CmaCh12G001700 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh12G001700
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	cytochrome c oxidase subunit 6b-1-like
Location	Cma_Chr12: 749111 .. 752069 (+)
RNA-Seq Expression	CmaCh12G001700
Synteny	CmaCh12G001700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGCGCAGAGCGAAAAAGCCCCGTCCTTAGCTGAGGTTTTTTTAATTTTTTTAATTTTTTTTTTACAGCTTTTTTAAGAGTCTCGAATTTCTTCGTAAATCCTAAATCTTTGTTTTAGCTTCGTTTTTCCTTCTTTTTTGCAATCTAGATAGATTTAGGATTGATTTTGATAGATCGAATGTTATACAGCAGGAATTCTTCAATTATGAAGATACGTGGTGTTTTTTTCTGCTGTAAATTCGAACTTCTTAGTGTTGAGGAAATAATTGAAGAACGGTAGTAAATTCTCTGGGTTAGATCCCCCGGTTCCATATGAAATAATACTGAGTTTTTTTAGCATGATTGGATTTCCAGGTTGTTCACCTTCGAGTTCTGGTGGGTTTAATTTACTGTCTTTTTATTATTTTCTGTTAAAAGATCAATGTGTTTCCCCAAGTTTGAAAGATCTTTATCAACGACTCAACCTTCTGCCTGATTTTGCATTGGAATGGAAGCTGAGAATCGTTTCTTGATTTAGTTAATGGCTTCACCTAACTGCTCTGTAGAAAAGAGAGAAGAAAATAATCGGGCTTGAGCTGCTTGGTTTACGAGAGGAATCACAATGAATTCAAAGTTAATATGACATCTCACCTCGGTTGGAAAGGAGAACAAATCATTCTTTATAAGGGTGTGGAAACCTCTCCCTATAGATGCATTTTAAAACCGTGAGAATGAATCAATACATGGCCGAAGTGGACAATATTTGCTTGCGGTGGGCTTGAGGTGTTACAAATGGTATCAGAGCTAGGCACCAATGGTTTGCCAGCGAGAATGTTGGGTCCCAAAGGTCCCAAAGGAAGGTGGATTGTGAGATCCCACATTGGTTGGGGAGGGGAATGAAACATTCTTTATAAGAGTGTGGAAACCTCTCTGTAGTAGACACAATTTAAAATCTTAATGCTGACGGAGATATGTAACGGACTGTAGCGGACAATATTCGTTAGTGATGGGCTTGGGCTGTTACATCGGATTTTTGTGTAATGATTTGTCATTCTCATCTAGAGGAACATTTCATAAAAAATATTTGAGAATTGGGGATAACCTTCTGTTAATTTGGCTTTCAGCAATATTCCTTGGAAGATAAAGTGGAGAAGGTGGATATAGCAGAGCCCTCTGAAGTAAAAGAGGTAGAGAACTCAGAAAATGTTCCTCCTCCTGCAGAAGTTGTTGTTAAGAATGACGACCCACCTGTTGAAGCCGATGCTGCCGGTCAAGGCGGTGACAACACTCCTGTTGACGAAAACAATGAAGATGCATCAGCAGCTGCTGCTGCTGCTGCTGAGCAAGGAAGCAGCGGAGCTGGAGAAGAGGAAAATTCTGGTGAGCAAGAAAGCAGCAATGAAGCACCTGAGATTAAGGTTGTTGCTGTCACTGATGATCAACAATGCTATCGTTCGTTTTTTAATTCATGACATTATTAAGGCATCTCTTAGTTTGTTTGTTCATTATTTGGTTTGCTCATTTGCAGCTTGAAACAGCTCCAGCAGATTTCCGGTTCCCTACTACAAATCAAACTAGGCATTGCTTCACTCGCTATATTGAGTACCATAGGTAATTTTTAGTGTTCTTTTCTTCATTTCTTGTCTCTTCTTAGGCCTTATTAGCTTCTGAATCTTGAGAATTAAGCTTATAATTGCTAGTGTTAAGCCTGTAGATTTCTGTCTTTGCTGTTGCTATTGTTTTGGTTTAAGAATTGAAATGTTTCTTAAAAGTCGAAAACAGGCAAATGTACATCTTTGCTATTGGCTTGACCAGAATTCAAATGTTTCTTAAATCTTGAAAACAAGGCAAATGTATGTCTTTGCCATTGTTTTGTCCATGAATTCAGATGTTTCTTAAAATTTGAACACAAGGCAATTGTATATCTTTGCTATTGTTTTGGCCAAGGATTCAAATGTTTCTTAAACGTCGACAACAAGGTAAATGTACGTCGTTGCTATTCTTTTTGTCAAGAATTCATGTGTTTCTTAAACATCAAAAACAAGGTAAATGTACGTCTTTTCTATTGTTTTGACCCAGAATTCATATGGTTAGCTGAAGCTTCTTTGTGATGCGTACAGATGCATACAAGCGAAAGGGGAAGGTGCTCCAGAGTGTGACAAATTTGCAAAATACTATCGTTCTCTATGCCCAAGTGAATGGGTATGCTTTCAAATGACACGATGTGTGTGCGCGTGCGTGTTTCATTTCATTACTAAAGCTGTGTGTTTTGTGATAATTGTTGCAGGTAGAGAGGTGGAATGAGCAAAGGGAGAACGGCACCTTCCCAGGTCCGCTGTAGGAGTTAAGCCACACATGCTGCCCTCAAATTCCAAATAAACTCTCTCAAACAATTGAGTTCATAATTTTCGGCTGGTTTTTGGTCTTTTATTCAAAATCCATTTGCAACCAAGCTTGTAAGCTACGCCCCCCATGTTTCTTCAATGTTTATGTTCTAATCCAATAAGACAATGAAGAAATTAAAAGTTCAAACTCAATTTGATTGGAAGAATCGATGAACTGCGCAAATGAATTTCACAAACGATGAACTTCAAAGTTAAATAAGATTTGTGTTTATAGTCGCAAAAAGCTCAATTTTTACACATCGATTGAGATTGGAGCACAGGAAAAATATTATATTGATGATGCATTGAGTAACTTGGGAAGCTGGTTAAGCTCTTTCCCCACGAATTCTTCTGGCAAGTTGAATATCTTTCGGCATTATTGTAACGCGCTTGGCATGAATGGCGCAGAGGTTGGTGTCTTCGAACAGCCCAACCAGGTAAGCTTCAGCCGCCTCTTGCAAAGCCAAAACCGCGTGGCTTTGGAACCGCAGATCTGTCTTGAAATCCTGTGCAATTTCACGAACAAGCCTCTGGAATGGGAGCTTGCGAATTAGAAGCTCTGTGCTCTTCTGGTACTTACGAATTTCTC

mRNA sequence

ATGGCGGAAGCGCAGAGCGAAAAAGCCCCGTCCTTAGCTGAGCAATATTCCTTGGAAGATAAAGTGGAGAAGGTGGATATAGCAGAGCCCTCTGAAGTAAAAGAGGTAGAGAACTCAGAAAATGTTCCTCCTCCTGCAGAAGTTGTTGTTAAGAATGACGACCCACCTGTTGAAGCCGATGCTGCCGGTCAAGGCGGTGACAACACTCCTGTTGACGAAAACAATGAAGATGCATCAGCAGCTGCTGCTGCTGCTGCTGAGCAAGGAAGCAGCGGAGCTGGAGAAGAGGAAAATTCTGGTGAGCAAGAAAGCAGCAATGAAGCACCTGAGATTAAGCTTGAAACAGCTCCAGCAGATTTCCGGTTCCCTACTACAAATCAAACTAGGCATTGCTTCACTCGCTATATTGAGTACCATAGATGCATACAAGCGAAAGGGGAAGGTGCTCCAGAGTGTGACAAATTTGCAAAATACTATCGTTCTCTATGCCCAAGTGAATGGGTAGAGAGGTGGAATGAGCAAAGGGAGAACGGCACCTTCCCAGGTCCGCTGTAGGAGTTAAGCCACACATGCTGCCCTCAAATTCCAAATAAACTCTCTCAAACAATTGAGTTCATAATTTTCGGCTGGTTTTTGGTCTTTTATTCAAAATCCATTTGCAACCAAGCTTGTAAGCTACGCCCCCCATGTTTCTTCAATGTTTATGTTCTAATCCAATAAGACAATGAAGAAATTAAAAGTTCAAACTCAATTTGATTGGAAGAATCGATGAACTGCGCAAATGAATTTCACAAACGATGAACTTCAAAGTTAAATAAGATTTGTGTTTATAGTCGCAAAAAGCTCAATTTTTACACATCGATTGAGATTGGAGCACAGGAAAAATATTATATTGATGATGCATTGAGTAACTTGGGAAGCTGGTTAAGCTCTTTCCCCACGAATTCTTCTGGCAAGTTGAATATCTTTCGGCATTATTGTAACGCGCTTGGCATGAATGGCGCAGAGGTTGGTGTCTTCGAACAGCCCAACCAGGTAAGCTTCAGCCGCCTCTTGCAAAGCCAAAACCGCGTGGCTTTGGAACCGCAGATCTGTCTTGAAATCCTGTGCAATTTCACGAACAAGCCTCTGGAATGGGAGCTTGCGAATTAGAAGCTCTGTGCTCTTCTGGTACTTACGAATTTCTC

Coding sequence (CDS)

ATGGCGGAAGCGCAGAGCGAAAAAGCCCCGTCCTTAGCTGAGCAATATTCCTTGGAAGATAAAGTGGAGAAGGTGGATATAGCAGAGCCCTCTGAAGTAAAAGAGGTAGAGAACTCAGAAAATGTTCCTCCTCCTGCAGAAGTTGTTGTTAAGAATGACGACCCACCTGTTGAAGCCGATGCTGCCGGTCAAGGCGGTGACAACACTCCTGTTGACGAAAACAATGAAGATGCATCAGCAGCTGCTGCTGCTGCTGCTGAGCAAGGAAGCAGCGGAGCTGGAGAAGAGGAAAATTCTGGTGAGCAAGAAAGCAGCAATGAAGCACCTGAGATTAAGCTTGAAACAGCTCCAGCAGATTTCCGGTTCCCTACTACAAATCAAACTAGGCATTGCTTCACTCGCTATATTGAGTACCATAGATGCATACAAGCGAAAGGGGAAGGTGCTCCAGAGTGTGACAAATTTGCAAAATACTATCGTTCTCTATGCCCAAGTGAATGGGTAGAGAGGTGGAATGAGCAAAGGGAGAACGGCACCTTCCCAGGTCCGCTGTAG

Protein sequence

MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEADAAGQGGDNTPVDENNEDASAAAAAAAEQGSSGAGEEENSGEQESSNEAPEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTFPGPL

Homology

[Close]

BLAST of CmaCh12G001700 vs. ExPASy Swiss-Prot
Match: Q9S7L9 (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.2e-44
Identity = 109/192 (56.77%), Postives = 134/192 (69.79%), Query Frame = 0


Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVV---VKNDDPPV 60
           MA+A + + PSL+EQY LE +V++   A+P EVKEV  +  V   AE V      ++ PV
Sbjct: 1   MADAVNAQTPSLSEQYHLEKEVKQDTSAKPVEVKEV--APEVTTQAEEVKTEQAKEESPV 60

Query: 61  EADAAGQGGDNTPVDENNEDASAAAAAA---AEQGSSGAGE--EENSGEQESSNEAPEIK 120
           E   +     +    E+ E AS A AAA   AE+  + A E  +EN+ E+ +     EIK
Sbjct: 61  EEAVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENNDENASEEVAEETPDEIK 120

Query: 121 LETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWN 180
           LETAPADFRFPTTNQTRHCFTRY+EYHRC+ AKG+ APECDKFAK+YRSLCPSEWV+RWN
Sbjct: 121 LETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDRWN 180

Query: 181 EQRENGTFPGPL 185
           EQRENGTFPGPL
Sbjct: 181 EQRENGTFPGPL 190

[Close]

BLAST of CmaCh12G001700 vs. ExPASy Swiss-Prot
Match: Q9SUD3 (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=2 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 2.5e-34
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 110 EIKLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVE 169
           EI+L+TAPADFRFPTTNQTRHCFTRYIE+HRC  AKGE A EC++FAKYYR+LCP EWV+
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63

Query: 170 RWNEQRENGTFPGPL 185
           +WNEQRE GTFPGPL
Sbjct: 64  KWNEQRETGTFPGPL 78

[Close]

BLAST of CmaCh12G001700 vs. ExPASy Swiss-Prot
Match: Q945L0 (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-33
Identity = 59/75 (78.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 110 EIKLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVE 169
           EI+L+TAPADFRFPTTNQTRHCFTRYIE+HRC  AKGE + +C++FAKYYR+LCP EWV+
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63

Query: 170 RWNEQRENGTFPGPL 185
           +WNEQRE+GTFPGPL
Sbjct: 64  KWNEQRESGTFPGPL 78

[Close]

BLAST of CmaCh12G001700 vs. ExPASy Swiss-Prot
Match: O94581 (Cytochrome c oxidase subunit 12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox12 PE=3 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 7.6e-23
Identity = 48/84 (57.14%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 101 EQESSNEAPEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYR 160
           EQE      +    T   D RFP TNQT+HCF  YI+Y RCI+AKGE    C +F   Y+
Sbjct: 3   EQEDQEAPKQFTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQ 62

Query: 161 SLCPSEWVERWNEQRENGTFPGPL 185
           SLCP EWVERW+EQRENGTFP P+
Sbjct: 63  SLCPMEWVERWDEQRENGTFPAPI 86

[Close]

BLAST of CmaCh12G001700 vs. ExPASy Swiss-Prot
Match: Q1K8U2 (Cytochrome c oxidase subunit 12, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=cox-13 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.6e-18
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 119 DFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENG 178
           D RFP  NQT+HC+  Y++YH+CI AKGE    C +F   YRSLCPS W +RW+EQRE G
Sbjct: 18  DARFPNVNQTKHCWQNYVDYHKCILAKGEDFAPCRQFWLAYRSLCPSGWYQRWDEQREAG 77

Query: 179 TFP 182
            FP
Sbjct: 78  NFP 80

[Close]

BLAST of CmaCh12G001700 vs. ExPASy TrEMBL
Match: A0A6J1KUF2 (cytochrome c oxidase subunit 6b-1-like OS=Cucurbita maxima OX=3661 GN=LOC111496501 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.5e-95
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60
           MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD
Sbjct: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60

Query: 61  AAGQGGDNTPVDENNEDASAAAAAAAEQGSSGAGEEENSGEQESSNEAPEIKLETAPADF 120
           AAGQGGDNTPVDENNEDASAAAAAAAEQGSSGAGEEENSGEQESSNEAPEIKLETAPADF
Sbjct: 61  AAGQGGDNTPVDENNEDASAAAAAAAEQGSSGAGEEENSGEQESSNEAPEIKLETAPADF 120

Query: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF 180
           RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF
Sbjct: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF 180

Query: 181 PGPL 185
           PGPL
Sbjct: 181 PGPL 184

[Close]

BLAST of CmaCh12G001700 vs. ExPASy TrEMBL
Match: A0A6J1GI67 (cytochrome c oxidase subunit 6b-1-like OS=Cucurbita moschata OX=3662 GN=LOC111454374 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 8.2e-89
Identity = 175/184 (95.11%), Postives = 178/184 (96.74%), Query Frame = 0


Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60
           MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD
Sbjct: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60

Query: 61  AAGQGGDNTPVDENNEDASAAAAAAAEQGSSGAGEEENSGEQESSNEAPEIKLETAPADF 120
           AA QGGDNTPVDENNEDAS   AAAAEQ SSGA +EENSG+QESSNEAPEIKLETAPADF
Sbjct: 61  AADQGGDNTPVDENNEDAS---AAAAEQESSGARDEENSGDQESSNEAPEIKLETAPADF 120

Query: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF 180
           RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCP+EWVERWNEQRENGTF
Sbjct: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTF 180

Query: 181 PGPL 185
           PGPL
Sbjct: 181 PGPL 181

[Close]

BLAST of CmaCh12G001700 vs. ExPASy TrEMBL
Match: A0A6J1KAZ5 (cytochrome c oxidase subunit 6b-1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492226 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.2e-71
Identity = 147/184 (79.89%), Postives = 162/184 (88.04%), Query Frame = 0


Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60
           MAEAQSEK PSL+EQYSL++K EKVDI +PSEVKEVENSEN   PAE+VVKND+PPVEAD
Sbjct: 1   MAEAQSEKPPSLSEQYSLKEKEEKVDILKPSEVKEVENSENA-APAEIVVKNDEPPVEAD 60

Query: 61  AAGQGGDNTPVDENNEDASAAAAAAAEQGSSGAGEEENSGEQESSNEAPEIKLETAPADF 120
            A +G +N P DENN DASAAAA    + ++ AGEEE SG+QES++E PEIKLETAPADF
Sbjct: 61  -ADKGSNNPPADENNGDASAAAAVEDSETNAAAGEEEISGDQESTDEQPEIKLETAPADF 120

Query: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF 180
           RFPTTNQTRHCFTRYIEYHRC QAKGEGAPECDKFAKYYRSLCPSEWVE+WNEQRENG F
Sbjct: 121 RFPTTNQTRHCFTRYIEYHRCTQAKGEGAPECDKFAKYYRSLCPSEWVEKWNEQRENGCF 180

Query: 181 PGPL 185
           PGPL
Sbjct: 181 PGPL 182

[Close]

BLAST of CmaCh12G001700 vs. ExPASy TrEMBL
Match: A0A6J1HH76 (cytochrome c oxidase subunit 6b-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462906 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.7e-70
Identity = 146/184 (79.35%), Postives = 161/184 (87.50%), Query Frame = 0


Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60
           MAEAQSEK PSL+EQYSL++K EKVDI +PSEV+EVENSEN   PAEVVVKND+PPVEAD
Sbjct: 1   MAEAQSEKPPSLSEQYSLKEKEEKVDIPKPSEVEEVENSENA-VPAEVVVKNDEPPVEAD 60

Query: 61  AAGQGGDNTPVDENNEDASAAAAAAAEQGSSGAGEEENSGEQESSNEAPEIKLETAPADF 120
            A QG +N P D NN DASAAAA    + ++ AGEEE SG+QES++E PEIKLETAPADF
Sbjct: 61  -ADQGSNNPPADVNNGDASAAAAVEDSETNAAAGEEEISGDQESTDERPEIKLETAPADF 120

Query: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF 180
           RFPTTNQTRHCFTRYIEYHRC QAKGEGAPECDKFAKYYRSLCP+EWVE+WNEQRENG F
Sbjct: 121 RFPTTNQTRHCFTRYIEYHRCTQAKGEGAPECDKFAKYYRSLCPNEWVEKWNEQRENGCF 180

Query: 181 PGPL 185
           PGPL
Sbjct: 181 PGPL 182

[Close]

BLAST of CmaCh12G001700 vs. ExPASy TrEMBL
Match: A0A0A0LNV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369100 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.5e-69
Identity = 146/197 (74.11%), Postives = 164/197 (83.25%), Query Frame = 0


Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60
           MAEAQS++ PSL+EQYSL++K EKVDI +PSEVKEVENSEN   PAEVVVKND+PPVEA 
Sbjct: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENA-APAEVVVKNDEPPVEA- 60

Query: 61  AAGQGGDNTPVDENNEDASAAA-------------AAAAEQGSSGAGEEENSGEQESSNE 120
            A Q  D  P +E+N D+SAAA             + AAE+ SSGAGEEENSG+QES++E
Sbjct: 61  VADQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDE 120

Query: 121 APEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEW 180
            PEIKLETAP DFRFPTTNQTRHCFTRYIE+HRC QAKGEGAPEC+KFAKYYRSLCPSEW
Sbjct: 121 RPEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEW 180

Query: 181 VERWNEQRENGTFPGPL 185
           VE+WNEQRENGTFPGPL
Sbjct: 181 VEKWNEQRENGTFPGPL 195

[Close]

BLAST of CmaCh12G001700 vs. NCBI nr
Match: XP_023002728.1 (cytochrome c oxidase subunit 6b-1-like [Cucurbita maxima])

HSP 1 Score: 357.5 bits (916), Expect = 7.1e-95
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60
           MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD
Sbjct: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60

Query: 61  AAGQGGDNTPVDENNEDASAAAAAAAEQGSSGAGEEENSGEQESSNEAPEIKLETAPADF 120
           AAGQGGDNTPVDENNEDASAAAAAAAEQGSSGAGEEENSGEQESSNEAPEIKLETAPADF
Sbjct: 61  AAGQGGDNTPVDENNEDASAAAAAAAEQGSSGAGEEENSGEQESSNEAPEIKLETAPADF 120

Query: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF 180
           RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF
Sbjct: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF 180

Query: 181 PGPL 185
           PGPL
Sbjct: 181 PGPL 184

[Close]

BLAST of CmaCh12G001700 vs. NCBI nr
Match: XP_023537220.1 (cytochrome c oxidase subunit 6b-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 341.7 bits (875), Expect = 4.0e-90
Identity = 178/184 (96.74%), Postives = 180/184 (97.83%), Query Frame = 0


Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60
           MAEAQSE APSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD
Sbjct: 1   MAEAQSENAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60

Query: 61  AAGQGGDNTPVDENNEDASAAAAAAAEQGSSGAGEEENSGEQESSNEAPEIKLETAPADF 120
           AA QGGDNTPVDENNEDAS AAAAAAEQ SSGAG+EENSG+QESSNEAPEIKLETAPADF
Sbjct: 61  AADQGGDNTPVDENNEDAS-AAAAAAEQESSGAGDEENSGDQESSNEAPEIKLETAPADF 120

Query: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF 180
           RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF
Sbjct: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF 180

Query: 181 PGPL 185
           PGPL
Sbjct: 181 PGPL 183

[Close]

BLAST of CmaCh12G001700 vs. NCBI nr
Match: KAG7020225.1 (Cytochrome c oxidase subunit 6b-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 339.3 bits (869), Expect = 2.0e-89
Identity = 176/184 (95.65%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60
           MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD
Sbjct: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60

Query: 61  AAGQGGDNTPVDENNEDASAAAAAAAEQGSSGAGEEENSGEQESSNEAPEIKLETAPADF 120
           AA QGGDNTPVDENNEDAS   AAAAEQ SSGAG+EENSG+QESSNEAPEIKLETAPADF
Sbjct: 61  AADQGGDNTPVDENNEDAS---AAAAEQESSGAGDEENSGDQESSNEAPEIKLETAPADF 120

Query: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF 180
           RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCP+EWVERWNEQRENGTF
Sbjct: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTF 180

Query: 181 PGPL 185
           PGPL
Sbjct: 181 PGPL 181

[Close]

BLAST of CmaCh12G001700 vs. NCBI nr
Match: XP_022951612.1 (cytochrome c oxidase subunit 6b-1-like [Cucurbita moschata])

HSP 1 Score: 336.3 bits (861), Expect = 1.7e-88
Identity = 175/184 (95.11%), Postives = 178/184 (96.74%), Query Frame = 0


Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60
           MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD
Sbjct: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60

Query: 61  AAGQGGDNTPVDENNEDASAAAAAAAEQGSSGAGEEENSGEQESSNEAPEIKLETAPADF 120
           AA QGGDNTPVDENNEDAS   AAAAEQ SSGA +EENSG+QESSNEAPEIKLETAPADF
Sbjct: 61  AADQGGDNTPVDENNEDAS---AAAAEQESSGARDEENSGDQESSNEAPEIKLETAPADF 120

Query: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF 180
           RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCP+EWVERWNEQRENGTF
Sbjct: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTF 180

Query: 181 PGPL 185
           PGPL
Sbjct: 181 PGPL 181

[Close]

BLAST of CmaCh12G001700 vs. NCBI nr
Match: KAG6585307.1 (Cytochrome c oxidase subunit 6b-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315.8 bits (808), Expect = 2.4e-82
Identity = 164/184 (89.13%), Postives = 166/184 (90.22%), Query Frame = 0


Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60
           MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD
Sbjct: 45  MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 104

Query: 61  AAGQGGDNTPVDENNEDASAAAAAAAEQGSSGAGEEENSGEQESSNEAPEIKLETAPADF 120
           AA QGGDNTPVDENNEDASAAAA                 +QESSNEAPEIKLETAPADF
Sbjct: 105 AADQGGDNTPVDENNEDASAAAA-----------------DQESSNEAPEIKLETAPADF 164

Query: 121 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWNEQRENGTF 180
           RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCP+EWVERWNEQRENGTF
Sbjct: 165 RFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTF 211

Query: 181 PGPL 185
           PGPL
Sbjct: 225 PGPL 211

[Close]

BLAST of CmaCh12G001700 vs. TAIR 10
Match: AT1G22450.1 (cytochrome C oxidase 6B )

HSP 1 Score: 181.0 bits (458), Expect = 8.5e-46
Identity = 109/192 (56.77%), Postives = 134/192 (69.79%), Query Frame = 0


Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVV---VKNDDPPV 60
           MA+A + + PSL+EQY LE +V++   A+P EVKEV  +  V   AE V      ++ PV
Sbjct: 1   MADAVNAQTPSLSEQYHLEKEVKQDTSAKPVEVKEV--APEVTTQAEEVKTEQAKEESPV 60

Query: 61  EADAAGQGGDNTPVDENNEDASAAAAAA---AEQGSSGAGE--EENSGEQESSNEAPEIK 120
           E   +     +    E+ E AS A AAA   AE+  + A E  +EN+ E+ +     EIK
Sbjct: 61  EEAVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENNDENASEEVAEETPDEIK 120

Query: 121 LETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVERWN 180
           LETAPADFRFPTTNQTRHCFTRY+EYHRC+ AKG+ APECDKFAK+YRSLCPSEWV+RWN
Sbjct: 121 LETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDRWN 180

Query: 181 EQRENGTFPGPL 185
           EQRENGTFPGPL
Sbjct: 181 EQRENGTFPGPL 190

[Close]

BLAST of CmaCh12G001700 vs. TAIR 10
Match: AT4G28060.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-35
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 110 EIKLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVE 169
           EI+L+TAPADFRFPTTNQTRHCFTRYIE+HRC  AKGE A EC++FAKYYR+LCP EWV+
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63

Query: 170 RWNEQRENGTFPGPL 185
           +WNEQRE GTFPGPL
Sbjct: 64  KWNEQRETGTFPGPL 78

[Close]

BLAST of CmaCh12G001700 vs. TAIR 10
Match: AT5G57815.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 144.4 bits (363), Expect = 8.8e-35
Identity = 59/75 (78.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 110 EIKLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVE 169
           EI+L+TAPADFRFPTTNQTRHCFTRYIE+HRC  AKGE + +C++FAKYYR+LCP EWV+
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63

Query: 170 RWNEQRENGTFPGPL 185
           +WNEQRE+GTFPGPL
Sbjct: 64  KWNEQRESGTFPGPL 78

[Close]

BLAST of CmaCh12G001700 vs. TAIR 10
Match: AT1G32710.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-12
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 116 APADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWVER-WNEQ 175
           A  + RFP TN+TRHCF R+++YH+CI+  G  A +C+    Y RS+CP E V + W + 
Sbjct: 59  AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSKIWLKS 118

Query: 176 REN 178
             N
Sbjct: 119 GRN 121

The following BLAST results are available for this feature:

BLAST of CmaCh12G001700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7L9	1.2e-44	56.77	Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=...	[more]
Q9SUD3	2.5e-34	81.33	Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=...	[more]
Q945L0	1.2e-33	78.67	Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=...	[more]
O94581	7.6e-23	57.14	Cytochrome c oxidase subunit 12, mitochondrial OS=Schizosaccharomyces pombe (str...	[more]
Q1K8U2	9.6e-18	58.73	Cytochrome c oxidase subunit 12, mitochondrial OS=Neurospora crassa (strain ATCC...	[more]

BLAST of CmaCh12G001700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KUF2	3.5e-95	100.00	cytochrome c oxidase subunit 6b-1-like OS=Cucurbita maxima OX=3661 GN=LOC1114965...	[more]
A0A6J1GI67	8.2e-89	95.11	cytochrome c oxidase subunit 6b-1-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1KAZ5	1.2e-71	79.89	cytochrome c oxidase subunit 6b-1-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1HH76	1.7e-70	79.35	cytochrome c oxidase subunit 6b-1-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A0A0LNV6	5.5e-69	74.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369100 PE=4 SV=1	[more]

BLAST of CmaCh12G001700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023002728.1	7.1e-95	100.00	cytochrome c oxidase subunit 6b-1-like [Cucurbita maxima]	[more]
XP_023537220.1	4.0e-90	96.74	cytochrome c oxidase subunit 6b-1-like [Cucurbita pepo subsp. pepo]	[more]
KAG7020225.1	2.0e-89	95.65	Cytochrome c oxidase subunit 6b-1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022951612.1	1.7e-88	95.11	cytochrome c oxidase subunit 6b-1-like [Cucurbita moschata]	[more]
KAG6585307.1	2.4e-82	89.13	Cytochrome c oxidase subunit 6b-1, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh12G001700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22450.1	8.5e-46	56.77	cytochrome C oxidase 6B	[more]
AT4G28060.1	1.8e-35	81.33	Cytochrome c oxidase, subunit Vib family protein	[more]
AT5G57815.1	8.8e-35	78.67	Cytochrome c oxidase, subunit Vib family protein	[more]
AT1G32710.1	2.1e-12	44.44	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 121..180 e-value: 3.0E-17 score: 62.6
IPR003213	Cytochrome c oxidase, subunit VIb	CDD	cd00926	Cyt_c_Oxidase_VIb	coord: 109..183 e-value: 1.03676E-42 score: 135.513
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	GENE3D	1.10.10.140	Cytochrome c oxidase, subunit VIb	coord: 107..184 e-value: 3.1E-34 score: 118.7
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	47694	Cytochrome c oxidase subunit h	coord: 110..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..121
None	No IPR available	PANTHER	PTHR46281:SF15	CYTOCHROME C OXIDASE, SUBUNIT VIB FAMILY PROTEIN	coord: 1..184
None	No IPR available	PANTHER	PTHR46281	CYTOCHROME C OXIDASE SUBUNIT 6B	coord: 1..184
None	No IPR available	PROSITE	PS51808	CHCH	coord: 128..171 score: 13.93189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G001700.1	CmaCh12G001700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV