CmaCh12G009950 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G009950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor IBH1-like 1
Location	Cma_Chr12: 7949697 .. 7950167 (+)
RNA-Seq Expression	CmaCh12G009950
Synteny	CmaCh12G009950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCAACCCCATCAACCTCAAACGAATTTTCCTCAAGAAATGGATCATGGGTCTAAACCCCATCACCTTCTCAAACACAACCATGAACTTCTTAGAGAGAAAAAAGGCCATAAAAGCCTCCTCCGACTTGGCCATGGCTGCAACGAGAAACGGAGCGACTCGGTGGAGTCGAGCCATCATTGCCAAATCCATACAAGCTCCAACTGAGGCCAAGCTTCGAAGGAAGACCACGCTACATAAGATTGGTCGAAAATTGGCTAGGAGGCACACGCACTCGTCAAGGTCGAGGTCCGTAGCAAGATCAGTTGCTAAGAGATTGGTTCAAAAAAGGACCAAAGTTCTAAGGAGTTTGGTTCCTGGGGGAGAGTTTATGGAGGATGAAGCTTTGTTGATTGATGAAGCCCTAGATTACATATCATTTCTTCGAGTTCAAGTTGATGGAATGCGGTTTCTTGCTAATTGCAAATGA

mRNA sequence

ATGCCCAACCCCATCAACCTCAAACGAATTTTCCTCAAGAAATGGATCATGGGTCTAAACCCCATCACCTTCTCAAACACAACCATGAACTTCTTAGAGAGAAAAAAGGCCATAAAAGCCTCCTCCGACTTGGCCATGGCTGCAACGAGAAACGGAGCGACTCGGTGGAGTCGAGCCATCATTGCCAAATCCATACAAGCTCCAACTGAGGCCAAGCTTCGAAGGAAGACCACGCTACATAAGATTGGTCGAAAATTGGCTAGGAGGCACACGCACTCGTCAAGGTCGAGGTCCGTAGCAAGATCAGTTGCTAAGAGATTGGTTCAAAAAAGGACCAAAGTTCTAAGGAGTTTGGTTCCTGGGGGAGAGTTTATGGAGGATGAAGCTTTGTTGATTGATGAAGCCCTAGATTACATATCATTTCTTCGAGTTCAAGTTGATGGAATGCGGTTTCTTGCTAATTGCAAATGA

Coding sequence (CDS)

ATGCCCAACCCCATCAACCTCAAACGAATTTTCCTCAAGAAATGGATCATGGGTCTAAACCCCATCACCTTCTCAAACACAACCATGAACTTCTTAGAGAGAAAAAAGGCCATAAAAGCCTCCTCCGACTTGGCCATGGCTGCAACGAGAAACGGAGCGACTCGGTGGAGTCGAGCCATCATTGCCAAATCCATACAAGCTCCAACTGAGGCCAAGCTTCGAAGGAAGACCACGCTACATAAGATTGGTCGAAAATTGGCTAGGAGGCACACGCACTCGTCAAGGTCGAGGTCCGTAGCAAGATCAGTTGCTAAGAGATTGGTTCAAAAAAGGACCAAAGTTCTAAGGAGTTTGGTTCCTGGGGGAGAGTTTATGGAGGATGAAGCTTTGTTGATTGATGAAGCCCTAGATTACATATCATTTCTTCGAGTTCAAGTTGATGGAATGCGGTTTCTTGCTAATTGCAAATGA

Protein sequence

MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAIIAKSIQAPTEAKLRRKTTLHKIGRKLARRHTHSSRSRSVARSVAKRLVQKRTKVLRSLVPGGEFMEDEALLIDEALDYISFLRVQVDGMRFLANCK

Homology

[Close]

BLAST of CmaCh12G009950 vs. ExPASy Swiss-Prot
Match: Q9M0B9 (Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-20
Identity = 70/164 (42.68%), Postives = 97/164 (59.15%), Query Frame = 0


Query: 11  FLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAIIAKS------ 70
           FLKKW MGL     S    +  ERKKAIK S+D+AMA+ R G T WSRA+I K+      
Sbjct: 11  FLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRALIEKTATEDNF 70

Query: 71  --------IQAPT--EAKLRRKTTLH----KIGRKLARRHTHSSRSRSVARSVAKRLVQK 130
                   I+A T    KL +KT  H    +  +K+ RR + S+   + A+  AKRLV++
Sbjct: 71  LVRQMLSGIKAETLINKKLPKKTVCHRKIVRRSKKILRRKSKSASEEAAAK--AKRLVKR 130

Query: 131 RTKVLRSLVPGGEFMEDEALLIDEALDYISFLRVQVDGMRFLAN 155
           RT+ LR++VPGGE M ++ LL+ E LDYI  L+ QV+ MR + +
Sbjct: 131 RTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVD 172

[Close]

BLAST of CmaCh12G009950 vs. ExPASy Swiss-Prot
Match: O80482 (Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-05
Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 36  KAIKASSDLAMAATRNGATRWSRAIIAKSIQAPTEAKLRRKTTLHKIGRKLARRHTHSSR 95
           + I+ ++D  +AA+  G TRWSRAI+A  ++    AKL++         + A++ T + +
Sbjct: 85  REIRDTADRVLAASARGTTRWSRAILASRVR----AKLKK--------HRKAKKSTGNCK 144

Query: 96  SR---SVARSVAKRLVQKRTKVLRSLVPGGEFMEDEALLIDEALDYISFLRVQVDGMRFL 154
           SR   +    +    V+++ K+L  LVPG   +    LL DEA DYI+ L +QV  M  L
Sbjct: 145 SRKGLTETNRIKLPAVERKLKILGRLVPGCRKVSVPNLL-DEATDYIAALEMQVRAMEAL 192

[Close]

BLAST of CmaCh12G009950 vs. ExPASy Swiss-Prot
Match: Q9C8Z9 (Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.6e-05
Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = 0


Query: 19  LNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAIIAKSIQAPTEAKLRRKTT 78
           LN    ++++    +R KA++ ++D A+A +  G T WSRAI+A  I+     + R + T
Sbjct: 70  LNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKFRKQRRPRAT 129

Query: 79  LHKIGRKLARRHTHSSRSR----SVARSVAKRL--VQKRTKVLRSLVPGGEFMEDEALLI 138
           +  I        + S+RSR    SV R   K +  V ++ +VL  LVPG    +   +++
Sbjct: 130 M-AIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCG-KQSVPVIL 189

Query: 139 DEALDYISFLRVQVDGMRFL 153
           +EA DYI  L +QV  M  L
Sbjct: 190 EEATDYIQALEMQVRAMNSL 207

[Close]

BLAST of CmaCh12G009950 vs. ExPASy Swiss-Prot
Match: A0A0P0WQ90 (Transcription factor LATE FLOWERING OS=Oryza sativa subsp. japonica OX=39947 GN=LF PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.9e-04
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 93  SSRSRSVARSVAKRLVQKRTKVLRSLVPGGEFMEDEALLIDEALDYISFLRVQVDGMRFL 152
           SS  ++VA  + +  V +R +VL+ LVPGG  M D A ++DEA  Y+ FL+ Q++ +  L
Sbjct: 304 SSDPQTVAARLRRERVSERLRVLQRLVPGGSKM-DTATMLDEAASYLKFLKSQLEALETL 363

Query: 153 AN 155
            N
Sbjct: 364 GN 364

[Close]

BLAST of CmaCh12G009950 vs. ExPASy TrEMBL
Match: A0A6J1HLT3 (transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111465712 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.6e-77
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAI 60
           MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAI
Sbjct: 1   MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAI 60

Query: 61  IAKSIQAPTEAKLRRKTTLHKIGRKLARRHTHSSRSRSVARSVAKRLVQKRTKVLRSLVP 120
           IAKSIQAPTEAKLRRKTTLHKIGRKLARRHTHSSRSRSVARSVAKRLVQKRTKVLRSLVP
Sbjct: 61  IAKSIQAPTEAKLRRKTTLHKIGRKLARRHTHSSRSRSVARSVAKRLVQKRTKVLRSLVP 120

Query: 121 GGEFMEDEALLIDEALDYISFLRVQVDGMRFLANCK 157
           GGEFMEDEALLIDEALDYISFLRVQVDGMRFLANCK
Sbjct: 121 GGEFMEDEALLIDEALDYISFLRVQVDGMRFLANCK 156

[Close]

BLAST of CmaCh12G009950 vs. ExPASy TrEMBL
Match: A0A6J1FC37 (transcription factor IBH1-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111444263 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 9.8e-67
Identity = 138/156 (88.46%), Postives = 145/156 (92.95%), Query Frame = 0


Query: 1   MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAI 60
           MPNPINLK+IF+KKWIMGLNPITFSNT MNFLERK AIKA+SDLAMAATRNGAT WSRAI
Sbjct: 1   MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAI 60

Query: 61  IAKSIQAPTEAKLRRKTTLHKIGRKLARRHTHSSRSRSVARSVAKRLVQKRTKVLRSLVP 120
           IAKSIQAP EAKLRRKT L KI RK+AR  TH SRSRSVARSVAKRLV KRTK+LRSLVP
Sbjct: 61  IAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVARSVAKRLVHKRTKLLRSLVP 120

Query: 121 GGEFMEDEALLIDEALDYISFLRVQVDGMRFLANCK 157
           GGEFM+DEALLIDEALDYISFLRVQVDGMRFLA+CK
Sbjct: 121 GGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK 156

[Close]

BLAST of CmaCh12G009950 vs. ExPASy TrEMBL
Match: A0A5D3CK75 (Transcription factor IBH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00030 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.2e-42
Identity = 105/175 (60.00%), Postives = 129/175 (73.71%), Query Frame = 0


Query: 1   MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAI 60
           MPNP  LK+ FLK W++GL   T S T MNFL+RKKAIK S+D AMAATRNG T WS++I
Sbjct: 1   MPNPNKLKQQFLKNWLVGLQSTTSSTTNMNFLDRKKAIKISADYAMAATRNGTTIWSQSI 60

Query: 61  IAKSIQ--APTEAKLRRKTT-------------LHKIGRKLARRHTHSSR---SRSVARS 120
           IAKS++  AP EA L R+T+             L K+GRK+ R+    SR   S+++  +
Sbjct: 61  IAKSLKGHAPPEAILNRRTSYINLLRKKRTMTQLRKMGRKIGRKMARRSRLPLSKALPST 120

Query: 121 VAKRLVQKRTKVLRSLVPGGEFMEDEALLIDEALDYISFLRVQVDGMRFLAN-CK 157
           +AKRLV+KRTKVLRSL+PGGEFM+DEALLI+EALDYI FL+ QVDGMRFLAN CK
Sbjct: 121 IAKRLVEKRTKVLRSLIPGGEFMKDEALLIEEALDYIPFLQAQVDGMRFLANYCK 175

[Close]

BLAST of CmaCh12G009950 vs. ExPASy TrEMBL
Match: A0A0A0LM92 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047790 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.2e-40
Identity = 106/177 (59.89%), Postives = 127/177 (71.75%), Query Frame = 0


Query: 1   MPNPINLKRIFLKKWIMGLNPITFSNTT-MNFLERKKAIKASSDLAMAATRNGATRWSRA 60
           MPNP  LK+ FLKKW++GL   T S+TT MNFL+RKKAIK S+D AMA TR G T WS++
Sbjct: 1   MPNPNKLKQQFLKKWLVGLRSTTSSSTTNMNFLDRKKAIKISADYAMAETRKGTTIWSQS 60

Query: 61  IIAKSIQ--APTEA-------------KLRRKTTLHKIGRKLARRHTHSSR---SRSVAR 120
           IIAKS++  AP +A             K R  T L K+GRK+ RR    SR   S+ + R
Sbjct: 61  IIAKSLKGHAPPKAILNRGTIYINLLRKKRTMTQLQKMGRKIGRRMARRSRLPSSKVLPR 120

Query: 121 SVAKRLVQKRTKVLRSLVPGGEFMEDEALLIDEALDYISFLRVQVDGMRFLAN--CK 157
           ++AKRLV+KRTKVLRSL+PGGEFMEDE LLI+EALDYI FL+ QVDGMRFLAN  CK
Sbjct: 121 TIAKRLVEKRTKVLRSLIPGGEFMEDEVLLIEEALDYIPFLQAQVDGMRFLANYYCK 177

[Close]

BLAST of CmaCh12G009950 vs. ExPASy TrEMBL
Match: A0A1S3BT01 (uncharacterized protein LOC103493395 OS=Cucumis melo OX=3656 GN=LOC103493395 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.6e-40
Identity = 103/175 (58.86%), Postives = 127/175 (72.57%), Query Frame = 0


Query: 1   MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAI 60
           MPN   LK+ FLK W++GL   T S T MNFL+RKKAIK S+D AMAATRNG T WS++I
Sbjct: 1   MPNLNKLKQQFLKNWLVGLQSTTSSTTNMNFLDRKKAIKISADYAMAATRNGTTIWSQSI 60

Query: 61  IAKSIQ--APTEAKLRRKTT-------------LHKIGRKLARRHTHSSR---SRSVARS 120
           IAK ++  AP EA L R+T+             L K+GRK+ R+    SR   S+++  +
Sbjct: 61  IAKYLKGHAPPEAILNRRTSYINLLRKKRTMTQLRKMGRKIGRKMARRSRLPLSKALPST 120

Query: 121 VAKRLVQKRTKVLRSLVPGGEFMEDEALLIDEALDYISFLRVQVDGMRFLAN-CK 157
           +AKRLV+KRTKVLRSL+PGGEFM+DEALLI+EALDYI FL+ QVDGMRFLAN CK
Sbjct: 121 IAKRLVEKRTKVLRSLIPGGEFMKDEALLIEEALDYIPFLQAQVDGMRFLANYCK 175

[Close]

BLAST of CmaCh12G009950 vs. NCBI nr
Match: XP_022965992.1 (transcription factor IBH1-like 1 [Cucurbita maxima])

HSP 1 Score: 297.4 bits (760), Expect = 7.4e-77
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAI 60
           MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAI
Sbjct: 1   MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAI 60

Query: 61  IAKSIQAPTEAKLRRKTTLHKIGRKLARRHTHSSRSRSVARSVAKRLVQKRTKVLRSLVP 120
           IAKSIQAPTEAKLRRKTTLHKIGRKLARRHTHSSRSRSVARSVAKRLVQKRTKVLRSLVP
Sbjct: 61  IAKSIQAPTEAKLRRKTTLHKIGRKLARRHTHSSRSRSVARSVAKRLVQKRTKVLRSLVP 120

Query: 121 GGEFMEDEALLIDEALDYISFLRVQVDGMRFLANCK 157
           GGEFMEDEALLIDEALDYISFLRVQVDGMRFLANCK
Sbjct: 121 GGEFMEDEALLIDEALDYISFLRVQVDGMRFLANCK 156

[Close]

BLAST of CmaCh12G009950 vs. NCBI nr
Match: XP_023537774.1 (transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.9 bits (699), Expect = 8.8e-70
Identity = 142/156 (91.03%), Postives = 149/156 (95.51%), Query Frame = 0


Query: 1   MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAI 60
           MPNPINLK+IF+KKWIMGLNPITFSNT MNFLERK AIKA+SDLAMA TRNGATRWSRAI
Sbjct: 1   MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMATTRNGATRWSRAI 60

Query: 61  IAKSIQAPTEAKLRRKTTLHKIGRKLARRHTHSSRSRSVARSVAKRLVQKRTKVLRSLVP 120
           IAKSIQAP EAKLRRKT L KIGRK+ARRHTH+SRSRSVARSVAKRLV KRTK+LRSLVP
Sbjct: 61  IAKSIQAPPEAKLRRKTMLRKIGRKVARRHTHTSRSRSVARSVAKRLVHKRTKLLRSLVP 120

Query: 121 GGEFMEDEALLIDEALDYISFLRVQVDGMRFLANCK 157
           GGEFM+DEALLIDEALDYISFLRVQVDGMRFLANCK
Sbjct: 121 GGEFMKDEALLIDEALDYISFLRVQVDGMRFLANCK 156

[Close]

BLAST of CmaCh12G009950 vs. NCBI nr
Match: XP_022938061.1 (transcription factor IBH1-like 1 [Cucurbita moschata])

HSP 1 Score: 262.7 bits (670), Expect = 2.0e-66
Identity = 138/156 (88.46%), Postives = 145/156 (92.95%), Query Frame = 0


Query: 1   MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAI 60
           MPNPINLK+IF+KKWIMGLNPITFSNT MNFLERK AIKA+SDLAMAATRNGAT WSRAI
Sbjct: 1   MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAI 60

Query: 61  IAKSIQAPTEAKLRRKTTLHKIGRKLARRHTHSSRSRSVARSVAKRLVQKRTKVLRSLVP 120
           IAKSIQAP EAKLRRKT L KI RK+AR  TH SRSRSVARSVAKRLV KRTK+LRSLVP
Sbjct: 61  IAKSIQAPPEAKLRRKTMLRKIARKVARSRTHLSRSRSVARSVAKRLVHKRTKLLRSLVP 120

Query: 121 GGEFMEDEALLIDEALDYISFLRVQVDGMRFLANCK 157
           GGEFM+DEALLIDEALDYISFLRVQVDGMRFLA+CK
Sbjct: 121 GGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK 156

[Close]

BLAST of CmaCh12G009950 vs. NCBI nr
Match: KAG6586187.1 (Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260.4 bits (664), Expect = 1.0e-65
Identity = 139/158 (87.97%), Postives = 146/158 (92.41%), Query Frame = 0


Query: 1   MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAI 60
           MPNPINLK+IF+KKWIMGLNPITFSNT MNFLERK AIKA+SDLAMAATRNGAT WSRAI
Sbjct: 1   MPNPINLKQIFIKKWIMGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAI 60

Query: 61  IAKSIQAPTEAKLRRKTTLHKIGRKLARRHTH--SSRSRSVARSVAKRLVQKRTKVLRSL 120
           IAKSIQAP EAKLRRKTTL KI RK+AR  TH   SRSRSVARSVAKRLV KRTK+LRSL
Sbjct: 61  IAKSIQAPPEAKLRRKTTLRKIARKVARSRTHLSRSRSRSVARSVAKRLVHKRTKLLRSL 120

Query: 121 VPGGEFMEDEALLIDEALDYISFLRVQVDGMRFLANCK 157
           VPGGEFM+DEALLIDEALDYISFLRVQVDGMRFLA+CK
Sbjct: 121 VPGGEFMKDEALLIDEALDYISFLRVQVDGMRFLADCK 158

[Close]

BLAST of CmaCh12G009950 vs. NCBI nr
Match: KAG7021018.1 (Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.2 bits (583), Expect = 2.5e-56
Identity = 125/142 (88.03%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 17  MGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAIIAKSIQAPTEAKLRRK 76
           MGLNPITFSNT MNFLERK AIKA+SDLAMAATRNGAT WSRAIIAKSIQAP EAKLRRK
Sbjct: 1   MGLNPITFSNTNMNFLERKNAIKAASDLAMAATRNGATHWSRAIIAKSIQAPPEAKLRRK 60

Query: 77  TTLHKIGRKLARRHTH--SSRSRSVARSVAKRLVQKRTKVLRSLVPGGEFMEDEALLIDE 136
           TTL KI RK+AR  TH   SRSRSVARSVAKRLV KRTK+LRSLVPGGEFM+DEALLIDE
Sbjct: 61  TTLRKIARKVARSRTHLSRSRSRSVARSVAKRLVHKRTKLLRSLVPGGEFMKDEALLIDE 120

Query: 137 ALDYISFLRVQVDGMRFLANCK 157
           ALDYISFLRVQVDGMRFLA+CK
Sbjct: 121 ALDYISFLRVQVDGMRFLADCK 142

[Close]

BLAST of CmaCh12G009950 vs. TAIR 10
Match: AT5G57780.1 (EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G30410.1); Has 123 Blast hits to 123 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 123; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 101.7 bits (252), Expect = 5.6e-22
Identity = 70/155 (45.16%), Postives = 94/155 (60.65%), Query Frame = 0


Query: 1   MPNPINL-KRIFLKKWIMGLNPITFS-NTTMNFLERKKAIKASSDLAMAATRNGATRWSR 60
           M N  N+ K+ F+KKWI  L+ +  S    +N  ERK AI+ SSDLAMAA RNG+T WSR
Sbjct: 1   MMNTYNMVKQEFIKKWINTLHMLDSSIEHPLNVTERKNAIRLSSDLAMAAARNGSTVWSR 60

Query: 61  AIIAKSIQAPTEAKLRRKTTLHKIGRKLARRHTHSSRSRSVARSVAKRLVQKRTKVLRSL 120
           A+I++S        + R+  L K   ++  R     R+       AK  V+KRT +L+SL
Sbjct: 61  ALISRSGNKTANKPMARR-ILKKARNRMKNRCNILRRN---GNFTAKTWVRKRTDLLKSL 120

Query: 121 VPGGEFMEDEALLIDEALDYISFLRVQVDGMRFLA 154
           VPGGE ++D+  LI E LDYI +LR QVD MR +A
Sbjct: 121 VPGGELIDDKDYLIRETLDYIVYLRAQVDVMRTVA 151

[Close]

BLAST of CmaCh12G009950 vs. TAIR 10
Match: AT4G30410.2 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 100.9 bits (250), Expect = 9.5e-22
Identity = 70/164 (42.68%), Postives = 97/164 (59.15%), Query Frame = 0


Query: 11  FLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAIIAKS------ 70
           FLKKW MGL     S    +  ERKKAIK S+D+AMA+ R G T WSRA+I K+      
Sbjct: 11  FLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRALIEKTATEDNF 70

Query: 71  --------IQAPT--EAKLRRKTTLH----KIGRKLARRHTHSSRSRSVARSVAKRLVQK 130
                   I+A T    KL +KT  H    +  +K+ RR + S+   + A+  AKRLV++
Sbjct: 71  LVRQMLSGIKAETLINKKLPKKTVCHRKIVRRSKKILRRKSKSASEEAAAK--AKRLVKR 130

Query: 131 RTKVLRSLVPGGEFMEDEALLIDEALDYISFLRVQVDGMRFLAN 155
           RT+ LR++VPGGE M ++ LL+ E LDYI  L+ QV+ MR + +
Sbjct: 131 RTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVD 172

[Close]

BLAST of CmaCh12G009950 vs. TAIR 10
Match: AT4G30410.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 100.9 bits (250), Expect = 9.5e-22
Identity = 70/164 (42.68%), Postives = 97/164 (59.15%), Query Frame = 0


Query: 11  FLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAIIAKS------ 70
           FLKKW MGL     S    +  ERKKAIK S+D+AMA+ R G T WSRA+I K+      
Sbjct: 11  FLKKWQMGLQIFRPSIDNTSVHERKKAIKLSADVAMASLRKGTTCWSRALIEKTATEDNF 70

Query: 71  --------IQAPT--EAKLRRKTTLH----KIGRKLARRHTHSSRSRSVARSVAKRLVQK 130
                   I+A T    KL +KT  H    +  +K+ RR + S+   + A+  AKRLV++
Sbjct: 71  LVRQMLSGIKAETLINKKLPKKTVCHRKIVRRSKKILRRKSKSASEEAAAK--AKRLVKR 130

Query: 131 RTKVLRSLVPGGEFMEDEALLIDEALDYISFLRVQVDGMRFLAN 155
           RT+ LR++VPGGE M ++ LL+ E LDYI  L+ QV+ MR + +
Sbjct: 131 RTQGLRNVVPGGELMSNDVLLLQETLDYIVSLQTQVNVMRSIVD 172

[Close]

BLAST of CmaCh12G009950 vs. TAIR 10
Match: AT1G09250.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.9e-06
Identity = 41/121 (33.88%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 36  KAIKASSDLAMAATRNGATRWSRAIIAKSIQAPTEAKLRRKTTLHKIGRKLARRHTHSSR 95
           + I+ ++D  +AA+  G TRWSRAI+A  ++    AKL++         + A++ T + +
Sbjct: 85  REIRDTADRVLAASARGTTRWSRAILASRVR----AKLKK--------HRKAKKSTGNCK 144

Query: 96  SR---SVARSVAKRLVQKRTKVLRSLVPGGEFMEDEALLIDEALDYISFLRVQVDGMRFL 154
           SR   +    +    V+++ K+L  LVPG   +    LL DEA DYI+ L +QV  M  L
Sbjct: 145 SRKGLTETNRIKLPAVERKLKILGRLVPGCRKVSVPNLL-DEATDYIAALEMQVRAMEAL 192

[Close]

BLAST of CmaCh12G009950 vs. TAIR 10
Match: AT3G06590.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-06
Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = 0


Query: 19  LNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAIIAKSIQAPTEAKLRRKTT 78
           LN    ++++    +R KA++ ++D A+A +  G T WSRAI+A  I+     + R + T
Sbjct: 70  LNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLWSRAILANRIKLKFRKQRRPRAT 129

Query: 79  LHKIGRKLARRHTHSSRSR----SVARSVAKRL--VQKRTKVLRSLVPGGEFMEDEALLI 138
           +  I        + S+RSR    SV R   K +  V ++ +VL  LVPG    +   +++
Sbjct: 130 M-AIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRKVRVLGRLVPGCG-KQSVPVIL 189

Query: 139 DEALDYISFLRVQVDGMRFL 153
           +EA DYI  L +QV  M  L
Sbjct: 190 EEATDYIQALEMQVRAMNSL 207

The following BLAST results are available for this feature:

BLAST of CmaCh12G009950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0B9	1.3e-20	42.68	Transcription factor IBH1-like 1 OS=Arabidopsis thaliana OX=3702 GN=IBL1 PE=1 SV...	[more]
O80482	2.7e-05	33.88	Transcription factor bHLH149 OS=Arabidopsis thaliana OX=3702 GN=BHLH149 PE=1 SV=...	[more]
Q9C8Z9	4.6e-05	32.14	Transcription factor bHLH148 OS=Arabidopsis thaliana OX=3702 GN=BHLH148 PE=1 SV=...	[more]
A0A0P0WQ90	3.9e-04	40.32	Transcription factor LATE FLOWERING OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]

BLAST of CmaCh12G009950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLT3	3.6e-77	100.00	transcription factor IBH1-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111465712 PE=...	[more]
A0A6J1FC37	9.8e-67	88.46	transcription factor IBH1-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111444263 P...	[more]
A0A5D3CK75	2.2e-42	60.00	Transcription factor IBH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LM92	1.2e-40	59.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G047790 PE=4 SV=1	[more]
A0A1S3BT01	1.6e-40	58.86	uncharacterized protein LOC103493395 OS=Cucumis melo OX=3656 GN=LOC103493395 PE=...	[more]

BLAST of CmaCh12G009950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965992.1	7.4e-77	100.00	transcription factor IBH1-like 1 [Cucurbita maxima]	[more]
XP_023537774.1	8.8e-70	91.03	transcription factor IBH1-like 1 [Cucurbita pepo subsp. pepo]	[more]
XP_022938061.1	2.0e-66	88.46	transcription factor IBH1-like 1 [Cucurbita moschata]	[more]
KAG6586187.1	1.0e-65	87.97	Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7021018.1	2.5e-56	88.03	Transcription factor IBH1-like 1, partial [Cucurbita argyrosperma subsp. argyros...	[more]

BLAST of CmaCh12G009950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57780.1	5.6e-22	45.16	EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arab...	[more]
AT4G30410.2	9.5e-22	42.68	sequence-specific DNA binding transcription factors	[more]
AT4G30410.1	9.5e-22	42.68	sequence-specific DNA binding transcription factors	[more]
AT1G09250.1	1.9e-06	33.88	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G06590.1	3.3e-06	32.14	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 7..154
None	No IPR available	PANTHER	PTHR33124:SF5	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 7..154
IPR044549	Transcription factor IBH1-like, bHLH domain	CDD	cd11444	bHLH_AtIBH1_like	coord: 105..153 e-value: 1.4313E-12 score: 57.2472

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G009950.1	CmaCh12G009950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0005488	binding