CmaCh13G006820 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G006820
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionWound-responsive family protein
LocationCma_Chr13: 6281018 .. 6281254 (-)
RNA-Seq ExpressionCmaCh13G006820
SyntenyCmaCh13G006820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGGCGATGTTGAAGGCGCTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGTAATGGCTGCGAAGGCGGATAAACTTAAGCGGGCCGAGGAGTCTCTGAGAACGGTCATGTATTTGAGCTGTTGGGGGCCTAACTAA

mRNA sequence

ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGGCGATGTTGAAGGCGCTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGTAATGGCTGCGAAGGCGGATAAACTTAAGCGGGCCGAGGAGTCTCTGAGAACGGTCATGTATTTGAGCTGTTGGGGGCCTAACTAA

Coding sequence (CDS)

ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGGCGATGTTGAAGGCGCTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGTAATGGCTGCGAAGGCGGATAAACTTAAGCGGGCCGAGGAGTCTCTGAGAACGGTCATGTATTTGAGCTGTTGGGGGCCTAACTAA

Protein sequence

MSRRFYKGEISGMKDPTAKREAMLKALRDHSGSSSNQGARGFYSGMDSSAVMAAKADKLKRAEESLRTVMYLSCWGPN
Homology
BLAST of CmaCh13G006820 vs. ExPASy TrEMBL
Match: A0A5N6QBJ8 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000343 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.7e-11
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 1  MSRRFYKGEISGMKDPTAKREAMLKALRDHSGSSSNQGARGFYSGMDSSAVMAAKADKLK 60
          MS ++    + GMKD  +K ++ +K+LRD   SSS++ A+ F    DS+A+ AA  +K+K
Sbjct: 1  MSLKYMSRVLQGMKDQASKCDSTVKSLRDSPCSSSSKQAKLFSGAFDSAALKAANNEKIK 60

Query: 61 RAEESLRTVMYLSCWGPN 79
          +AEES RTVMYLSCWGPN
Sbjct: 61 QAEESFRTVMYLSCWGPN 78

BLAST of CmaCh13G006820 vs. ExPASy TrEMBL
Match: A0A1R3H3Y0 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31599 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.0e-11
Identity = 38/67 (56.72%), Postives = 52/67 (77.61%), Query Frame = 0

Query: 12 GMKDPTAKREAMLKALRDHSGSSSNQGARGFYSGMDSSAVMAAKADKLKRAEESLRTVMY 71
          GMKD  +K E+ L++L+D + SSS++ AR F + +DS A  AA  ++L++AEESLRTVMY
Sbjct: 20 GMKDQASKCESNLRSLKDSASSSSSKQARRFSNTVDSGAFKAATNERLRQAEESLRTVMY 79

Query: 72 LSCWGPN 79
          LSCWGPN
Sbjct: 80 LSCWGPN 86

BLAST of CmaCh13G006820 vs. ExPASy TrEMBL
Match: A0A7N2LSL0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.0e-11
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 1  MSRRFYKG---EISGMKDPTAKREAMLKALRDHS-GSSSNQGARGFYSGMDSSAVMAAKA 60
          MSR  Y+     I GMKD  +K ++ + +LRD +  SSS++ AR F +  DS+A  AA +
Sbjct: 1  MSRSLYQSGMRVIQGMKDQASKCDSTVNSLRDSAYSSSSSKQARLFSTACDSAAYKAANS 60

Query: 61 DKLKRAEESLRTVMYLSCWGPN 79
          +K+K+AEESLRTVMYLSCWGPN
Sbjct: 61 EKIKQAEESLRTVMYLSCWGPN 82

BLAST of CmaCh13G006820 vs. ExPASy TrEMBL
Match: B9H210 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G033300 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 6.5e-11
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 0

Query: 10 ISGMKDPTAKRE-AMLKALRDHSGSSSNQGARGFYSGMDSSAVMAAKADKLKRAEESLRT 69
          + GMKD  +K + + +K+LRD + SSS++ AR F   +DSSA M AK +K K+AEESLRT
Sbjct: 18 VQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSAYMNAKNEKFKQAEESLRT 77

Query: 70 VMYLSCWGPN 79
          VM+LSCWGPN
Sbjct: 78 VMFLSCWGPN 87

BLAST of CmaCh13G006820 vs. ExPASy TrEMBL
Match: A0A5N5MZZ3 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_005484 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.5e-11
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 1  MSRRFYKG---EISGMKDPTAKRE-AMLKALRDHSGSSSNQGARGFYSGMDSSAVMAAKA 60
          MSR  Y+     + GMKD  +K + + +K+LRD + SSS++ AR F   +DSS  M A++
Sbjct: 6  MSRVLYQSGMRVVQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSVFMDARS 65

Query: 61 DKLKRAEESLRTVMYLSCWGPN 79
          +K K+AEESLRTVM+LSCWGPN
Sbjct: 66 EKFKQAEESLRTVMFLSCWGPN 87

BLAST of CmaCh13G006820 vs. NCBI nr
Match: KAG7019649.1 (hypothetical protein SDJN02_18612, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.1 bits (383), Expect = 1.9e-33
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0

Query: 1  MSRRFYKGEISGMKDPTAKREAMLKALRDHSGSSSNQGARGFYSGMDSSAVMAAKADKLK 60
          MSRRFYKGEISGMKDPTAKREAMLKA+RDHSGSSSNQGARGFYSGMDSSA MAAKA+KLK
Sbjct: 1  MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK 60

Query: 61 RAEESLRTVMYLSCWGPN 79
          RAEESLRTVMYLSCWGPN
Sbjct: 61 RAEESLRTVMYLSCWGPN 78

BLAST of CmaCh13G006820 vs. NCBI nr
Match: KAG6584036.1 (hypothetical protein SDJN03_19968, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 2.5e-25
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = 0

Query: 1  MSRRFYKGEISGMKDPTAKREAMLKALRDHSGSSSNQGARGFYSGMDSSAVMAAKADKLK 60
          MSRRFYKGEISGMKDPTAKREAMLKA+RDHSGSSSNQGARGFYSGMDSSA MAAKA+KLK
Sbjct: 1  MSRRFYKGEISGMKDPTAKREAMLKAVRDHSGSSSNQGARGFYSGMDSSAAMAAKAEKLK 60

Query: 61 RAEESLR 68
          RAEESLR
Sbjct: 61 RAEESLR 67

BLAST of CmaCh13G006820 vs. NCBI nr
Match: KAG6573231.1 (hypothetical protein SDJN03_27118, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012404.1 hypothetical protein SDJN02_25156, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 89.4 bits (220), Expect = 1.5e-14
Identity = 49/78 (62.82%), Postives = 54/78 (69.23%), Query Frame = 0

Query: 1   MSRRFYKGEISGMKDPTAKREAMLKALRDHSGSSSNQGARGFYSGMDSSAVMAAKADKLK 60
           +S   Y GE  GM D  A+RE   K LRD SGSSS     GF S + S A MAAKA+K+K
Sbjct: 54  LSLPLYGGETGGMNDQRAEREPAAKGLRDPSGSSSQ--TTGFCSAVGSIAAMAAKAEKVK 113

Query: 61  RAEESLRTVMYLSCWGPN 79
           RAEESLRTVMYLSCWGPN
Sbjct: 114 RAEESLRTVMYLSCWGPN 129

BLAST of CmaCh13G006820 vs. NCBI nr
Match: KAE7995563.1 (hypothetical protein FH972_000343 [Carpinus fangiana])

HSP 1 Score: 78.2 bits (191), Expect = 3.5e-11
Identity = 39/78 (50.00%), Postives = 55/78 (70.51%), Query Frame = 0

Query: 1  MSRRFYKGEISGMKDPTAKREAMLKALRDHSGSSSNQGARGFYSGMDSSAVMAAKADKLK 60
          MS ++    + GMKD  +K ++ +K+LRD   SSS++ A+ F    DS+A+ AA  +K+K
Sbjct: 1  MSLKYMSRVLQGMKDQASKCDSTVKSLRDSPCSSSSKQAKLFSGAFDSAALKAANNEKIK 60

Query: 61 RAEESLRTVMYLSCWGPN 79
          +AEES RTVMYLSCWGPN
Sbjct: 61 QAEESFRTVMYLSCWGPN 78

BLAST of CmaCh13G006820 vs. NCBI nr
Match: XP_028805355.1 (uncharacterized protein LOC114760257 [Prosopis alba])

HSP 1 Score: 76.6 bits (187), Expect = 1.0e-10
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 0

Query: 12 GMKDPTAK-REAMLKALRDHSGSSSNQGARGFYSGMDSSAVMAAKADKLKRAEESLRTVM 71
          GMKD  +K  ++ +K+LRD + SSS++  R F +  DS AV A+ +DKLK+AEESLRT+M
Sbjct: 20 GMKDQGSKCGDSAIKSLRDSASSSSSKQVRRFSNAFDSPAVKASNSDKLKQAEESLRTIM 79

Query: 72 YLSCWGPN 79
          YLSCWGPN
Sbjct: 80 YLSCWGPN 87

BLAST of CmaCh13G006820 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-07
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 0

Query: 8  GEISGMKDP--TAKREAMLKALRDH---SGSSSNQGARGFYSGMDSSAVMAAKADKLKRA 67
          G +  +KD     +   +L+++  H   +  S +QG R   S + ++   + +++K K+A
Sbjct: 15 GAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSSGESEKAKKA 74

Query: 68 EESLRTVMYLSCWGPN 79
          EESLRTVMYLSCWGPN
Sbjct: 75 EESLRTVMYLSCWGPN 90

BLAST of CmaCh13G006820 vs. TAIR 10
Match: AT4G05070.1 (Wound-responsive family protein )

HSP 1 Score: 50.1 bits (118), Expect = 9.6e-07
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 0

Query: 17 TAKREAMLKALRDHSGSSSNQGARGFYSGMDSSAVMAAKADKLKRAEESLRTVMYLSCWG 76
          T  R A+ +++     +SS+   R     ++SS   AA +++L++AEESLRTVM+LSCWG
Sbjct: 26 TTLRSAVKESVSSPQSASSSSSVRRLKGDLESSRFGAAASERLRQAEESLRTVMFLSCWG 85

BLAST of CmaCh13G006820 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.5e-04
Identity = 26/67 (38.81%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 24 LKALRDHSG--------SSSNQGARGFYSGMDSSAVMAAKA----DKLKRAEESLRTVMY 79
          ++AL+D  G         S+NQ  R     +  +  +++ +    +K K+AEESLRTVMY
Sbjct: 17 VEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDYTNKTKQAEESLRTVMY 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5N6QBJ81.7e-1150.00Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_000343 PE=4 SV=1[more]
A0A1R3H3Y05.0e-1156.72Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_31599 PE=4 SV=1[more]
A0A7N2LSL05.0e-1152.44Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
B9H2106.5e-1157.14Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G033300 PE=4 ... [more]
A0A5N5MZZ38.5e-1151.22Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_005484 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG7019649.11.9e-3396.15hypothetical protein SDJN02_18612, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6584036.12.5e-2595.52hypothetical protein SDJN03_19968, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6573231.11.5e-1462.82hypothetical protein SDJN03_27118, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE7995563.13.5e-1150.00hypothetical protein FH972_000343 [Carpinus fangiana][more]
XP_028805355.11.0e-1057.35uncharacterized protein LOC114760257 [Prosopis alba][more]
Match NameE-valueIdentityDescription
AT4G10270.11.1e-0738.16Wound-responsive family protein [more]
AT4G05070.19.6e-0741.67Wound-responsive family protein [more]
AT4G10265.11.5e-0438.81Wound-responsive family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 12..77
e-value: 3.7E-12
score: 47.1
IPR022251Protein of unknown function wound-inducedPANTHERPTHR33090DUF3774 DOMAIN PROTEIN-RELATEDcoord: 1..78
NoneNo IPR availablePANTHERPTHR33090:SF41WOUND-RESPONSIVE FAMILY PROTEINcoord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G006820.1CmaCh13G006820.1mRNA