CmaCh11G018910 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G018910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Cma_Chr11: 12529849 .. 12530385 (+)
RNA-Seq Expression	CmaCh11G018910
Synteny	CmaCh11G018910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTCGAAGGAGGAAGCAAAGATTTCTCGGAAGGATCTTCATCAACCTCTTCCCCACAGCCTGGTGGACCAATCCCAAGCCGATACGAGTCCCAAAAACGAAGAGATTGGAACACATTTTGCCAATATTTGAAGAATCAAAGGCCCCCAGTTCCTCTTTCCCATTGTAGTTGTAACCATGTTTTGGAGTTTTTAAGGTATCTCGATCAGTTTGGCAAGACAAAAGTTCATGTTCAAGGTTGCATGTTTTACGGCCAGCCCGAGCCACCTGCCCCTTGTACTTGTCCTTTAAGACAAGCTTGGGGCAGTTTGGATGCCCTTATTGGGCGCTTGAGAGCTGCTTATGAAGAAAGTGGTGGCTCCCCGGAGACCAACCCTTTTGCTAGCGGTGCAATTAGGGTTTATCTTAGGGATGTCAGGGAGTGTCAAGCTAAAGCTAGAGGAATTCCTTACAAGAAGAAGAAGAAGACTACTACCACTAATCAATCCAAAGGAGCTGAAGATTCAACCTCTATGATGCACTTTGTCCCTTGA

mRNA sequence

ATGTCTTTCGAAGGAGGAAGCAAAGATTTCTCGGAAGGATCTTCATCAACCTCTTCCCCACAGCCTGGTGGACCAATCCCAAGCCGATACGAGTCCCAAAAACGAAGAGATTGGAACACATTTTGCCAATATTTGAAGAATCAAAGGCCCCCAGTTCCTCTTTCCCATTGTAGTTGTAACCATGTTTTGGAGTTTTTAAGGTATCTCGATCAGTTTGGCAAGACAAAAGTTCATGTTCAAGGTTGCATGTTTTACGGCCAGCCCGAGCCACCTGCCCCTTGTACTTGTCCTTTAAGACAAGCTTGGGGCAGTTTGGATGCCCTTATTGGGCGCTTGAGAGCTGCTTATGAAGAAAGTGGTGGCTCCCCGGAGACCAACCCTTTTGCTAGCGGTGCAATTAGGGTTTATCTTAGGGATGTCAGGGAGTGTCAAGCTAAAGCTAGAGGAATTCCTTACAAGAAGAAGAAGAAGACTACTACCACTAATCAATCCAAAGGAGCTGAAGATTCAACCTCTATGATGCACTTTGTCCCTTGA

Coding sequence (CDS)

ATGTCTTTCGAAGGAGGAAGCAAAGATTTCTCGGAAGGATCTTCATCAACCTCTTCCCCACAGCCTGGTGGACCAATCCCAAGCCGATACGAGTCCCAAAAACGAAGAGATTGGAACACATTTTGCCAATATTTGAAGAATCAAAGGCCCCCAGTTCCTCTTTCCCATTGTAGTTGTAACCATGTTTTGGAGTTTTTAAGGTATCTCGATCAGTTTGGCAAGACAAAAGTTCATGTTCAAGGTTGCATGTTTTACGGCCAGCCCGAGCCACCTGCCCCTTGTACTTGTCCTTTAAGACAAGCTTGGGGCAGTTTGGATGCCCTTATTGGGCGCTTGAGAGCTGCTTATGAAGAAAGTGGTGGCTCCCCGGAGACCAACCCTTTTGCTAGCGGTGCAATTAGGGTTTATCTTAGGGATGTCAGGGAGTGTCAAGCTAAAGCTAGAGGAATTCCTTACAAGAAGAAGAAGAAGACTACTACCACTAATCAATCCAAAGGAGCTGAAGATTCAACCTCTATGATGCACTTTGTCCCTTGA

Protein sequence

MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP

Homology

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BLAST of CmaCh11G018910 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 7.7e-73
Identity = 134/162 (82.72%), Postives = 140/162 (86.42%), Query Frame = 0


Query: 13  GSSSTSSPQPGGPI-PSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQ 72
           G S   S     P+ PSRYESQKRRDWNTF QYLKNQRPPVP+SHCSCNHVL+FLRYLDQ
Sbjct: 8   GKSLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQ 67

Query: 73  FGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASG 132
           FGKTKVHV GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPFASG
Sbjct: 68  FGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASG 127

Query: 133 AIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTS 173
           AIRVYLR+VRECQAKARGIPY KKKKK  T     G EDS+S
Sbjct: 128 AIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of CmaCh11G018910 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.2e-61
Identity = 112/156 (71.79%), Postives = 128/156 (82.05%), Query Frame = 0


Query: 18  SSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKV 77
           ++PQP   + SRYESQKRRDWNTF QYL+N RPP+ L+ CS  HV+EFLRYLDQFGKTKV
Sbjct: 21  AAPQPPAQL-SRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKV 80

Query: 78  HVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYL 137
           H  GC FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEESGG+PE+NPFA+ A+R+YL
Sbjct: 81  HASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYL 140

Query: 138 RDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTS 173
           R+VR+ QAKARGIPY KKK+K +   Q  G E S S
Sbjct: 141 REVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGS 175

[Close]

BLAST of CmaCh11G018910 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.2e-61
Identity = 112/156 (71.79%), Postives = 128/156 (82.05%), Query Frame = 0


Query: 18  SSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKV 77
           ++PQP   + SRYESQKRRDWNTF QYL+N RPP+ L+ CS  HV+EFLRYLDQFGKTKV
Sbjct: 21  AAPQPPAQL-SRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKV 80

Query: 78  HVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYL 137
           H  GC FYGQP PP PC CPLRQAWGSLDALIGRLRAAYEESGG+PE+NPFA+ A+R+YL
Sbjct: 81  HASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYL 140

Query: 138 RDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTS 173
           R+VR+ QAKARGIPY KKK+K +   Q  G E S S
Sbjct: 141 REVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGS 175

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BLAST of CmaCh11G018910 vs. ExPASy Swiss-Prot
Match: Q6ATW6 (Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 9.8e-60
Identity = 104/136 (76.47%), Postives = 118/136 (86.76%), Query Frame = 0


Query: 28  SRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQ 87
           SRYESQKRRDWNTF QYLKN RPP+ L+ CS  HV+EFL+YLDQFGKTKVH  GC +YGQ
Sbjct: 29  SRYESQKRRDWNTFLQYLKNHRPPLTLARCSGAHVIEFLKYLDQFGKTKVHASGCAYYGQ 88

Query: 88  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGAIRVYLRDVRECQAKA 147
           P PPAPC CPLRQAWGSLDALIGRLRAAYEESG +PE+NPFA+ A+R+YLR+VR+ QAKA
Sbjct: 89  PSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAPESNPFAARAVRIYLREVRDAQAKA 148

Query: 148 RGIPYKKKKKTTTTNQ 164
           RGIPY+KKK+  T  Q
Sbjct: 149 RGIPYEKKKRKRTQQQ 164

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BLAST of CmaCh11G018910 vs. ExPASy Swiss-Prot
Match: Q9ZVA0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 9.8e-60
Identity = 111/173 (64.16%), Postives = 132/173 (76.30%), Query Frame = 0


Query: 4   EGGSKDFSEGSSSTSSPQ--PGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNH 63
           EG S+  S+       PQ  P  P  SRYESQKRRDWNTFCQYL+NQ+PPV +S C  NH
Sbjct: 13  EGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNH 72

Query: 64  VLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGG 123
           +L+FL+YLDQFGKTKVH+ GC+F+GQ EP   C CPL+QAWGSLDALIGRLRAA+EE+GG
Sbjct: 73  ILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGG 132

Query: 124 SPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTN--QSKGAEDSTS 173
            PE NPFA G IRV+LR+VR+ QAKARG+PYKK+KK    N  +S   ED T+
Sbjct: 133 LPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDGEDGTT 185

[Close]

BLAST of CmaCh11G018910 vs. ExPASy TrEMBL
Match: A0A6J1JNV9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111486170 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.2e-100
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP 178

[Close]

BLAST of CmaCh11G018910 vs. ExPASy TrEMBL
Match: A0A6J1EWG4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111437182 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.7e-97
Identity = 175/179 (97.77%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEG +KDFSEGSSSTSSPQPGG IPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPY KKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of CmaCh11G018910 vs. ExPASy TrEMBL
Match: A0A0A0K2D1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 9.4e-82
Identity = 156/189 (82.54%), Postives = 163/189 (86.24%), Query Frame = 0


Query: 1   MSFEGG--SKDFSEGSSSTS--SPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MS EG   SKDFSEGSSS+S      G   PSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CSCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120
           C+CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY
Sbjct: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGA-------ED 179
           EE+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKK TT +Q+KG+         
Sbjct: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSS 180

[Close]

BLAST of CmaCh11G018910 vs. ExPASy TrEMBL
Match: A0A1S3C1B9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495500 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.7e-81
Identity = 157/188 (83.51%), Postives = 163/188 (86.70%), Query Frame = 0


Query: 1   MSFEGG-SKDFSEGSSSTS--SPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MS EG  SKDFSEGSSS+S      G   PSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  SCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120
           +CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE
Sbjct: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ESGGSPETNPFASGAIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGA------EDS 179
           E+GGS ETNPFASGAIRVYLRDVRECQAKARGIPY KKKKKT+T NQ+KG         S
Sbjct: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSTINQTKGGGHDDQDSSS 180

[Close]

BLAST of CmaCh11G018910 vs. ExPASy TrEMBL
Match: A0A5D3C6X1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003300 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 6.1e-81
Identity = 157/189 (83.07%), Postives = 162/189 (85.71%), Query Frame = 0


Query: 1   MSFEGG-SKDFSEGSSSTS--SPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MS EG  SKDFSEGSSS+S      G   PSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  SCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120
           +CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE
Sbjct: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTT--TTNQSKGA------ED 179
           E+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKK T  T NQ+KG         
Sbjct: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSSTINQTKGGGHDDQDSS 180

[Close]

BLAST of CmaCh11G018910 vs. NCBI nr
Match: XP_022988968.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 375.6 bits (963), Expect = 2.4e-100
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP 178

[Close]

BLAST of CmaCh11G018910 vs. NCBI nr
Match: XP_023530720.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 366.7 bits (940), Expect = 1.1e-97
Identity = 176/179 (98.32%), Postives = 177/179 (98.88%), Query Frame = 0


Query: 1   MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEGG+KDFSEGSSSTSSPQPGG IPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGGTKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPY KKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of CmaCh11G018910 vs. NCBI nr
Match: KAG7022931.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 365.5 bits (937), Expect = 2.5e-97
Identity = 174/178 (97.75%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEG +KDFSEGSSSTSSPQP G IPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGAEDSTSMMHFVP 178

[Close]

BLAST of CmaCh11G018910 vs. NCBI nr
Match: XP_022930813.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 364.4 bits (934), Expect = 5.6e-97
Identity = 175/179 (97.77%), Postives = 176/179 (98.32%), Query Frame = 0


Query: 1   MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEG +KDFSEGSSSTSSPQPGG IPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGATKDFSEGSSSTSSPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPY KKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of CmaCh11G018910 vs. NCBI nr
Match: KAG6589232.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 360.9 bits (925), Expect = 6.2e-96
Identity = 174/179 (97.21%), Postives = 175/179 (97.77%), Query Frame = 0


Query: 1   MSFEGGSKDFSEGSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60
           MSFEG +KDFSEGSSSTSSPQP G IPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN
Sbjct: 1   MSFEGATKDFSEGSSSTSSPQPVGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCN 60

Query: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120
           HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG
Sbjct: 61  HVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESG 120

Query: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTSMMHFVP 179
           GSPETNPFASGAIRVYLRDVRECQAKARGIPY KKKKKTTTTNQSKGAEDSTSMMHFVP
Sbjct: 121 GSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGAEDSTSMMHFVP 179

[Close]

BLAST of CmaCh11G018910 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 274.6 bits (701), Expect = 5.5e-74
Identity = 134/162 (82.72%), Postives = 140/162 (86.42%), Query Frame = 0


Query: 13  GSSSTSSPQPGGPI-PSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQ 72
           G S   S     P+ PSRYESQKRRDWNTF QYLKNQRPPVP+SHCSCNHVL+FLRYLDQ
Sbjct: 8   GKSLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQ 67

Query: 73  FGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASG 132
           FGKTKVHV GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPFASG
Sbjct: 68  FGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASG 127

Query: 133 AIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTS 173
           AIRVYLR+VRECQAKARGIPY KKKKK  T     G EDS+S
Sbjct: 128 AIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of CmaCh11G018910 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 274.6 bits (701), Expect = 5.5e-74
Identity = 134/162 (82.72%), Postives = 140/162 (86.42%), Query Frame = 0


Query: 13  GSSSTSSPQPGGPI-PSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQ 72
           G S   S     P+ PSRYESQKRRDWNTF QYLKNQRPPVP+SHCSCNHVL+FLRYLDQ
Sbjct: 8   GKSLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQ 67

Query: 73  FGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASG 132
           FGKTKVHV GCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPFASG
Sbjct: 68  FGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASG 127

Query: 133 AIRVYLRDVRECQAKARGIPY-KKKKKTTTTNQSKGAEDSTS 173
           AIRVYLR+VRECQAKARGIPY KKKKK  T     G EDS+S
Sbjct: 128 AIRVYLREVRECQAKARGIPYKKKKKKKPTPEMGGGREDSSS 169

[Close]

BLAST of CmaCh11G018910 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 231.1 bits (588), Expect = 6.9e-61
Identity = 111/173 (64.16%), Postives = 132/173 (76.30%), Query Frame = 0


Query: 4   EGGSKDFSEGSSSTSSPQ--PGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNH 63
           EG S+  S+       PQ  P  P  SRYESQKRRDWNTFCQYL+NQ+PPV +S C  NH
Sbjct: 13  EGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNH 72

Query: 64  VLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGG 123
           +L+FL+YLDQFGKTKVH+ GC+F+GQ EP   C CPL+QAWGSLDALIGRLRAA+EE+GG
Sbjct: 73  ILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGG 132

Query: 124 SPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTN--QSKGAEDSTS 173
            PE NPFA G IRV+LR+VR+ QAKARG+PYKK+KK    N  +S   ED T+
Sbjct: 133 LPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDGEDGTT 185

[Close]

BLAST of CmaCh11G018910 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 228.0 bits (580), Expect = 5.9e-60
Identity = 113/165 (68.48%), Postives = 133/165 (80.61%), Query Frame = 0


Query: 7   SKDFSEGSSSTSS-------PQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSC 66
           +KD  +  SS+S+       PQP  P+ SRYESQKRRDWNTF QYLK+Q PP+ +S    
Sbjct: 9   TKDPPDHPSSSSNHHKQPLPPQPQQPL-SRYESQKRRDWNTFVQYLKSQNPPLMMSQFDY 68

Query: 67  NHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEE- 126
            HVL FLRYLDQFGKTKVH Q C+F+GQP+PP PCTCPL+QAWGSLDALIGRLRAAYEE 
Sbjct: 69  THVLSFLRYLDQFGKTKVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEH 128

Query: 127 SGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQ 164
            GGSP+TNPFA+G+IRV+LR+VRE QAKARGIPY+KKK+  T N+
Sbjct: 129 GGGSPDTNPFANGSIRVHLREVRESQAKARGIPYRKKKRRKTKNE 172

[Close]

BLAST of CmaCh11G018910 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 224.2 bits (570), Expect = 8.5e-59
Identity = 103/145 (71.03%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 13  GSSSTSSPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCSCNHVLEFLRYLDQF 72
           G S  SSP      PSRYESQKRRDWNTF QYLKN +PP+ LS CS  HV+EFL+YLDQF
Sbjct: 18  GPSFVSSPP---ATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQF 77

Query: 73  GKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEESGGSPETNPFASGA 132
           GKTKVHV  C ++G  +PP+PC+CPL+QAWGSLDALIGRLRAAYEE+GG P++NPFA+ A
Sbjct: 78  GKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARA 137

Query: 133 IRVYLRDVRECQAKARGIPYKKKKK 158
           +R+YLR+VRE QAKARGIPY+KKK+
Sbjct: 138 VRIYLREVRESQAKARGIPYEKKKR 159

The following BLAST results are available for this feature:

BLAST of CmaCh11G018910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	7.7e-73	82.72	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
A2XED8	5.2e-61	71.79	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	5.2e-61	71.79	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
Q6ATW6	9.8e-60	76.47	Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1	[more]
Q9ZVA0	9.8e-60	64.16	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of CmaCh11G018910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JNV9	1.2e-100	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1EWG4	2.7e-97	97.77	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A0A0K2D1	9.4e-82	82.54	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 S...	[more]
A0A1S3C1B9	2.7e-81	83.51	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A5D3C6X1	6.1e-81	83.07	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of CmaCh11G018910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988968.1	2.4e-100	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima]	[more]
XP_023530720.1	1.1e-97	98.32	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]	[more]
KAG7022931.1	2.5e-97	97.75	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_022930813.1	5.6e-97	97.77	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]
KAG6589232.1	6.2e-96	97.21	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]

BLAST of CmaCh11G018910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	5.5e-74	82.72	Protein of unknown function (DUF640)	[more]
AT2G42610.2	5.5e-74	82.72	Protein of unknown function (DUF640)	[more]
AT1G78815.1	6.9e-61	64.16	Protein of unknown function (DUF640)	[more]
AT4G18610.1	5.9e-60	68.48	Protein of unknown function (DUF640)	[more]
AT1G07090.1	8.5e-59	71.03	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 20..142 e-value: 1.5E-65 score: 219.0
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 29..156 score: 80.158211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..178
None	No IPR available	PANTHER	PTHR31165:SF72	DUF640 FAMILY PROTEIN	coord: 6..176
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 6..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G018910.1	CmaCh11G018910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus