CmaCh11G018990 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G018990
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-CH-type domain-containing protein
Location	Cma_Chr11: 12587588 .. 12588683 (+)
RNA-Seq Expression	CmaCh11G018990
Synteny	CmaCh11G018990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATCTGGAAAGTTTCAGAAGCAATTTGTAGACACTGAGACTTGTTGTGGGGCTGTGCCTCACTGGATAATCGCTCTCTTCCCATAAATTCTTGTCTTGTCTCTGCAACCAACAAGGGAGAAAGGCTTATTCCTTACAGTTCGTTGAAATTCCGTGTAGTTGTCAGTCTCCCTTGCTTCGTACTAAAGAAACACAACAGTCTAATTCTTCCCCATTTATCATTCATTTCCATGCTTGTTTCCAAGAACCCAGCCCAAATTACCTGGAGCTGATTCAAGCAATTGTTCTTCCATGATAAGTAAACTCGTTCGATATGATCGAACAAGAGGAAGGATCGAGTCGAACAACAAGTCCAGATGAACCCGAGATAGTTATTGTGTTGCCGACGAGACCCGAAGAAGCAAAAGAAGTACTTGCAAGATCGGAGCGGAGCCACGAGCATGAGCATGAGGGGGCTGGTAAGAGCTCTAGACAGCCTGAGAGCCAGCATACCTGCATCATTGACATAAAAAGCACTGGTGAGTCAATGGATGATGCAAATTCTAGTGATGAAAAGGTTTGCAGGATATGTCATTTGAGCTCCGACCAGTCGGTAACTTCGGACCTTGTAAACCTCGGATGTCGCTGCAAAGGCGAGCTCGGAATGTCCCACCGTGACTGCGCCGAGATTTGGTTTACGCATAGAGGCAACAGGTAAAAGATTCTCTGTTCATCATTCAGATATCAGTCATTTTGGTTTTACAACGCCAATTCAGCTTCATCTGTTTCTAATAATAGACAGTGTGAGATATGTGGTCAGACAGCTACAAACGTGAGGGGAAACAGGAGCAGCGTTTTCATGATACAGAGGAATGAAAGGAGGATGGTAGCAAGCTCAAGCGTGTCGGCAGTGTCCTTAGACAACGAGGTTTCATTATCATGTTGCTGGGGGCAGCGGTTCTGTAATTTTCTATTAACATGCACGGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGATTCAATTTCTTTTGATGATGAGTGATGGCTTTGCTCGAACATCCTATCATCACATTAACCAGCAATAAAGCCAAAAATTATATAATACTGTGTGGGTAG

mRNA sequence

AGATCTGGAAAGTTTCAGAAGCAATTTGTAGACACTGAGACTTGTTGTGGGGCTGTGCCTCACTGGATAATCGCTCTCTTCCCATAAATTCTTGTCTTGTCTCTGCAACCAACAAGGGAGAAAGGCTTATTCCTTACAGTTCGTTGAAATTCCGTGTAGTTGTCAGTCTCCCTTGCTTCGTACTAAAGAAACACAACAGTCTAATTCTTCCCCATTTATCATTCATTTCCATGCTTGTTTCCAAGAACCCAGCCCAAATTACCTGGAGCTGATTCAAGCAATTGTTCTTCCATGATAAGTAAACTCGTTCGATATGATCGAACAAGAGGAAGGATCGAGTCGAACAACAAGTCCAGATGAACCCGAGATAGTTATTGTGTTGCCGACGAGACCCGAAGAAGCAAAAGAAGTACTTGCAAGATCGGAGCGGAGCCACGAGCATGAGCATGAGGGGGCTGGTAAGAGCTCTAGACAGCCTGAGAGCCAGCATACCTGCATCATTGACATAAAAAGCACTGGTGAGTCAATGGATGATGCAAATTCTAGTGATGAAAAGGTTTGCAGGATATGTCATTTGAGCTCCGACCAGTCGGTAACTTCGGACCTTGTAAACCTCGGATGTCGCTGCAAAGGCGAGCTCGGAATGTCCCACCGTGACTGCGCCGAGATTTGGTTTACGCATAGAGGCAACAGACAGTGTGAGATATGTGGTCAGACAGCTACAAACGTGAGGGGAAACAGGAGCAGCGTTTTCATGATACAGAGGAATGAAAGGAGGATGGTAGCAAGCTCAAGCGTGTCGGCAGTGTCCTTAGACAACGAGGTTTCATTATCATGTTGCTGGGGGCAGCGGTTCTGTAATTTTCTATTAACATGCACGGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGATTCAATTTCTTTTGATGATGAGTGATGGCTTTGCTCGAACATCCTATCATCACATTAACCAGCAATAAAGCCAAAAATTATATAATACTGTGTGGGTAG

Coding sequence (CDS)

ATGATCGAACAAGAGGAAGGATCGAGTCGAACAACAAGTCCAGATGAACCCGAGATAGTTATTGTGTTGCCGACGAGACCCGAAGAAGCAAAAGAAGTACTTGCAAGATCGGAGCGGAGCCACGAGCATGAGCATGAGGGGGCTGGTAAGAGCTCTAGACAGCCTGAGAGCCAGCATACCTGCATCATTGACATAAAAAGCACTGGTGAGTCAATGGATGATGCAAATTCTAGTGATGAAAAGGTTTGCAGGATATGTCATTTGAGCTCCGACCAGTCGGTAACTTCGGACCTTGTAAACCTCGGATGTCGCTGCAAAGGCGAGCTCGGAATGTCCCACCGTGACTGCGCCGAGATTTGGTTTACGCATAGAGGCAACAGACAGTGTGAGATATGTGGTCAGACAGCTACAAACGTGAGGGGAAACAGGAGCAGCGTTTTCATGATACAGAGGAATGAAAGGAGGATGGTAGCAAGCTCAAGCGTGTCGGCAGTGTCCTTAGACAACGAGGTTTCATTATCATGTTGCTGGGGGCAGCGGTTCTGTAATTTTCTATTAACATGCACGGTTCTAGCCTTCCTCCTCCCATGGTTTTTTCGATTCAATTTCTTTTGA

Protein sequence

MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGKSSRQPESQHTCIIDIKSTGESMDDANSSDEKVCRICHLSSDQSVTSDLVNLGCRCKGELGMSHRDCAEIWFTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCCWGQRFCNFLLTCTVLAFLLPWFFRFNFF

Homology

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BLAST of CmaCh11G018990 vs. ExPASy TrEMBL
Match: A0A6J1JNU4 (uncharacterized protein LOC111486158 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486158 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.5e-110
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGKSSRQPESQHT 60
           MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGKSSRQPESQHT
Sbjct: 1   MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGKSSRQPESQHT 60

Query: 61  CIIDIKSTGESMDDANSSDEKVCRICHLSSDQSVTSDLVNLGCRCKGELGMSHRDCAEIW 120
           CIIDIKSTGESMDDANSSDEKVCRICHLSSDQSVTSDLVNLGCRCKGELGMSHRDCAEIW
Sbjct: 61  CIIDIKSTGESMDDANSSDEKVCRICHLSSDQSVTSDLVNLGCRCKGELGMSHRDCAEIW 120

Query: 121 FTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCCWGQR 180
           FTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCCWGQR
Sbjct: 121 FTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCCWGQR 180

Query: 181 FCNFLLTCTVLAFLLPWFFRFNFF 205
           FCNFLLTCTVLAFLLPWFFRFNFF
Sbjct: 181 FCNFLLTCTVLAFLLPWFFRFNFF 204

[Close]

BLAST of CmaCh11G018990 vs. ExPASy TrEMBL
Match: A0A6J1ESF7 (uncharacterized protein LOC111437147 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437147 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 2.4e-105
Identity = 195/204 (95.59%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGKSSRQPESQHT 60
           MIEQEEGSSRTTSPDEPEIVIV PTRPEEAKEVLARSE  HEHEHEGAGKSSRQPES HT
Sbjct: 1   MIEQEEGSSRTTSPDEPEIVIVSPTRPEEAKEVLARSEHEHEHEHEGAGKSSRQPESHHT 60

Query: 61  CIIDIKSTGESMDDANSSDEKVCRICHLSSDQSVTSDLVNLGCRCKGELGMSHRDCAEIW 120
           CIIDIKSTGESMDDANSS+EKVCRICHLSSD+SV+SDLVNLGCRCKGELGMSHRDCAEIW
Sbjct: 61  CIIDIKSTGESMDDANSSNEKVCRICHLSSDESVSSDLVNLGCRCKGELGMSHRDCAEIW 120

Query: 121 FTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCCWGQR 180
           F HRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEV LSCCWGQR
Sbjct: 121 FMHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVPLSCCWGQR 180

Query: 181 FCNFLLTCTVLAFLLPWFFRFNFF 205
           FCNFLLTCTVLAFLLPWFFRFNFF
Sbjct: 181 FCNFLLTCTVLAFLLPWFFRFNFF 204

[Close]

BLAST of CmaCh11G018990 vs. ExPASy TrEMBL
Match: A0A1S3CJ88 (probable E3 ubiquitin ligase SUD1 OS=Cucumis melo OX=3656 GN=LOC103501475 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 8.3e-74
Identity = 148/212 (69.81%), Postives = 169/212 (79.72%), Query Frame = 0


Query: 1   MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGK-------SSR 60
           MIEQ EGSS  TSP+EPE +   P+RP EAK V+     ++  E+E   K        S 
Sbjct: 1   MIEQNEGSSGITSPNEPETIAASPSRPREAKGVIGGEGGTYVRENEENSKRHGEEMLESS 60

Query: 61  QPESQHTCIIDIKSTGESMDDANSSDEKVCRICHLSSD-QSVTSDLVNLGCRCKGELGMS 120
           QPES+  CIIDIKS GES+DD +SS+EKVCRICHL S+ +S+TSDL++LGC CK ELG+S
Sbjct: 61  QPESRQNCIIDIKSNGESVDDEDSSEEKVCRICHLGSEHESITSDLIHLGCSCKDELGIS 120

Query: 121 HRDCAEIWFTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVS 180
           HRDCAEIWF HRGNRQCEICGQTATNVR NRSS F I RNERR+VASS++S VSLDNEVS
Sbjct: 121 HRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTMSTVSLDNEVS 180

Query: 181 LSCCWGQRFCNFLLTCTVLAFLLPWFFRFNFF 205
           LSCCWGQRFCNFLLTCTVLAFLLPWFFR +FF
Sbjct: 181 LSCCWGQRFCNFLLTCTVLAFLLPWFFRADFF 212

[Close]

BLAST of CmaCh11G018990 vs. ExPASy TrEMBL
Match: A0A6J1D2I2 (uncharacterized protein LOC111016745 OS=Momordica charantia OX=3673 GN=LOC111016745 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 4.1e-73
Identity = 144/205 (70.24%), Postives = 164/205 (80.00%), Query Frame = 0


Query: 1   MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGKSSRQPESQHT 60
           MI+Q+EGSS T + DE   V+ LP RP+EAKEV     ++H     G        ES H 
Sbjct: 1   MIKQDEGSSGTPNRDESVTVLALPPRPQEAKEVTGGVVQNHNENEAGKRHGEESKESHHN 60

Query: 61  CIIDIKSTGESMDDANSSDEKVCRICHLSSD-QSVTSDLVNLGCRCKGELGMSHRDCAEI 120
           CIIDIKS+GES+D  +SS+EKVCRICHLSS+ QS+ SDL+ LGCRCK ELG+SHRDCAEI
Sbjct: 61  CIIDIKSSGESVDGEDSSEEKVCRICHLSSEHQSIASDLIQLGCRCKDELGISHRDCAEI 120

Query: 121 WFTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCCWGQ 180
           WF HRGNRQCEICGQTATNVRG RS  FMIQRNERR+VASS+VS VSLD++ SLSCCWGQ
Sbjct: 121 WFMHRGNRQCEICGQTATNVRGIRSGGFMIQRNERRLVASSTVSTVSLDSDDSLSCCWGQ 180

Query: 181 RFCNFLLTCTVLAFLLPWFFRFNFF 205
           RFCNFLLTCTVLAFLLPWFFR +FF
Sbjct: 181 RFCNFLLTCTVLAFLLPWFFRLDFF 205

[Close]

BLAST of CmaCh11G018990 vs. ExPASy TrEMBL
Match: A0A0A0LUV6 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G096610 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 5.4e-73
Identity = 147/213 (69.01%), Postives = 170/213 (79.81%), Query Frame = 0


Query: 1   MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVL----ARSERSHEHEHEGAG----KSS 60
           MIEQ EGSS  TSPDEP+ ++  P+RP EAK V+        R +E   +  G    ++S
Sbjct: 1   MIEQNEGSSGITSPDEPKTIVASPSRPREAKGVIGGEGGTCVRENEENRKRHGVEMLETS 60

Query: 61  RQPESQHTCIIDIKSTGESMDDANSSDEKVCRICHLSSD-QSVTSDLVNLGCRCKGELGM 120
            QPES   CIIDIK+ GES+DD +SS+EKVCRICHL S+ +S+TS+L++LGC CK ELG+
Sbjct: 61  SQPESHQNCIIDIKTNGESVDDEDSSEEKVCRICHLGSENESITSELIHLGCSCKDELGI 120

Query: 121 SHRDCAEIWFTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEV 180
           SHRDCAEIWF HRGNRQCEICGQTATNVR NRSS F I RNERR+VASS+VS VSLDNEV
Sbjct: 121 SHRDCAEIWFMHRGNRQCEICGQTATNVRRNRSSHFAIHRNERRLVASSTVSTVSLDNEV 180

Query: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRFNFF 205
           SLSCCWGQRFCNFLLTCTVLAFLLPWFFR +FF
Sbjct: 181 SLSCCWGQRFCNFLLTCTVLAFLLPWFFRADFF 213

[Close]

BLAST of CmaCh11G018990 vs. NCBI nr
Match: XP_022988953.1 (uncharacterized protein LOC111486158 isoform X1 [Cucurbita maxima])

HSP 1 Score: 407.9 bits (1047), Expect = 5.1e-110
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0


Query: 1   MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGKSSRQPESQHT 60
           MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGKSSRQPESQHT
Sbjct: 1   MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGKSSRQPESQHT 60

Query: 61  CIIDIKSTGESMDDANSSDEKVCRICHLSSDQSVTSDLVNLGCRCKGELGMSHRDCAEIW 120
           CIIDIKSTGESMDDANSSDEKVCRICHLSSDQSVTSDLVNLGCRCKGELGMSHRDCAEIW
Sbjct: 61  CIIDIKSTGESMDDANSSDEKVCRICHLSSDQSVTSDLVNLGCRCKGELGMSHRDCAEIW 120

Query: 121 FTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCCWGQR 180
           FTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCCWGQR
Sbjct: 121 FTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCCWGQR 180

Query: 181 FCNFLLTCTVLAFLLPWFFRFNFF 205
           FCNFLLTCTVLAFLLPWFFRFNFF
Sbjct: 181 FCNFLLTCTVLAFLLPWFFRFNFF 204

[Close]

BLAST of CmaCh11G018990 vs. NCBI nr
Match: XP_022930769.1 (uncharacterized protein LOC111437147 isoform X1 [Cucurbita moschata])

HSP 1 Score: 391.3 bits (1004), Expect = 4.9e-105
Identity = 195/204 (95.59%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGKSSRQPESQHT 60
           MIEQEEGSSRTTSPDEPEIVIV PTRPEEAKEVLARSE  HEHEHEGAGKSSRQPES HT
Sbjct: 1   MIEQEEGSSRTTSPDEPEIVIVSPTRPEEAKEVLARSEHEHEHEHEGAGKSSRQPESHHT 60

Query: 61  CIIDIKSTGESMDDANSSDEKVCRICHLSSDQSVTSDLVNLGCRCKGELGMSHRDCAEIW 120
           CIIDIKSTGESMDDANSS+EKVCRICHLSSD+SV+SDLVNLGCRCKGELGMSHRDCAEIW
Sbjct: 61  CIIDIKSTGESMDDANSSNEKVCRICHLSSDESVSSDLVNLGCRCKGELGMSHRDCAEIW 120

Query: 121 FTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCCWGQR 180
           F HRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEV LSCCWGQR
Sbjct: 121 FMHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVPLSCCWGQR 180

Query: 181 FCNFLLTCTVLAFLLPWFFRFNFF 205
           FCNFLLTCTVLAFLLPWFFRFNFF
Sbjct: 181 FCNFLLTCTVLAFLLPWFFRFNFF 204

[Close]

BLAST of CmaCh11G018990 vs. NCBI nr
Match: KAG7022941.1 (hypothetical protein SDJN02_16677 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 387.5 bits (994), Expect = 7.1e-104
Identity = 194/204 (95.10%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGKSSRQPESQHT 60
           MIEQEEGSSRTTSPDEPEIVIV P RPEEAKEVLARSERS EHEHEGAGKSSRQPES HT
Sbjct: 1   MIEQEEGSSRTTSPDEPEIVIVSPMRPEEAKEVLARSERSDEHEHEGAGKSSRQPESHHT 60

Query: 61  CIIDIKSTGESMDDANSSDEKVCRICHLSSDQSVTSDLVNLGCRCKGELGMSHRDCAEIW 120
           CIIDIKSTGESMDDANSS+EKVCRICHLSSD+SV+S+LVNLGCRCKGELGMSHRDCAEIW
Sbjct: 61  CIIDIKSTGESMDDANSSNEKVCRICHLSSDESVSSELVNLGCRCKGELGMSHRDCAEIW 120

Query: 121 FTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCCWGQR 180
           F HRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEV LSCCWGQR
Sbjct: 121 FMHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVPLSCCWGQR 180

Query: 181 FCNFLLTCTVLAFLLPWFFRFNFF 205
           FCNFLLTCTVLAFLLPWFFRFNFF
Sbjct: 181 FCNFLLTCTVLAFLLPWFFRFNFF 204

[Close]

BLAST of CmaCh11G018990 vs. NCBI nr
Match: XP_023530414.1 (uncharacterized protein LOC111792994 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 381.7 bits (979), Expect = 3.9e-102
Identity = 194/204 (95.10%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGKSSRQPESQHT 60
           MIEQEEGSSRTTSPDEPEIVIV PTRPEEAKEVLARSERS   EHEGAGKSSRQPES HT
Sbjct: 1   MIEQEEGSSRTTSPDEPEIVIVSPTRPEEAKEVLARSERS--DEHEGAGKSSRQPESHHT 60

Query: 61  CIIDIKSTGESMDDANSSDEKVCRICHLSSDQSVTSDLVNLGCRCKGELGMSHRDCAEIW 120
           CIIDIKSTGESMDDANSS+EKVCRICHLSSD+SV+SDLVNLGCRCKGELGMSHRDCAEIW
Sbjct: 61  CIIDIKSTGESMDDANSSNEKVCRICHLSSDESVSSDLVNLGCRCKGELGMSHRDCAEIW 120

Query: 121 FTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCCWGQR 180
           F HRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEV LSCCWGQR
Sbjct: 121 FMHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVPLSCCWGQR 180

Query: 181 FCNFLLTCTVLAFLLPWFFRFNFF 205
           FCNFLLTCTVLAFLLPWFFRFNFF
Sbjct: 181 FCNFLLTCTVLAFLLPWFFRFNFF 202

[Close]

BLAST of CmaCh11G018990 vs. NCBI nr
Match: KAG6589242.1 (hypothetical protein SDJN03_17807, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 322.4 bits (825), Expect = 2.8e-84
Identity = 163/170 (95.88%), Postives = 166/170 (97.65%), Query Frame = 0


Query: 1   MIEQEEGSSRTTSPDEPEIVIVLPTRPEEAKEVLARSERSHEHEHEGAGKSSRQPESQHT 60
           MIEQEEGSSRTTSPDEPEIVIV PTRPEEAKEVLARSERS EHEHEGAGKSSRQPES HT
Sbjct: 1   MIEQEEGSSRTTSPDEPEIVIVSPTRPEEAKEVLARSERSDEHEHEGAGKSSRQPESHHT 60

Query: 61  CIIDIKSTGESMDDANSSDEKVCRICHLSSDQSVTSDLVNLGCRCKGELGMSHRDCAEIW 120
           CIIDIKSTGESMDDANSS+EKVCRICHLSSD+SV+SDLVNLGCRCKGELGMSHRDCAEIW
Sbjct: 61  CIIDIKSTGESMDDANSSNEKVCRICHLSSDESVSSDLVNLGCRCKGELGMSHRDCAEIW 120

Query: 121 FTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNE 171
           F HRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNE
Sbjct: 121 FMHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNE 170

[Close]

BLAST of CmaCh11G018990 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-20
Identity = 53/129 (41.09%), Postives = 70/129 (54.26%), Query Frame = 0


Query: 78  SDEKVCRICH--LSSDQSVTSDLVNLGCRCKGELGMSHRDCAEIWFTHRGNRQCEICGQT 137
           S EK CRICH  L S +    D + LGC CK +LG  H+ CA+ WF  +GN+ CEIC   
Sbjct: 73  SPEKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEICRSI 132

Query: 138 ATNV--RGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCCWGQRFCNFLLTCTVLAF 197
           A N     N      ++ N   + A ++ + V+  +      C G RF NFLLTC V AF
Sbjct: 133 AQNFFKVDNEIGQTTVETNVDDVEAGNTPTMVATSDSDDRRLCRGNRFLNFLLTCMVCAF 192

Query: 198 LLPWFFRFN 203
           ++ WFF FN
Sbjct: 193 VISWFFHFN 201

[Close]

BLAST of CmaCh11G018990 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-19
Identity = 51/128 (39.84%), Postives = 68/128 (53.12%), Query Frame = 0


Query: 77  SSDEKVCRICHLSSDQS--VTSDLVNLGCRCKGELGMSHRDCAEIWFTHRGNRQCEICGQ 136
           S  E+ CRICH+S D +   +   + LGC CK +L  +H+ CAE WF  +GN+ CE+CG 
Sbjct: 73  SQSERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGS 132

Query: 137 TATNVRGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCCWGQRFCNFLLTCTVLAFL 196
            A NV G+        RNE   V + ++           S   G RF NFLL C V AF+
Sbjct: 133 IAGNVVGSVEVESEESRNEANGVENLTLRTSGPRLVEGRSFWQGHRFLNFLLACMVFAFV 192

Query: 197 LPWFFRFN 203
           + W F FN
Sbjct: 193 ISWLFHFN 200

[Close]

BLAST of CmaCh11G018990 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 7.1e-17
Identity = 57/164 (34.76%), Postives = 76/164 (46.34%), Query Frame = 0


Query: 45  HEGAGKSSRQPESQHTCIIDIKSTGESMDDANSSDEKVCRICHLSSDQSVTSDLVNLGCR 104
           +E  G  SR+  S    ++   S+    DDA +  EK CRICHL  + S     + LGC 
Sbjct: 50  YEYEGDQSRKVSS----VMSPSSSEIDDDDATAPPEKDCRICHLGVETS-GGGAIELGCS 109

Query: 105 CKGELGMSHRDCAEIWFTHRGNRQCEICGQTATNVRGNRSSVFMIQ-----RNERRMVAS 164
           CK +L ++HR CAE WF  +G++ CEIC   A NV G    V         RN     A 
Sbjct: 110 CKDDLAVAHRQCAETWFKIKGDKTCEICQSVARNVGGANEMVGSTMEERELRNGEETAAG 169

Query: 165 SSVSAVSLDNEVSLSCCW-GQRFCNFLLTCTVLAFLLPWFFRFN 203
               A  ++N       W  QR  N +L C V  F + W F F+
Sbjct: 170 EGGGATVVENR------WQPQRVVNLVLACMVFGFFISWIFHFH 202

[Close]

BLAST of CmaCh11G018990 vs. TAIR 10
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-15
Identity = 55/144 (38.19%), Postives = 68/144 (47.22%), Query Frame = 0


Query: 74  DANSSDEKVCRICHLSSDQ---------SVTSDLVNLGCRCKGELGMSHRDCAEIWFTHR 133
           D +   E++CRICH  SDQ         SV+ +L+ +GC+CK ELG++H  CAE WF  R
Sbjct: 93  DLSGVGERICRICHFGSDQSPEASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLR 152

Query: 134 GNRQCEICGQTATNV--------RGNRSSVFMIQRNERRMVASSSVSAVSLDNEVSLSCC 193
           GN  CEICG TA NV         G R +    +R   R                  SCC
Sbjct: 153 GNSVCEICGCTAKNVTVRLMEDWSGERDNTLDGRRRRGR----------------GQSCC 212

Query: 194 WGQRFCNFLLTCTVLAFLLPWFFR 201
               F  FLLT      LL WFF+
Sbjct: 213 ---IFMVFLLT----ILLLHWFFK 213

[Close]

BLAST of CmaCh11G018990 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-13
Identity = 40/103 (38.83%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 99  VNLGCRCKGELGMSHRDCAEIWFTHRGNRQCEICGQTATNVRGNRSSVFMIQRNERRMVA 158
           + LGC CKG+LG++H  CAE WF  +GN  CEICG  A NV G +S+             
Sbjct: 130 LQLGCSCKGDLGVAHSKCAETWFKIKGNMTCEICGAMALNVAGEQSN-----PESTASTH 189

Query: 159 SSSVSAVSLDNEVSLSCCWGQRFCNFLLTCTVLAFLLPWFFRF 202
           S + +  SL          G+   NFLL   V AF++ W F F
Sbjct: 190 SQAAAGQSLTQTEPRGIWHGRPVMNFLLAAMVFAFVVSWLFHF 227

The following BLAST results are available for this feature:

BLAST of CmaCh11G018990 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G018990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JNU4	2.5e-110	100.00	uncharacterized protein LOC111486158 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ESF7	2.4e-105	95.59	uncharacterized protein LOC111437147 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3CJ88	8.3e-74	69.81	probable E3 ubiquitin ligase SUD1 OS=Cucumis melo OX=3656 GN=LOC103501475 PE=4 S...	[more]
A0A6J1D2I2	4.1e-73	70.24	uncharacterized protein LOC111016745 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A0A0LUV6	5.4e-73	69.01	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G09661...	[more]

BLAST of CmaCh11G018990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988953.1	5.1e-110	100.00	uncharacterized protein LOC111486158 isoform X1 [Cucurbita maxima]	[more]
XP_022930769.1	4.9e-105	95.59	uncharacterized protein LOC111437147 isoform X1 [Cucurbita moschata]	[more]
KAG7022941.1	7.1e-104	95.10	hypothetical protein SDJN02_16677 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023530414.1	3.9e-102	95.10	uncharacterized protein LOC111792994 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6589242.1	2.8e-84	95.88	hypothetical protein SDJN03_17807, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh11G018990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01070.2	2.3e-20	41.09	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G05830.1	3.4e-19	39.84	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	7.1e-17	34.76	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G34200.1	1.3e-15	38.19	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	2.8e-13	38.83	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 82..133 e-value: 8.2E-13 score: 58.6
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 83..132 e-value: 3.4E-10 score: 39.9
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 75..139 score: 19.979101
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 66..144 e-value: 7.2E-17 score: 62.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..52
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 18..204
None	No IPR available	PANTHER	PTHR46214:SF8	OS01G0731800 PROTEIN	coord: 18..204
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 76..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G018990.1	CmaCh11G018990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding