CmaCh12G008730 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G008730
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein GLUTAMINE DUMPER 2-like
Location	Cma_Chr12: 6561766 .. 6562221 (-)
RNA-Seq Expression	CmaCh12G008730
Synteny	CmaCh12G008730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGCCAGCAGAGAATCTTTTATCACCATGGAGACACCCTCACCCACCACGCTGTGGCATACGTCGGTGCCATACTTATTCGGCGCCCTCGCTGCCGTTTCAAGTCTTATAGCCATTGCCCTCTTCATCATTGCCTGCTCATATTGCTGGAACGTCTCTGCATCTGTATTGAACAGCCACGCCAGTGCTGCTCGAGCCGCCGACATGGAGTCTGCTCATGGCAAGGGCGGAGATGGCCGGAATCCGCCGCCACCCACGGTGTTTCAGGACAAGCTGTTGGTAATAATGGCGGGAGAAGTTAACCCAAGTTTCATAGCCGCTCCCATGTCGCTGGGTTCAGATTGTAGTAAAGTTACGTGCTGCCGTGAAATGAAGGCCACGGCGGCGGAGCATGGTGGCGCTGATCAGTTGCAGATGGGTCCCACAAGCTCGTTGTTTTCTTTGGGGTAA

mRNA sequence

ATGGCTGCAGCCAGCAGAGAATCTTTTATCACCATGGAGACACCCTCACCCACCACGCTGTGGCATACGTCGGTGCCATACTTATTCGGCGCCCTCGCTGCCGTTTCAAGTCTTATAGCCATTGCCCTCTTCATCATTGCCTGCTCATATTGCTGGAACGTCTCTGCATCTGTATTGAACAGCCACGCCAGTGCTGCTCGAGCCGCCGACATGGAGTCTGCTCATGGCAAGGGCGGAGATGGCCGGAATCCGCCGCCACCCACGGTGTTTCAGGACAAGCTGTTGGTAATAATGGCGGGAGAAGTTAACCCAAGTTTCATAGCCGCTCCCATGTCGCTGGGTTCAGATTGTAGTAAAGTTACGTGCTGCCGTGAAATGAAGGCCACGGCGGCGGAGCATGGTGGCGCTGATCAGTTGCAGATGGGTCCCACAAGCTCGTTGTTTTCTTTGGGGTAA

Coding sequence (CDS)

ATGGCTGCAGCCAGCAGAGAATCTTTTATCACCATGGAGACACCCTCACCCACCACGCTGTGGCATACGTCGGTGCCATACTTATTCGGCGCCCTCGCTGCCGTTTCAAGTCTTATAGCCATTGCCCTCTTCATCATTGCCTGCTCATATTGCTGGAACGTCTCTGCATCTGTATTGAACAGCCACGCCAGTGCTGCTCGAGCCGCCGACATGGAGTCTGCTCATGGCAAGGGCGGAGATGGCCGGAATCCGCCGCCACCCACGGTGTTTCAGGACAAGCTGTTGGTAATAATGGCGGGAGAAGTTAACCCAAGTTTCATAGCCGCTCCCATGTCGCTGGGTTCAGATTGTAGTAAAGTTACGTGCTGCCGTGAAATGAAGGCCACGGCGGCGGAGCATGGTGGCGCTGATCAGTTGCAGATGGGTCCCACAAGCTCGTTGTTTTCTTTGGGGTAA

Protein sequence

MAAASRESFITMETPSPTTLWHTSVPYLFGALAAVSSLIAIALFIIACSYCWNVSASVLNSHASAARAADMESAHGKGGDGRNPPPPTVFQDKLLVIMAGEVNPSFIAAPMSLGSDCSKVTCCREMKATAAEHGGADQLQMGPTSSLFSLG

Homology

[Close]

BLAST of CmaCh12G008730 vs. ExPASy Swiss-Prot
Match: Q9FHH5 (Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana OX=3702 GN=GDU3 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-10
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 17  PTTLWHTSVPYLFGALAAVSSLIAIALFIIACSYCWNVSASVLNSHASAARAADMESAHG 76
           P + WH+ VPYLFG LAA+  LIA AL I+ACSY W +S   L+   + +R  D+E    
Sbjct: 24  PHSPWHSPVPYLFGGLAAMLGLIAFALLILACSY-WRLS-GYLDGEENQSRERDLEVGDV 83

Query: 77  KGGDGRNPPPPTVFQDKLLVIMAGEVNPSFIAAP 111
           K    +    P    +K LVIMAG V P+++A P
Sbjct: 84  K--PDKTAVKPVALPEKFLVIMAGNVKPTYLATP 113

[Close]

BLAST of CmaCh12G008730 vs. ExPASy Swiss-Prot
Match: Q9SW07 (Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana OX=3702 GN=GDU2 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.9e-10
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 17  PTTLWHTSVPYLFGALAAVSSLIAIALFIIACSYCWNVSASVLNSHASAARAADMESA-H 76
           P + WH+ VPYLFG LAA+ +LI +AL I+ACSY W +S S            D+E+   
Sbjct: 24  PHSPWHSPVPYLFGGLAAMLALICVALLILACSY-WRLSGSA---------ERDLEAGDD 83

Query: 77  GKGGDGRNPPPPTVFQDKLLVIMAGEVNPSFIAAP 111
            K  +  N    T   +K LVIMAG+V P+++A P
Sbjct: 84  AKPDNDTNKTKHTEMPEKFLVIMAGDVRPTYLATP 108

[Close]

BLAST of CmaCh12G008730 vs. ExPASy Swiss-Prot
Match: Q3E965 (Protein GLUTAMINE DUMPER 5 OS=Arabidopsis thaliana OX=3702 GN=GDU5 PE=2 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-09
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 8   SFITMETPSPTTLWHTSVPYLFGALAAVSSLIAIALFIIACSYCWNVSASVLNSHASAAR 67
           + +  +T SP   W T VPYLFG LAA+  LIA AL ++ACSY W +S           R
Sbjct: 18  TMVESQTRSP---WRTPVPYLFGGLAAMLGLIAFALLLLACSY-WRLS-----------R 77

Query: 68  AADMESAHGKGGDGRNPPPPTVFQDKLLVIMAGEVNPSFIAAPMS 113
             + E    + G+         F++K+LVIMAG+ NP+F+A P++
Sbjct: 78  QTEDEEKQTESGE---KVVAKAFEEKILVIMAGQNNPTFLATPVA 104

[Close]

BLAST of CmaCh12G008730 vs. ExPASy Swiss-Prot
Match: O81775 (Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana OX=3702 GN=GDU1 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.9e-09
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 16  SPTTLWHTSVPYLFGALAAVSSLIAIALFIIACSYCWNVSASVLNSHASAARAADMESAH 75
           +P + WH+ VPYLFG LAA+  LIA AL I+ACSY W +S    +S     +  D E   
Sbjct: 25  TPQSPWHSPVPYLFGGLAAMLGLIAFALLILACSY-WRLS----SSGEEDGQNVDEEKES 84

Query: 76  GKGGDGRNPPPPTVFQDKLLVIMAGEVNPSFIAAPMSLGSDC 118
             G    N      +++K LVIMAGE  P ++A P      C
Sbjct: 85  RSGDKAAN----GAYEEKFLVIMAGEDLPRYLATPAMKKCTC 117

[Close]

BLAST of CmaCh12G008730 vs. ExPASy Swiss-Prot
Match: Q8S8A0 (Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana OX=3702 GN=GDU4 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-08
Identity = 56/143 (39.16%), Postives = 72/143 (50.35%), Query Frame = 0


Query: 3   AASRESFITMETP-SPTTLWHTSVPYLFGALAAVSSLIAIALFIIACSYCWNVSASVLNS 62
           A S ESF     P SP   WH+ VPYLFG LAA+  LIA AL I+ACSY W +S S  +S
Sbjct: 17  ATSVESFGNHRPPISP---WHSPVPYLFGGLAAMLGLIAFALLILACSY-WRLSTSGDDS 76

Query: 63  HASAARAADMESAHGKGGDGRNPPPPTVFQDKLLVIMAGEVNPSFIAAPMSLGSDCSKVT 122
                   D E     G    +       ++K+LVIMAG+  P F+A P +     +K  
Sbjct: 77  ----GERVDEEKESRSGVKAAS----AACEEKVLVIMAGDDLPRFLATPAA-----NKCM 136

Query: 123 CCREMKATA-AEHG-GADQLQMG 143
           C  E +     E G GA + +MG
Sbjct: 137 CGHEGRMVIFKEDGIGAGEEKMG 142

[Close]

BLAST of CmaCh12G008730 vs. TAIR 10
Match: AT5G57685.1 (glutamine dumper 3 )

HSP 1 Score: 67.8 bits (164), Expect = 8.6e-12
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 17  PTTLWHTSVPYLFGALAAVSSLIAIALFIIACSYCWNVSASVLNSHASAARAADMESAHG 76
           P + WH+ VPYLFG LAA+  LIA AL I+ACSY W +S   L+   + +R  D+E    
Sbjct: 24  PHSPWHSPVPYLFGGLAAMLGLIAFALLILACSY-WRLS-GYLDGEENQSRERDLEVGDV 83

Query: 77  KGGDGRNPPPPTVFQDKLLVIMAGEVNPSFIAAP 111
           K    +    P    +K LVIMAG V P+++A P
Sbjct: 84  K--PDKTAVKPVALPEKFLVIMAGNVKPTYLATP 113

[Close]

BLAST of CmaCh12G008730 vs. TAIR 10
Match: AT4G25760.1 (glutamine dumper 2 )

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-11
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = 0


Query: 17  PTTLWHTSVPYLFGALAAVSSLIAIALFIIACSYCWNVSASVLNSHASAARAADMESA-H 76
           P + WH+ VPYLFG LAA+ +LI +AL I+ACSY W +S S            D+E+   
Sbjct: 24  PHSPWHSPVPYLFGGLAAMLALICVALLILACSY-WRLSGSA---------ERDLEAGDD 83

Query: 77  GKGGDGRNPPPPTVFQDKLLVIMAGEVNPSFIAAP 111
            K  +  N    T   +K LVIMAG+V P+++A P
Sbjct: 84  AKPDNDTNKTKHTEMPEKFLVIMAGDVRPTYLATP 108

[Close]

BLAST of CmaCh12G008730 vs. TAIR 10
Match: AT5G24920.1 (glutamine dumper 5 )

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-10
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 8   SFITMETPSPTTLWHTSVPYLFGALAAVSSLIAIALFIIACSYCWNVSASVLNSHASAAR 67
           + +  +T SP   W T VPYLFG LAA+  LIA AL ++ACSY W +S           R
Sbjct: 18  TMVESQTRSP---WRTPVPYLFGGLAAMLGLIAFALLLLACSY-WRLS-----------R 77

Query: 68  AADMESAHGKGGDGRNPPPPTVFQDKLLVIMAGEVNPSFIAAPMS 113
             + E    + G+         F++K+LVIMAG+ NP+F+A P++
Sbjct: 78  QTEDEEKQTESGE---KVVAKAFEEKILVIMAGQNNPTFLATPVA 104

[Close]

BLAST of CmaCh12G008730 vs. TAIR 10
Match: AT4G31730.1 (glutamine dumper 1 )

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-10
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 16  SPTTLWHTSVPYLFGALAAVSSLIAIALFIIACSYCWNVSASVLNSHASAARAADMESAH 75
           +P + WH+ VPYLFG LAA+  LIA AL I+ACSY W +S    +S     +  D E   
Sbjct: 25  TPQSPWHSPVPYLFGGLAAMLGLIAFALLILACSY-WRLS----SSGEEDGQNVDEEKES 84

Query: 76  GKGGDGRNPPPPTVFQDKLLVIMAGEVNPSFIAAPMSLGSDC 118
             G    N      +++K LVIMAGE  P ++A P      C
Sbjct: 85  RSGDKAAN----GAYEEKFLVIMAGEDLPRYLATPAMKKCTC 117

[Close]

BLAST of CmaCh12G008730 vs. TAIR 10
Match: AT2G24762.1 (glutamine dumper 4 )

HSP 1 Score: 59.7 bits (143), Expect = 2.3e-09
Identity = 56/143 (39.16%), Postives = 72/143 (50.35%), Query Frame = 0


Query: 3   AASRESFITMETP-SPTTLWHTSVPYLFGALAAVSSLIAIALFIIACSYCWNVSASVLNS 62
           A S ESF     P SP   WH+ VPYLFG LAA+  LIA AL I+ACSY W +S S  +S
Sbjct: 17  ATSVESFGNHRPPISP---WHSPVPYLFGGLAAMLGLIAFALLILACSY-WRLSTSGDDS 76

Query: 63  HASAARAADMESAHGKGGDGRNPPPPTVFQDKLLVIMAGEVNPSFIAAPMSLGSDCSKVT 122
                   D E     G    +       ++K+LVIMAG+  P F+A P +     +K  
Sbjct: 77  ----GERVDEEKESRSGVKAAS----AACEEKVLVIMAGDDLPRFLATPAA-----NKCM 136

Query: 123 CCREMKATA-AEHG-GADQLQMG 143
           C  E +     E G GA + +MG
Sbjct: 137 CGHEGRMVIFKEDGIGAGEEKMG 142

The following BLAST results are available for this feature:

BLAST of CmaCh12G008730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHH5	1.2e-10	43.62	Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana OX=3702 GN=GDU3 PE=1 SV=1	[more]
Q9SW07	7.9e-10	42.11	Protein GLUTAMINE DUMPER 2 OS=Arabidopsis thaliana OX=3702 GN=GDU2 PE=2 SV=1	[more]
Q3E965	3.0e-09	39.05	Protein GLUTAMINE DUMPER 5 OS=Arabidopsis thaliana OX=3702 GN=GDU5 PE=2 SV=2	[more]
O81775	3.9e-09	40.20	Protein GLUTAMINE DUMPER 1 OS=Arabidopsis thaliana OX=3702 GN=GDU1 PE=1 SV=1	[more]
Q8S8A0	3.3e-08	39.16	Protein GLUTAMINE DUMPER 4 OS=Arabidopsis thaliana OX=3702 GN=GDU4 PE=2 SV=1	[more]

BLAST of CmaCh12G008730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57685.1	8.6e-12	43.62	glutamine dumper 3	[more]
AT4G25760.1	5.6e-11	42.11	glutamine dumper 2	[more]
AT5G24920.1	2.1e-10	39.05	glutamine dumper 5	[more]
AT4G31730.1	2.8e-10	40.20	glutamine dumper 1	[more]
AT2G24762.1	2.3e-09	39.16	glutamine dumper 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33228:SF44	SUBFAMILY NOT NAMED	coord: 11..131
IPR040359	Protein glutamine dumper	PANTHER	PTHR33228	PROTEIN GLUTAMINE DUMPER 4-RELATED	coord: 11..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G008730.1	CmaCh12G008730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080143	regulation of amino acid export
cellular_component	GO:0016021	integral component of membrane