CmaCh13G006140 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G006140
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr13: 5966085 .. 5966384 (-)
RNA-Seq ExpressionCmaCh13G006140
SyntenyCmaCh13G006140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCATCTGGGATTCTGCGTTTTGATCTTCATCCTACTCGTTTCACCTTCAACACTCCAAGCTCGTCACTTGATTGGTCCAAAGAACTCAAACTTCATAATCCCAATATCGCCCGTCACCAGAATCGCCAGATTCTTCGCCATTCCGATCAACCCGAGTCAGAGCCCAACGAAATCAAACCCAGCACTGACCCGAATGGCCACCGAAATCTCTCGACTGGGGAATGAACACGCCAAGAAATTTGGCTACAAACCCACCCGCCTCAGCCCCGGAGGCCCCGACCCCCACCATCATTAG

mRNA sequence

ATGGCCCATCTGGGATTCTGCGTTTTGATCTTCATCCTACTCGTTTCACCTTCAACACTCCAAGCTCGTCACTTGATTGGTCCAAAGAACTCAAACTTCATAATCCCAATATCGCCCGTCACCAGAATCGCCAGATTCTTCGCCATTCCGATCAACCCGAGTCAGAGCCCAACGAAATCAAACCCAGCACTGACCCGAATGGCCACCGAAATCTCTCGACTGGGGAATGAACACGCCAAGAAATTTGGCTACAAACCCACCCGCCTCAGCCCCGGAGGCCCCGACCCCCACCATCATTAG

Coding sequence (CDS)

ATGGCCCATCTGGGATTCTGCGTTTTGATCTTCATCCTACTCGTTTCACCTTCAACACTCCAAGCTCGTCACTTGATTGGTCCAAAGAACTCAAACTTCATAATCCCAATATCGCCCGTCACCAGAATCGCCAGATTCTTCGCCATTCCGATCAACCCGAGTCAGAGCCCAACGAAATCAAACCCAGCACTGACCCGAATGGCCACCGAAATCTCTCGACTGGGGAATGAACACGCCAAGAAATTTGGCTACAAACCCACCCGCCTCAGCCCCGGAGGCCCCGACCCCCACCATCATTAG

Protein sequence

MAHLGFCVLIFILLVSPSTLQARHLIGPKNSNFIIPISPVTRIARFFAIPINPSQSPTKSNPALTRMATEISRLGNEHAKKFGYKPTRLSPGGPDPHHH
Homology
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BLAST of CmaCh13G006140 vs. NCBI nr
Match: KAG6583968.1 (hypothetical protein SDJN03_19900, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 188.0 bits (476), Expect = 4.0e-44
Identity = 93/99 (93.94%), Postives = 94/99 (94.95%), Query Frame = 0 

Query: 1   MAHLGFCVLIFILLVSPSTLQARHLIGPKNSNFIIPISPVTRIARFFAIPINPSQSPTKS 60
           MAHLGFCVLIFILLVSPSTLQAR LIGPKNS F IPIS +TRIARFFAIPINPSQS TKS
Sbjct: 1   MAHLGFCVLIFILLVSPSTLQARTLIGPKNSKFTIPISHITRIARFFAIPINPSQSSTKS 60

Query: 61  NPALTRMATEISRLGNEHAKKFGYKPTRLSPGGPDPHHH 100
           NPALTRMATEISRLGNEHAKKFGYKPTRLSPGGPDPHHH
Sbjct: 61  NPALTRMATEISRLGNEHAKKFGYKPTRLSPGGPDPHHH 99

The following BLAST results are available for this feature:
BLAST of CmaCh13G006140 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh13G006140 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh13G006140 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6583968.14.0e-4493.94hypothetical protein SDJN03_19900, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh13G006140 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G006140.1CmaCh13G006140.1mRNA