CmaCh12G004510 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh12G004510
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionnucleolar protein 14 isoform X1
LocationCma_Chr12: 2377142 .. 2380169 (+)
RNA-Seq ExpressionCmaCh12G004510
SyntenyCmaCh12G004510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACGAAGAGCTTGGGAATTTGACGAGGCTATTTTACGTTCGCAGTGCGAATGGAAGGTGAGTGCAATGGTCTGTTCCGAGCATTTGGTTCTAGCATCATTTACTGCTATCTGTTCTGATTGCATTTTTTCTTTAGCTAAAACTGAACAAGAGCAGAAAATTTAACTTATCAAATGGAGAAGAGGATGATTATCCTGGAAGCCAAAGTCTTGGCGTATGCTTAAGAAACGTTTTAAAAAACGTGAGCGAGAAAATCCCTGAAGAAAATTTTAGAGAAAACAATGTTATAGACTAAAAACGAATAAGCAACAACAACGATTTTGATAGCATATAATCTGGGTGTAAACATGATTTTAGTGACCGGTCATGCACCCTCTATATTGACACAGCAAGAAATAGTAAAGTCTTATCCAACATGAAAGCAAGTAAAGGGATATGGAACGGGCATGTAACTATGGACAACACGTTCTGAACAACCATGACCGAGACATCCGTCATGCGGCCACTGGCAATACGCCTTGGACAAGCATGACCATAAAAGTTCTTTATTACTAAGGTGTTCGCTTGTGCCTCCAGTAATTAGGTGCGTGATCTTACCGATAGATCTTACATGTAAATACTAAATTTCTAGAAATTTGGTGTTTATTACAAAAACAAACGGCCTTTTTCATGAATCATGAATCATGAATATGGTATTAATGTCTGGTTCAGAGATTCTATGGTATTCTTTTGCAATATTTTTCTGTATCAGCAAATAAGAAGCCAGCCATTAAATGTGGAGCTACTAAATTTGCTTCTCAAGCCATCGACAATTTTGTGTTGATAATAAGAATCCAGGTTTATTTGCTTGCTCCTGTAGTATATGCACTTAAATACTCTTATGTACATAACTCAATTTCAACTTTTCTTGCTGAGAATAGCTCGTTGCCTTCTTCTTCTCTTTGAGGCAGTGGTAAATGATAATTCCTTGCTTTGACTACTTACACGGGTCTATAGTATATGGATAAGGTTGAGTGTCTTACCCTGGTAACACTGTTGATACGATCCACTTTGTAATTGTTATAAATGATTTGATTCAAATCGTTCATGTGGAGACATGTAAGTGGGAGTATCCTATACAATAAGTTTATTAAAGGCTGGACTAAGAAATATTTAATCTCTCGTTATAAATCCGTTAATTGAGAAGATTAATATTTCACATGATGATCATATGCAACCCGATCTTAATCCTAAGTGAATTATGAACCCCGGCTGGTGAGGCTTATCCTTTAATATATATATTTTTTTAATATGACCATGTCTGTTGGGATATTGCAATTGTGTCTTTCTTGTGTGTTCACTGCTGCTCTTTGTATGTTAAGCTACTTACATTTGTTAAGTGAATGTTTGCGTTGTTTTATTTAACTATTCTTTTTCATGGAGTAGCTTTTCTGCCGTTGTTTCTCAAGGAAAGCTCCATTTAAAATGCAGGTAGCCAACCAATCTTTGAAGTTCTGTCCTGAAGCAATAAACTTTCCCCAAGCTCTGTTGACCACCGCTGCTGGTAGAACTGGTCATCATCCTCTCAAAATCCTCAGGTATACCGAAATGTTCACACCATTATTGTTTGGTTGTCTTTCGTCCTCTGTCCAATTATTTCCATTTGTTTATAACTATTGCAAATGACCACGGATACCCATTTGTTTTTTAGCAGATCTGCCATCTAGTGGATTTACGAACACTTGGGCAGTTGCTGCGTATACAGAATCCTACAAACGAGATTACCCCCCCTGGAATTATTCTTTATACTGGATTTGACCGACAACTACAGGTACCTTTGTGTGTGTGAAAAGGTTCTAAACTACTCCAAATGAAAAAGAAGTGGTCAAACACTTCGTTGTTGATGGACAAAAGAGATTCGATTGGATTCGATAGAACACTCCCTTTGTTGATGAGTCGGGGAAAAAAAACACCATCCCTCATCATCCTATCTCGAACCAAACACAAACCAAACACTTCTTGGGGAAGGAACAATGAATGAACTGCTGGGATTATGTGAGATCCCACATCAAGTTGGAGAGGAGAATGAAACATTCTTTATTAAGGGTGTGGAAACTTCTCCGTAACATACGCGTTTTAAAAATCTTGAGGGGTAAGTCCGAAAGAAAAAACTCAAAAAGGATAATATCTGCTAACGGTAGGCATAGGCTATTACAAATGGTATTAGAGTCAGACACCGAGCAATATGCCAACAAGGAAGCTGAAGCCCGAAGGGGGTAGACACGAGGCAGTGTGCCAGCAAGGACACTAGGCCCTGAAAGGGAGGTGGATTGGGGAGTCCCACATCGATTGGAGAAGGGAACGAGTGCCAGCGAAGACGCTGGGCCTCGAAGGGGGGTAGATTGTGAGATCCCATATCGGTTGGGGATGAGAACAAATTATTCGTTATAAGGGTCTGAAAACCTCTCTCTAGCATACGCGTTTTAAAAATCCTGAAGGAAGCCGTAAGAAAAAGTCCAAAGAAGACAATATTTGTTAGAAGTGGATTTTGGCTGTTGCAATTCTTCTCTACTATAATAGATATGTGCATTGTAGCAAAAGAATAATAGTTCGTGATAATATATATACACACATATCAGATAATGAATATTTTATGCATTCAACAAGGATAATATCAATTCCACATCTTCCAACAATAGATGAAGGTTTGATCATTGAAACCACAGTGCTGGGTTGCAATTTATTGTTCCTAATTCTTCCACAGGTTCGTTAGGGGCAGAGACTATGATCCAGATCGCGAACGAGCTGAAAAAAGAATGCTGCAGAAACTTCTAAAGCGTGAAGCTAAAGGAGCAGCCCATGAGCTAAGGTGCAGAAAGTTTTATTCATATTTATTATGTTTGTTTCTCATCCCGTTCATTGAATTGCTTCACAAGTTTGAAGCCTCTCTGTGGTTTAAGCCATTTCTAACTAAATTTAAACTCGAATCATTTTTCTGTCTCATACATTCAATAGTTTTGCGACACGGCGACTCCACCTTACATAG

mRNA sequence

ATGGGACGAAGAGCTTGGGAATTTGACGAGGCTATTTTACGTTCGCAGTGCGAATGGAAGGTAGCCAACCAATCTTTGAAGTTCTGTCCTGAAGCAATAAACTTTCCCCAAGCTCTGTTGACCACCGCTGCTGGTAGAACTGGTCATCATCCTCTCAAAATCCTCAGTTGCTGCGTATACAGAATCCTACAAACGAGATTACCCCCCCTGGAATTATTCTTTATACTGGATTTGACCGACAACTACAGGTTCGTTAGGGGCAGAGACTATGATCCAGATCGCGAACGAGCTGAAAAAAGAATGCTGCAGAAACTTCTAAAGCGTGAAGCTAAAGGAGCAGCCCATGAGCTAAGTTTTGCGACACGGCGACTCCACCTTACATAG

Coding sequence (CDS)

ATGGGACGAAGAGCTTGGGAATTTGACGAGGCTATTTTACGTTCGCAGTGCGAATGGAAGGTAGCCAACCAATCTTTGAAGTTCTGTCCTGAAGCAATAAACTTTCCCCAAGCTCTGTTGACCACCGCTGCTGGTAGAACTGGTCATCATCCTCTCAAAATCCTCAGTTGCTGCGTATACAGAATCCTACAAACGAGATTACCCCCCCTGGAATTATTCTTTATACTGGATTTGACCGACAACTACAGGTTCGTTAGGGGCAGAGACTATGATCCAGATCGCGAACGAGCTGAAAAAAGAATGCTGCAGAAACTTCTAAAGCGTGAAGCTAAAGGAGCAGCCCATGAGCTAAGTTTTGCGACACGGCGACTCCACCTTACATAG

Protein sequence

MGRRAWEFDEAILRSQCEWKVANQSLKFCPEAINFPQALLTTAAGRTGHHPLKILSCCVYRILQTRLPPLELFFILDLTDNYRFVRGRDYDPDRERAEKRMLQKLLKREAKGAAHELSFATRRLHLT
Homology
[Close]
BLAST of CmaCh12G004510 vs. ExPASy TrEMBL
Match: A0A6J1KKX6 (abscisic acid 8'-hydroxylase 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496178 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.2e-40
Identity = 91/118 (77.12%), Postives = 91/118 (77.12%), Query Frame = 0 

Query: 1   MGRRAWEFDEAILRSQCEWKVANQSLKFCPEAINFPQALLTTAAGRTGHHPLKILSCCVY 60
           MGRRAWEFDEAILRSQCEWKVANQSLKFCPEAINFPQALLTTAAGRTGHHPLKIL     
Sbjct: 1   MGRRAWEFDEAILRSQCEWKVANQSLKFCPEAINFPQALLTTAAGRTGHHPLKIL----- 60

Query: 61  RILQTRLPPLELFFILDLTDNYRFVRGRDYDPDRERAEKRMLQKLLKREAKGAAHELS 119
                                 RFVRGRDYDPDRERAEKRMLQKLLKREAKGAAHELS
Sbjct: 61  ----------------------RFVRGRDYDPDRERAEKRMLQKLLKREAKGAAHELS 91

[Close]
BLAST of CmaCh12G004510 vs. ExPASy TrEMBL
Match: A0A6A6M806 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_011888 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 57/116 (49.14%), Postives = 68/116 (58.62%), Query Frame = 0 

Query: 21  VANQSLKFCPEAINFPQALLTTAAGR--TGHH--------PLKILSCCVY-RILQTRLPP 80
           V  QS KFCPEAI F Q+LL TA  R    +H         LK L   ++ R     + P
Sbjct: 719 VVKQSKKFCPEAIMFLQSLLMTAIERKQASYHESQFYHLVELKALGPVLFIRHCVNEISP 778

Query: 81  LELFFILDL--------TDNYRFVRGRDYDPDRERAEKRMLQKLLKREAKGAAHEL 118
           L  F I+D+        +DN+ FV+GRDYDPDRERAE R L+K LKREAKGAA EL
Sbjct: 779 LNFFMIMDMPEDSAFLSSDNFSFVKGRDYDPDRERAEGRKLKKQLKREAKGAAREL 834

[Close]
BLAST of CmaCh12G004510 vs. ExPASy TrEMBL
Match: A0A2G2YCZ5 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_27103 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-09
Identity = 49/115 (42.61%), Postives = 57/115 (49.57%), Query Frame = 0 

Query: 21  VANQSLKFCPEAINFPQALLTTAAGRTGHHPL-------------KILSCCVYRILQTRL 80
           V  QS KFCPEAI F Q LL  A  R                    +L  C        L
Sbjct: 107 VTKQSQKFCPEAIVFLQTLLMAALDREQRFKNLQLNDLMEIKELGPLLCICSSNAEMGSL 166

Query: 81  PPLELFFILDL--------TDNYRFVRGRDYDPDRERAEKRMLQKLLKREAKGAA 115
             LEL   +DL        +DNY +V+GRDYDPDRERAEK+ L+K +K EAKG A
Sbjct: 167 DSLEL---MDLPEDSQYFDSDNYSYVKGRDYDPDRERAEKKKLKKRIKEEAKGVA 218

[Close]
BLAST of CmaCh12G004510 vs. ExPASy TrEMBL
Match: A0A6J1GHX5 (nucleolar protein 14 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454318 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 8.4e-08
Identity = 64/210 (30.48%), Postives = 78/210 (37.14%), Query Frame = 0 

Query: 21  VANQSLKFCPEAINFPQALLTTAAGR---TGHHPLKILSC----CVYRILQTRLP----- 80
           VA QSLKFCPEAINF Q LL  AAGR      +P +I +      + ++L+ + P     
Sbjct: 681 VAKQSLKFCPEAINFLQTLLIAAAGRRSLPSQNPQQICNLVDLHALGQLLRIQNPTNEIT 740

Query: 81  PLELFFILDLT--------DNYR------------------------------------- 118
           PL+ FF+++LT        D+YR                                     
Sbjct: 741 PLDFFFMMNLTEHSSIFSSDSYRAGVLLTVIETLDGFVNVYGQLKSFPEIFMPFSTILHE 800

[Close]
BLAST of CmaCh12G004510 vs. ExPASy TrEMBL
Match: A0A4S8IMA7 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb06t01580 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 51/144 (35.42%), Postives = 69/144 (47.92%), Query Frame = 0 

Query: 19  WKVANQSLKFCPEAINFPQALLTTA----AGRTGHHPL------KILSCCVYRILQT-RL 78
           + V  QS KFCPEAI + Q LLT++     G   H  L      ++L   ++   QT  +
Sbjct: 677 FSVCKQSQKFCPEAIIYLQTLLTSSIELKLGLQQHSQLNHLMEIRVLKPWLHITDQTCAI 736

Query: 79  PPLELFFILDL--------TDNYR--------------------------FVRGRDYDPD 118
            PL+ F ++++        TD +R                          FV+GRDYDPD
Sbjct: 737 HPLDFFAVMEMHEESPFFATDTFRQVQGLLRDKMQDVLDLIKKKTDEHHIFVKGRDYDPD 796

[Close]
BLAST of CmaCh12G004510 vs. NCBI nr
Match: XP_023002296.1 (abscisic acid 8'-hydroxylase 1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 174.9 bits (442), Expect = 4.5e-40
Identity = 91/118 (77.12%), Postives = 91/118 (77.12%), Query Frame = 0 

Query: 1   MGRRAWEFDEAILRSQCEWKVANQSLKFCPEAINFPQALLTTAAGRTGHHPLKILSCCVY 60
           MGRRAWEFDEAILRSQCEWKVANQSLKFCPEAINFPQALLTTAAGRTGHHPLKIL     
Sbjct: 1   MGRRAWEFDEAILRSQCEWKVANQSLKFCPEAINFPQALLTTAAGRTGHHPLKIL----- 60

Query: 61  RILQTRLPPLELFFILDLTDNYRFVRGRDYDPDRERAEKRMLQKLLKREAKGAAHELS 119
                                 RFVRGRDYDPDRERAEKRMLQKLLKREAKGAAHELS
Sbjct: 61  ----------------------RFVRGRDYDPDRERAEKRMLQKLLKREAKGAAHELS 91

[Close]
BLAST of CmaCh12G004510 vs. NCBI nr
Match: KAF2308658.1 (hypothetical protein GH714_011888 [Hevea brasiliensis])

HSP 1 Score: 89.0 bits (219), Expect = 3.3e-14
Identity = 57/116 (49.14%), Postives = 68/116 (58.62%), Query Frame = 0 

Query: 21  VANQSLKFCPEAINFPQALLTTAAGR--TGHH--------PLKILSCCVY-RILQTRLPP 80
           V  QS KFCPEAI F Q+LL TA  R    +H         LK L   ++ R     + P
Sbjct: 719 VVKQSKKFCPEAIMFLQSLLMTAIERKQASYHESQFYHLVELKALGPVLFIRHCVNEISP 778

Query: 81  LELFFILDL--------TDNYRFVRGRDYDPDRERAEKRMLQKLLKREAKGAAHEL 118
           L  F I+D+        +DN+ FV+GRDYDPDRERAE R L+K LKREAKGAA EL
Sbjct: 779 LNFFMIMDMPEDSAFLSSDNFSFVKGRDYDPDRERAEGRKLKKQLKREAKGAAREL 834

[Close]
BLAST of CmaCh12G004510 vs. NCBI nr
Match: KAF3650087.1 (hypothetical protein FXO37_18630 [Capsicum annuum])

HSP 1 Score: 76.3 bits (186), Expect = 2.2e-10
Identity = 55/135 (40.74%), Postives = 66/135 (48.89%), Query Frame = 0 

Query: 3   RRAWEFDEAILR--SQCEWKVANQSLKFCPEAINFPQALLTTAAGRTGHHPL-------- 62
           +R    DEA+ +  S C   V  QS KFCPEAI F Q LL  A  R              
Sbjct: 53  KRVCYTDEALHKTDSPCRKSVTKQSQKFCPEAIVFLQTLLMAALDREQRFENLQLNDLME 112

Query: 63  -----KILSCCVYRILQTRLPPLELFFILDL--------TDNYRFVRGRDYDPDRERAEK 115
                 +L  C        L  LEL   +DL        +DNY +V+GRDYDPDRERAEK
Sbjct: 113 IKELGPLLCICSSNAEMGSLDSLEL---MDLPEDSHYFDSDNYSYVKGRDYDPDRERAEK 172

[Close]
BLAST of CmaCh12G004510 vs. NCBI nr
Match: PHT67616.1 (hypothetical protein T459_27103 [Capsicum annuum])

HSP 1 Score: 71.2 bits (173), Expect = 7.0e-09
Identity = 49/115 (42.61%), Postives = 57/115 (49.57%), Query Frame = 0 

Query: 21  VANQSLKFCPEAINFPQALLTTAAGRTGHHPL-------------KILSCCVYRILQTRL 80
           V  QS KFCPEAI F Q LL  A  R                    +L  C        L
Sbjct: 107 VTKQSQKFCPEAIVFLQTLLMAALDREQRFKNLQLNDLMEIKELGPLLCICSSNAEMGSL 166

Query: 81  PPLELFFILDL--------TDNYRFVRGRDYDPDRERAEKRMLQKLLKREAKGAA 115
             LEL   +DL        +DNY +V+GRDYDPDRERAEK+ L+K +K EAKG A
Sbjct: 167 DSLEL---MDLPEDSQYFDSDNYSYVKGRDYDPDRERAEKKKLKKRIKEEAKGVA 218

[Close]
BLAST of CmaCh12G004510 vs. NCBI nr
Match: KAG6585579.1 (Abscisic acid 8'-hydroxylase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-08
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 0 

Query: 84  FVRGRDYDPDRERAEKRMLQKLLKREAKGAAHELS 119
           FVRGRDYDPDRERAEKR LQKLLKREAKGAAHELS
Sbjct: 61  FVRGRDYDPDRERAEKRKLQKLLKREAKGAAHELS 95

The following BLAST results are available for this feature:
BLAST of CmaCh12G004510 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh12G004510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KKX62.2e-4077.12abscisic acid 8'-hydroxylase 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6A6M8061.6e-1449.14Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_011888 PE=3 SV=1[more]
A0A2G2YCZ53.4e-0942.61Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_27103 PE=3 SV=1[more]
A0A6J1GHX58.4e-0830.48nucleolar protein 14 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454318 PE... [more]
A0A4S8IMA71.4e-0735.42Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb06t01580 PE=3 SV=... [more]
BLAST of CmaCh12G004510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023002296.14.5e-4077.12abscisic acid 8'-hydroxylase 1 isoform X1 [Cucurbita maxima][more]
KAF2308658.13.3e-1449.14hypothetical protein GH714_011888 [Hevea brasiliensis][more]
KAF3650087.12.2e-1040.74hypothetical protein FXO37_18630 [Capsicum annuum][more]
PHT67616.17.0e-0942.61hypothetical protein T459_27103 [Capsicum annuum][more]
KAG6585579.13.5e-0897.14Abscisic acid 8'-hydroxylase 1, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmaCh12G004510 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G004510.1CmaCh12G004510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity