CmaCh12G010380 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G010380
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	zinc finger matrin-type protein 2
Location	Cma_Chr12: 8233810 .. 8236904 (-)
RNA-Seq Expression	CmaCh12G010380
Synteny	CmaCh12G010380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACTCGCGACCTCTCGCACCCGAAGCGAGAATCATACCACTAGACCAAACGCCCTGTTTGTCTTCTTCTCCTAATTATTCAATGATAACCTATAATTTATGGTCTTGTTTTCTAATGTTCTTCTGGCTTTTGAATCTATTCATGTTAGGTTATGTTTGCGTATTGATATTCTCTCGGATTTGTTTTTCTGAAGAATTCCATCTGAGTTTCGATTGTTAGGGCAAGTTTTGTTTTCGACAGCGATGGCTCATACCAGCAATACTGTAAGTTCTAATCTCCCGTTTCGTTTTTAAACCCTAGCTTACTGATATTACGTCCTTGTTATAATCTGTAAGTGGTTCTGGTTCTGGTTCTGGTTTTGATTCTGCCCCATTTAGTTGATGAAATGAGCAAAATAATTAAAAATGATCGATAACCTTTGCTCTTTCTTAATCGCATTACGATTAGGCTTTTTTGGAACTAATTTTGTACAATTCCTTGTATGTAGGCAGCTGGAGTTGATAACACGTTTAGAAGAAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGTGACCGTGAAAAACAGGTTACGGCTTTTGGAATTTCTCGTTCTCATCATGTTTTGTTAATTTCTCTGAGTGTCTCTCAAATGTTGCTGATTCTGATGTTCTTAACTTGTATTTCAGGAGGCTGAGAGGGTTAAGTCTAAATGTAAGTGGTTCCTTTCTTGCTGTGTTTGGATTTTGTTGAGTATTTGTGCTCTTGTTTATCTGTAATCATCGATGCTATAATCTGCTGACTTGGTTGATGTCTCTGAAGGATTTAATTTGCTATCTTTGAACAGTGAAAGGTCCACCAGTGCAAAGAAAACCACTGAAACATAGAGATTATGAGGTAGACCTCAATTCTCGATTGGGAAAAACCCAGGTTAGTCATGCCATTCCTTTTTGGTTCCTCGAACATTATCTCGAATCAATGTGTATTTTGGTAATATTTCTTGGAATTGTGGCTTTCTTTCTGTGGTATTAGCTTAGGCTGTTTTGAGTTATTAATAGTTTGTTTTCCATCCTGTTCTGTCATTAGGGCATAAACTTTCAAAATCTTTAGTATGTTAACTTTTATGTCATCATATTTCGGCTCATGGCCTCTGTGTTGATCTGGCTGTAGGTTCAGGTTCTATGTGGCATCAGGATTTGATATATAAGACTAATTTTCATATTACCTGCACTGTGCATAGTTAACTGGCCCGTGGCGTCTGTGTTCATCATATTTTGGCCTGTGGTCTCTGTGTTGATCTGGCTTTAAGTTCAGGTTCTATGTGGCATCATGATTTGATATAGAAGACTAATTTTCATATTATCTGCACTGTGCATAGTTAACTGGCTGACATGTGAGAATTCCTATGTAAGGCATTTATATGATGATGGGAGTGACTATTTTGAATATTCACTTTATAGTTAATCATTCGTGTTACCGTTGAATAGTGATGGAAAAACATTTAAAAGGTTATATTCATTTGGCCTGTTTGGATGAACTCACCTTTTAATTGGGGAATCACTCTCAAATAAAGGCAATCAACTAGTACCTCATTATGATACAAAATTTAATCTTAGATTTCAGTTTCTCTGCTCAATATCATATGATTCTGACCTGCTTCATTCTGGGATTGATTGTTAATTCATCCTCGTGCAGGTTGTCACTCCAGTCGCACCTCTAAGCCAGCAGGTATCACGCTTAACTATCGTGTTAAAGTCAAATCTTGAAATACATTAGAGAAATTTCAAATTTAAAGTAGTGTATAACTTATTGACTTCAAAAGAAAAGCTGGGAGGAAAAAATGAAGGTGGCTTTGCTTGTCTGGTTTTTGTTAATCTGCTCTTGAAATGAAGTAGAATTTTCACTTAATACCTTATTCTTTTTTTGATTAACGAGTTCTTTTTCAGGCTGGATACTACTGTTCCGTTTGTGAATGCGTGGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACGTATGGACCTATCGACTCAATTTTAACCAATCATGTTCGTGAAATGTCAAGGTCTTATTATCTTGTTTTTTCTATTGACTTTATGTTGTAGATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGAGCATCTCTTGAACAGGTACCACTACAAATACTTAGAAAGATGGAATTACTTGTCCTGTTCATTATTGCAGTAGATATTTGCGAAATCTCGATGTCGGAGGGGCTAAGTAGCTTTATGTGAAATAGGTACAGGAGCGATTTGAAGTTCTTAAAAAGAGAAAAACGCCCGGAAGCTTCACAGAGCAAGGTAAAGCCTAAGAATTTGAGTTAGTTTTCATGTCGTGCTTTTGACTGCAAAAATATACTAGCATTGGATATCATCACTATTCTTTGTTTCAATTTTCAGGATTATGATTTGTTTACTGATGAAAACCGACGTTACGTTTTGTTTTTATTTAGATCTCGAAGAGCGTATAATAAAACAGCAAGAAGAAGAAGAACAACGGAAGCGCGAGCGCCGAGAAAGGAAGAAAGAAAGGAAGGTTAGTACTATGATCTCACCGTTTTAAAAGCACATTCGATTTCCATCAGGTAAAGAGAGGATCACATTTTACACTTAAATTTTCCTCCCTGATTGTAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTCGATCCCGACGTTGCAGCAATGATGGGGTTCGGGGGTTTCCGTTCATCCAAGAAGTGACAATTACCGATTCGTTTGCCCTTGTGATCCTTCTTGTGGAGTTATTTAATTTGAAGTGATGTGCAAAGGAAGGTCTAAACGTGGGCTCTTCCTTCCCAGCCTCTTGAACTGTATGTTGTATGTTTTGAGAGTTTTCAGTATGAACAATGAAGAATTGGACTGAGCTGAGCTTAACGACCTTACTTAGAACAACATTTGTTCTACACTGTACACTTACTATATCCTTTTGTTTTATAGAACAGCTTAACATATCTTTTTCTTCATGTCTCAGGATGAATTTGGTCAACTTTGAGATTAAATTGATCCCGAAAAGGTAAGGAATTACGTGTATCGGTTAAGTTTTATTAGGACG

mRNA sequence

GAACTCGCGACCTCTCGCACCCGAAGCGAGAATCATACCACTAGACCAAACGCCCTGTTATGTTTGCGTATTGATATTCTCTCGGATTTGTTTTTCTGAAGAATTCCATCTGAGTTTCGATTGTTAGGGCAAGTTTTGTTTTCGACAGCGATGGCTCATACCAGCAATACTGCAGCTGGAGTTGATAACACGTTTAGAAGAAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGTGACCGTGAAAAACAGGAGGCTGAGAGGGTTAAGTCTAAATTGAAAGGTCCACCAGTGCAAAGAAAACCACTGAAACATAGAGATTATGAGGTAGACCTCAATTCTCGATTGGGAAAAACCCAGGTTGTCACTCCAGTCGCACCTCTAAGCCAGCAGGCTGGATACTACTGTTCCGTTTGTGAATGCGTGGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGAGCATCTCTTGAACAGGTACAGGAGCGATTTGAAGTTCTTAAAAAGAGAAAAACGCCCGGAAGCTTCACAGAGCAAGATCTCGAAGAGCGTATAATAAAACAGCAAGAAGAAGAAGAACAACGGAAGCGCGAGCGCCGAGAAAGGAAGAAAGAAAGGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTCGATCCCGACGTTGCAGCAATGATGGGGTTCGGGGGTTTCCGTTCATCCAAGAAGTGACAATTACCGATTCGTTTGCCCTTGTGATCCTTCTTGTGGAGTTATTTAATTTGAAGTGATGTGCAAAGGAAGGTCTAAACGTGGGCTCTTCCTTCCCAGCCTCTTGAACTGTATGTTGTATGTTTTGAGAGTTTTCAGTATGAACAATGAAGAATTGGACTGAGCTGAGCTTAACGACCTTACTTAGAACAACATTTGTTCTACACTGTACACTTACTATATCCTTTTGTTTTATAGAACAGCTTAACATATCTTTTTCTTCATGTCTCAGGATGAATTTGGTCAACTTTGAGATTAAATTGATCCCGAAAAGGTAAGGAATTACGTGTATCGGTTAAGTTTTATTAGGACG

Coding sequence (CDS)

ATGGCTCATACCAGCAATACTGCAGCTGGAGTTGATAACACGTTTAGAAGAAAATTTGATCGAGAGGAGTATTTGGAACGAGCTCGTGACCGTGAAAAACAGGAGGCTGAGAGGGTTAAGTCTAAATTGAAAGGTCCACCAGTGCAAAGAAAACCACTGAAACATAGAGATTATGAGGTAGACCTCAATTCTCGATTGGGAAAAACCCAGGTTGTCACTCCAGTCGCACCTCTAAGCCAGCAGGCTGGATACTACTGTTCCGTTTGTGAATGCGTGGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGAGCATCTCTTGAACAGGTACAGGAGCGATTTGAAGTTCTTAAAAAGAGAAAAACGCCCGGAAGCTTCACAGAGCAAGATCTCGAAGAGCGTATAATAAAACAGCAAGAAGAAGAAGAACAACGGAAGCGCGAGCGCCGAGAAAGGAAGAAAGAAAGGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTCGATCCCGACGTTGCAGCAATGATGGGGTTCGGGGGTTTCCGTTCATCCAAGAAGTGA

Protein sequence

MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEVDLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK

Homology

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BLAST of CmaCh12G010380 vs. ExPASy Swiss-Prot
Match: Q96NC0 (Zinc finger matrin-type protein 2 OS=Homo sapiens OX=9606 GN=ZMAT2 PE=1 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.5e-40
Identity = 99/188 (52.66%), Postives = 137/188 (72.87%), Query Frame = 0


Query: 15  FRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEVDLNSRLGKTQVVTP 74
           FRRK+D++EY + A  R  +E E+   K    PV+R+ L+HRDY+VDL S+LGKT V+T 
Sbjct: 12  FRRKWDKDEYEKLAEKRLTEEREKKDGK-PVQPVKRELLRHRDYKVDLESKLGKTIVITK 71

Query: 75  VAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLK 134
             P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++L+QV++RFEV  
Sbjct: 72  TTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEV-N 131

Query: 135 KRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEEEPEVDPDVAAMMGF 194
           K+K      + D EER+ + +EEEE+ K  ++E++KE+K+    +   E D ++AA+MGF
Sbjct: 132 KKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEEDDEMAAVMGF 191

Query: 195 GGFRSSKK 203
            GF S+KK
Sbjct: 192 SGFGSTKK 197

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BLAST of CmaCh12G010380 vs. ExPASy Swiss-Prot
Match: Q9CPW7 (Zinc finger matrin-type protein 2 OS=Mus musculus OX=10090 GN=Zmat2 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.5e-40
Identity = 99/188 (52.66%), Postives = 137/188 (72.87%), Query Frame = 0


Query: 15  FRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEVDLNSRLGKTQVVTP 74
           FRRK+D++EY + A  R  +E E+   K    PV+R+ L+HRDY+VDL S+LGKT V+T 
Sbjct: 12  FRRKWDKDEYEKLAEKRLTEEREKKDGK-PVQPVKRELLRHRDYKVDLESKLGKTIVITK 71

Query: 75  VAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLK 134
             P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++L+QV++RFEV  
Sbjct: 72  TTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEV-N 131

Query: 135 KRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEEEPEVDPDVAAMMGF 194
           K+K      + D EER+ + +EEEE+ K  ++E++KE+K+    +   E D ++AA+MGF
Sbjct: 132 KKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEEDDEMAAVMGF 191

Query: 195 GGFRSSKK 203
            GF S+KK
Sbjct: 192 SGFGSTKK 197

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BLAST of CmaCh12G010380 vs. ExPASy Swiss-Prot
Match: P34670 (Putative zinc finger matrin-type protein snu-23 OS=Caenorhabditis elegans OX=6239 GN=snu-23 PE=3 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-29
Identity = 83/214 (38.79%), Postives = 143/214 (66.82%), Query Frame = 0


Query: 4   TSNTAAGVDNTFRRKFDREEYLERARDR--EKQEAERV---KSKLKGPPVQRKPLKHRDY 63
           + + A+G ++  RR +D +EY   A+ R  +++EAE +   K K   P V+R+ L+ R+Y
Sbjct: 7   SGSQASGTNH--RRTWDEKEYSLAAQQRLLDEKEAEDIRLGKKKKDEPKVKREMLQAREY 66

Query: 64  EVDLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRV 123
           +VDL+S++GK+ V+T   P ++  G+YC VC+CVVKDS N+LDHINGK HQR +GMSM+ 
Sbjct: 67  KVDLDSKVGKSVVITKATPSAETGGFYCDVCDCVVKDSINFLDHINGKNHQRNIGMSMKT 126

Query: 124 ERASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEE-------EQRKRERRERKKE 183
           +++++  V+ERF+++K +K      E  +E+ +   QEEE       + +K + R+RK++
Sbjct: 127 KKSTVADVRERFKLMKDKKEREK-KEAQVEQLLEDVQEEEARMADFKKDKKTDNRKRKRD 186

Query: 184 RKKEKAAEEEPE---VDPDVAAMMGFGGFRSSKK 203
            +K++  +++ +   +DP++ AMMGF GF +SK+
Sbjct: 187 TRKDEEEDDDEDDSGLDPEIRAMMGFSGFSTSKR 217

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BLAST of CmaCh12G010380 vs. ExPASy TrEMBL
Match: A0A6J1HQF6 (zinc finger matrin-type protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111465669 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.6e-101
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

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BLAST of CmaCh12G010380 vs. ExPASy TrEMBL
Match: A0A6J1FDL7 (zinc finger matrin-type protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111444413 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.3e-100
Identity = 200/202 (99.01%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKE+KKEKAAE+
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKEKKKEKAAED 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

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BLAST of CmaCh12G010380 vs. ExPASy TrEMBL
Match: A0A0A0LM02 (U1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G033890 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.3e-98
Identity = 196/202 (97.03%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQE +RVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEEQRKRERRERKKE+KKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of CmaCh12G010380 vs. ExPASy TrEMBL
Match: A0A1S3BWZ9 (zinc finger matrin-type protein 2 OS=Cucumis melo OX=3656 GN=LOC103494358 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.6e-98
Identity = 196/202 (97.03%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERAR+REKQE ERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEEQRKRERRERKKE+KKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of CmaCh12G010380 vs. ExPASy TrEMBL
Match: A0A6J1DQA3 (zinc finger matrin-type protein 2 OS=Momordica charantia OX=3673 GN=LOC111023331 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.1e-97
Identity = 193/202 (95.54%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSN AAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNPAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEE+R+R+RRERKKE+KKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPE+DPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEIDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of CmaCh12G010380 vs. NCBI nr
Match: XP_022965943.1 (zinc finger matrin-type protein 2 [Cucurbita maxima])

HSP 1 Score: 377.1 bits (967), Expect = 9.5e-101
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of CmaCh12G010380 vs. NCBI nr
Match: XP_023536719.1 (zinc finger matrin-type protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.9 bits (964), Expect = 2.1e-100
Identity = 201/202 (99.50%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKE+KKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of CmaCh12G010380 vs. NCBI nr
Match: KAG6586229.1 (Zinc finger matrin-type protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 374.8 bits (961), Expect = 4.7e-100
Identity = 200/202 (99.01%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1    MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60
            MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1304 MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 1363

Query: 61   DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
            DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 1364 DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 1423

Query: 121  ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180
            ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKE+KKEKAAE+
Sbjct: 1424 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKEKKKEKAAED 1483

Query: 181  EPEVDPDVAAMMGFGGFRSSKK 203
            EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 1484 EPEVDPDVAAMMGFGGFRSSKK 1505

[Close]

BLAST of CmaCh12G010380 vs. NCBI nr
Match: XP_022938279.1 (zinc finger matrin-type protein 2 [Cucurbita moschata])

HSP 1 Score: 374.8 bits (961), Expect = 4.7e-100
Identity = 200/202 (99.01%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKE+KKEKAAE+
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKEKKKEKAAED 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of CmaCh12G010380 vs. NCBI nr
Match: XP_011648855.1 (zinc finger matrin-type protein 2 [Cucumis sativus] >XP_011648858.1 zinc finger matrin-type protein 2 [Cucumis sativus] >XP_031737170.1 zinc finger matrin-type protein 2 [Cucumis sativus] >KGN60986.1 hypothetical protein Csa_021129 [Cucumis sativus])

HSP 1 Score: 369.0 bits (946), Expect = 2.6e-98
Identity = 196/202 (97.03%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQE +RVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEEQRKRERRERKKE+KKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of CmaCh12G010380 vs. TAIR 10
Match: AT3G05760.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 306.6 bits (784), Expect = 1.5e-83
Identity = 162/199 (81.41%), Postives = 181/199 (90.95%), Query Frame = 0


Query: 4   TSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEVDLN 63
           +SNT  GVDNTFR+KFD EE+ ERAR+REK+E++R KS+ KGPPVQR PLKHRDY VDL 
Sbjct: 3   SSNTTTGVDNTFRKKFDVEEFKERAREREKKESDRSKSRSKGPPVQRAPLKHRDYHVDLE 62

Query: 64  SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 123
           SRLGKTQVVTPVAPLSQQAGY+C VC+CVVKDSANYLDHINGKKHQRALGMSMRVER+SL
Sbjct: 63  SRLGKTQVVTPVAPLSQQAGYFCRVCDCVVKDSANYLDHINGKKHQRALGMSMRVERSSL 122

Query: 124 EQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEEEPE 183
           EQVQERFEVLKKRK PG+FTEQDL+ERI KQQEEEE+ KR+RRE+KKE+KK K  EEEPE
Sbjct: 123 EQVQERFEVLKKRKAPGTFTEQDLDERIRKQQEEEEELKRQRREKKKEKKKGKVVEEEPE 182

Query: 184 VDPDVAAMMGFGGFRSSKK 203
           +DP+VA MMGFGGF SSKK
Sbjct: 183 MDPEVAEMMGFGGFGSSKK 201

[Close]

BLAST of CmaCh12G010380 vs. TAIR 10
Match: AT3G05760.2 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 240.7 bits (613), Expect = 9.9e-64
Identity = 120/145 (82.76%), Postives = 133/145 (91.72%), Query Frame = 0


Query: 4   TSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEVDLN 63
           +SNT  GVDNTFR+KFD EE+ ERAR+REK+E++R KS+ KGPPVQR PLKHRDY VDL 
Sbjct: 3   SSNTTTGVDNTFRKKFDVEEFKERAREREKKESDRSKSRSKGPPVQRAPLKHRDYHVDLE 62

Query: 64  SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 123
           SRLGKTQVVTPVAPLSQQAGY+C VC+CVVKDSANYLDHINGKKHQRALGMSMRVER+SL
Sbjct: 63  SRLGKTQVVTPVAPLSQQAGYFCRVCDCVVKDSANYLDHINGKKHQRALGMSMRVERSSL 122

Query: 124 EQVQERFEVLKKRKTPGSFTEQDLE 149
           EQVQERFEVLKKRK PG+FTEQ+ E
Sbjct: 123 EQVQERFEVLKKRKAPGTFTEQERE 147

The following BLAST results are available for this feature:

BLAST of CmaCh12G010380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96NC0	1.5e-40	52.66	Zinc finger matrin-type protein 2 OS=Homo sapiens OX=9606 GN=ZMAT2 PE=1 SV=1	[more]
Q9CPW7	1.5e-40	52.66	Zinc finger matrin-type protein 2 OS=Mus musculus OX=10090 GN=Zmat2 PE=2 SV=1	[more]
P34670	1.6e-29	38.79	Putative zinc finger matrin-type protein snu-23 OS=Caenorhabditis elegans OX=623...	[more]

BLAST of CmaCh12G010380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HQF6	4.6e-101	100.00	zinc finger matrin-type protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111465669 PE...	[more]
A0A6J1FDL7	2.3e-100	99.01	zinc finger matrin-type protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111444413 ...	[more]
A0A0A0LM02	1.3e-98	97.03	U1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G033890 PE=...	[more]
A0A1S3BWZ9	1.6e-98	97.03	zinc finger matrin-type protein 2 OS=Cucumis melo OX=3656 GN=LOC103494358 PE=4 S...	[more]
A0A6J1DQA3	1.1e-97	95.54	zinc finger matrin-type protein 2 OS=Momordica charantia OX=3673 GN=LOC111023331...	[more]

BLAST of CmaCh12G010380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965943.1	9.5e-101	100.00	zinc finger matrin-type protein 2 [Cucurbita maxima]	[more]
XP_023536719.1	2.1e-100	99.50	zinc finger matrin-type protein 2 [Cucurbita pepo subsp. pepo]	[more]
KAG6586229.1	4.7e-100	99.01	Zinc finger matrin-type protein 2, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938279.1	4.7e-100	99.01	zinc finger matrin-type protein 2 [Cucurbita moschata]	[more]
XP_011648855.1	2.6e-98	97.03	zinc finger matrin-type protein 2 [Cucumis sativus] >XP_011648858.1 zinc finger ...	[more]

BLAST of CmaCh12G010380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05760.1	1.5e-83	81.41	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT3G05760.2	9.9e-64	82.76	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..42
None	No IPR available	COILS	Coil	Coil	coord: 116..136
None	No IPR available	COILS	Coil	Coil	coord: 144..181
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 79..116 e-value: 8.3E-7 score: 30.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..183
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 81..115 e-value: 2.0E-9 score: 47.3
IPR022755	Zinc finger, double-stranded RNA binding	PFAM	PF12171	zf-C2H2_jaz	coord: 84..109 e-value: 1.8E-6 score: 28.0
IPR040107	U4/U6.U5 small nuclear ribonucleoprotein component Snu23	PANTHER	PTHR45986	ZINC FINGER MATRIN-TYPE PROTEIN 2	coord: 7..202
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 79..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G010380.1	CmaCh12G010380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding