbjct: 121 VLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKE 150

[Close]

BLAST of CmaCh13G010520 vs. TAIR 10
Match: AT4G12600.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 68.2 bits (165), Expect = 6.9e-12
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 86
           P A PLA  +L    L LV++A  +K LK+G  E  K++ RG     V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFIVMAADTEPLEILL 67

Query: 87  HVPILCEEADIRYLYVPSKEDLASAGSTKRP 118
           H+P+L E+ ++ Y++VPSK+ L  A    RP
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACDVTRP 98

[Close]

BLAST of CmaCh13G010520 vs. TAIR 10
Match: AT5G20160.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 68.2 bits (165), Expect = 6.9e-12
Identity = 34/91 (37.36%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 86
           P A PLA  +L    L LV++A  +K LK+G  E  K++ RG     V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITILDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILL 67

Query: 87  HVPILCEEADIRYLYVPSKEDLASAGSTKRP 118
           H+P+L E+ ++ Y++VPSK+ L  A    RP
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACGVTRP 98

[Close]

BLAST of CmaCh13G010520 vs. TAIR 10
Match: AT4G22380.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-11
Identity = 33/91 (36.26%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 27  PIAKPLAGKKLCKLTLKLVRKAAEHKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVIT 86
           P A PLA  +L    + LV++A  +K LK+G  E  K++ RG     V+A +  P++++ 
Sbjct: 8   PKAYPLADSQLSITIMDLVQQATNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILL 67

Query: 87  HVPILCEEADIRYLYVPSKEDLASAGSTKRP 118
           H+P+L E+ ++ Y++VPSK+ L  A    RP
Sbjct: 68  HLPLLAEDKNVPYVFVPSKQALGRACGVTRP 98

The following BLAST results are available for this feature:

BLAST of CmaCh13G010520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LEY9	1.3e-52	73.20	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana O...	[more]
P32495	2.4e-33	49.02	H/ACA ribonucleoprotein complex subunit NHP2 OS=Saccharomyces cerevisiae (strain...	[more]
Q9P7H0	6.0e-29	45.70	H/ACA ribonucleoprotein complex subunit nhp2 OS=Schizosaccharomyces pombe (strai...	[more]
Q8I7X7	5.8e-24	40.00	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri...	[more]
Q6NTV9	1.7e-23	42.38	H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus laevis OX=8355...	[more]

BLAST of CmaCh13G010520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KLE9	3.3e-78	100.00	Ribonucloprotein OS=Cucurbita maxima OX=3661 GN=LOC111495237 PE=3 SV=1	[more]
A0A6J1E880	4.7e-77	100.00	Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111431634 PE=3 SV=1	[more]
A0A5D3BKS6	2.3e-71	93.55	Ribonucloprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001...	[more]
A0A1S3C0C8	2.3e-71	93.55	Ribonucloprotein OS=Cucumis melo OX=3656 GN=LOC103495169 PE=3 SV=1	[more]
A0A6J1GTK9	6.6e-71	92.26	Ribonucloprotein OS=Cucurbita moschata OX=3662 GN=LOC111457314 PE=3 SV=1	[more]

BLAST of CmaCh13G010520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023000954.1	6.8e-78	100.00	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita maxima]	[more]
XP_022924099.1	9.8e-77	100.00	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita moschata]	[more]
XP_023519949.1	6.3e-76	98.71	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita pepo subsp. pe...	[more]
KAG7019971.1	6.3e-76	99.35	H/ACA ribonucleoprotein complex subunit 2-like protein [Cucurbita argyrosperma s...	[more]
KAG6584384.1	3.8e-73	98.04	H/ACA ribonucleoprotein complex subunit 2-like protein, partial [Cucurbita argyr...	[more]

BLAST of CmaCh13G010520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08180.1	9.5e-54	73.20	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G08180.2	9.5e-54	73.20	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G12600.1	6.9e-12	37.36	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT5G20160.1	6.9e-12	37.36	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]
AT4G22380.1	1.2e-11	36.26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002415	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	PRINTS	PR00883	NUCLEARHMG	coord: 40..55 score: 37.5 coord: 101..113 score: 43.08 coord: 57..67 score: 43.64 coord: 27..40 score: 50.0
IPR018492	Ribosomal protein L7Ae/L8/Nhp2 family	PRINTS	PR00881	L7ARS6FAMILY	coord: 73..86 score: 29.87 coord: 54..68 score: 36.97 coord: 99..113 score: 34.85 coord: 89..99 score: 42.98
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 19..153 e-value: 8.7E-48 score: 163.2
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 24..132
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 43..126 e-value: 2.5E-23 score: 81.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR23105:SF146	SUBFAMILY NOT NAMED	coord: 2..155
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 2..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G010520.1	CmaCh13G010520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000469	cleavage involved in rRNA processing
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0031118	rRNA pseudouridine synthesis
biological_process	GO:0031120	snRNA pseudouridine synthesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0034513	box H/ACA snoRNA binding
molecular_function	GO:0003723	RNA binding