CmaCh13G007050 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G007050
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionthioredoxin-like protein CXXS1
LocationCma_Chr13: 6386332 .. 6387561 (+)
RNA-Seq ExpressionCmaCh13G007050
SyntenyCmaCh13G007050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGGTACTCAGATTGACAAGCTTGTGGGTGCCAATCCAGAAGAGATGAGGAAAAGGATAGGCGCATATGTCGAGACCATACATGTTATGGCTGTGGTTTTGGCATCAGATGGAGACAAGTGCTGGCGTGGCTCTTGGTTTTTGTGGTTTATAGTCTCTCAGATCATGTAAATTCAAGTTGCTGAACGGTTCAATGAGATCTACCATCATGTTATCATCCTGGAGTAGTGAAATTTAAGGGAATGGATTCTGGGATTTGGTGTCTTGATGCTTGATTCCCTGTTGTCTTCTTCATATATCATTTCTGGAATACCAGAGCTTTCATTCAACAACATCTTCCATGCCTGCCAAATCAACTCTCTTTCTCACTTTTTACCAGAAAACTTCCACGAAATTGACTGTTGAATCAAGAACTAGCACAAATAAAACATGACTGTTGAATCAAGAACTAGCACAAATAAAACAGACTCGCAATACTTAAACTCGAAAGAAAAAGGAGTGTACCTGCTAAGCTCACCCCTAGTTAATATTGTCTTTTTTGAATCGTTACATATCATCGTCAGCCTCACGGTTCTAAAACGTGTTTACTAGGGAGAAGGTCTACCCCTACTCTGACCAGTGTCTCGCAATGAGAGAACCATGTCGAAGGAACTCGGCAGAGTGACCCCGTAACTTCGGGAGAAGGGGTCAGTAATTAGAGTATCAAAGCCACAACTGATGTGGGACTTCACAATTGGTATAGGCCGAACAGGACTATATCTATGGGTGGTGAGCTTGGGTTATTACAAATGATTTGACAAATATCTACTAATGGTGAGCTTGGAGCTGTTACAAACGGTATTAGAGCCGGACACCGAATGGTGTACCAATGAGGAAGCTGCTCAAACAAGGTGGATTATAAGATCCAAAGTCGGTTGGAGAAGAGAACGAAATATTTATTATAATGGTGTAGAAACTTACCTCGGGTCTGCGTGAGCGAGAGGAGAGAAGTGGATCGTGGCGTTGGGAATTTCAAATCCCAATTCAAATCCCGTCGGATGGTTAAGAATTGAAATGTAGAAAGGGAATGGGGAGTGTGTGGGCCTAAACATGGGAAGCATCACAAAATATTGTAAATCTCTGTGTTTACTTTATTTTGTTTGTTGGAGTGTTAGCGTTAGTGGACCAGTTGCAGTATGCGATTCTTCTTCGATTTTCCCTCCCCACTCTTTCCTCAGATTCCTTTAA

mRNA sequence

ATGTATGGTACTCAGATTGACAAGCTTGTGGGTGCCAATCCAGAAGAGATGAGGAAAAGGATAGGCGCATATGTCGAGACCATACATGTTATGGCTGTGGTTTTGGCATCAGATGGAGACAAGTGCTGGCGTGGCTCTTGGTTTTTGTGGTTTATAGTCTCTCAGATCATCGTTAGTGGACCAGTTGCAGTATGCGATTCTTCTTCGATTTTCCCTCCCCACTCTTTCCTCAGATTCCTTTAA

Coding sequence (CDS)

ATGTATGGTACTCAGATTGACAAGCTTGTGGGTGCCAATCCAGAAGAGATGAGGAAAAGGATAGGCGCATATGTCGAGACCATACATGTTATGGCTGTGGTTTTGGCATCAGATGGAGACAAGTGCTGGCGTGGCTCTTGGTTTTTGTGGTTTATAGTCTCTCAGATCATCGTTAGTGGACCAGTTGCAGTATGCGATTCTTCTTCGATTTTCCCTCCCCACTCTTTCCTCAGATTCCTTTAA

Protein sequence

MYGTQIDKLVGANPEEMRKRIGAYVETIHVMAVVLASDGDKCWRGSWFLWFIVSQIIVSGPVAVCDSSSIFPPHSFLRFL
Homology
[Close]
BLAST of CmaCh13G007050 vs. ExPASy TrEMBL
Match: A0A5A7UTN6 (Thioredoxin-like protein CXXS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G006200 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 3   GTQIDKLVGANPEEMRKRIGAYVETIHV 31
           GTQIDKLVGANPEE+RKRIGAY ET+HV
Sbjct: 95  GTQIDKLVGANPEEIRKRIGAYTETVHV 122

[Close]
BLAST of CmaCh13G007050 vs. ExPASy TrEMBL
Match: A0A1S3B3B5 (thioredoxin-like protein CXXS1 OS=Cucumis melo OX=3656 GN=LOC103485681 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 3   GTQIDKLVGANPEEMRKRIGAYVETIHV 31
           GTQIDKLVGANPEE+RKRIGAY ET+HV
Sbjct: 95  GTQIDKLVGANPEEIRKRIGAYTETVHV 122

[Close]
BLAST of CmaCh13G007050 vs. ExPASy TrEMBL
Match: A0A0A0LUX0 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G065970 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 3   GTQIDKLVGANPEEMRKRIGAYVETIHV 31
           G  IDKLVGANPEE+RKRIGAY ET+HV
Sbjct: 95  GNLIDKLVGANPEEIRKRIGAYTETVHV 122

[Close]
BLAST of CmaCh13G007050 vs. NCBI nr
Match: KAG6584055.1 (hypothetical protein SDJN03_19987, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.5 bits (249), Expect = 6.8e-18
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 6  IDKLVGANPEEMRKRIGAYVETIHVMAVVLASDGDKCWRGSWFLWFIVSQII 58
          IDKLVGANPEEMRKRI AYVETIHVMAVVLASDGDK  RGSWFLWFIVSQI+
Sbjct: 19 IDKLVGANPEEMRKRIDAYVETIHVMAVVLASDGDKFRRGSWFLWFIVSQIM 70

[Close]
BLAST of CmaCh13G007050 vs. NCBI nr
Match: XP_008441601.1 (PREDICTED: thioredoxin-like protein CXXS1 [Cucumis melo] >KAA0056899.1 thioredoxin-like protein CXXS1 [Cucumis melo var. makuwa] >TYJ99402.1 thioredoxin-like protein CXXS1 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 5.1e-05
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 3   GTQIDKLVGANPEEMRKRIGAYVETIHV 31
           GTQIDKLVGANPEE+RKRIGAY ET+HV
Sbjct: 95  GTQIDKLVGANPEEIRKRIGAYTETVHV 122

[Close]
BLAST of CmaCh13G007050 vs. NCBI nr
Match: XP_038895316.1 (thioredoxin-like protein CXXS1 [Benincasa hispida])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 3   GTQIDKLVGANPEEMRKRIGAYVETIHV 31
           GTQIDKLVGANPEE+RKRIGAY E IHV
Sbjct: 96  GTQIDKLVGANPEEIRKRIGAYAEAIHV 123

The following BLAST results are available for this feature:
BLAST of CmaCh13G007050 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh13G007050 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UTN62.5e-0589.29Thioredoxin-like protein CXXS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3B3B52.5e-0589.29thioredoxin-like protein CXXS1 OS=Cucumis melo OX=3656 GN=LOC103485681 PE=4 SV=1[more]
A0A0A0LUX06.1e-0482.14Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G065970... [more]
BLAST of CmaCh13G007050 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6584055.16.8e-1892.31hypothetical protein SDJN03_19987, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_008441601.15.1e-0589.29PREDICTED: thioredoxin-like protein CXXS1 [Cucumis melo] >KAA0056899.1 thioredox... [more]
XP_038895316.11.5e-0489.29thioredoxin-like protein CXXS1 [Benincasa hispida][more]
BLAST of CmaCh13G007050 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G007050.1CmaCh13G007050.1mRNA