CmaCh11G014190 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G014190
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Cma_Chr11: 9347446 .. 9350868 (+)
RNA-Seq Expression	CmaCh11G014190
Synteny	CmaCh11G014190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATTCGGACGCCAGCTGTCTCAGCTCCCGCGGGGATCATATATATCCCTCCCGCACTCATACTCTCTTCTTCAGGACACATTCTCACACTAGAACGTTCATTGCCGAATTCAACCGCTAGATAATTACCAAGCAATCGGAGGAAGAGAGCAGAATCGAAAGGAGTTTATCGCCTGATCCCGATGATGAAAAATAGAGGTAATGTAAGATTGACTACTCTGTTCTGGGTTGAAATTGTTAAGGCACGGCTGGCTATTCCGATTTAGGGGTTTATTGGAGAAATTCAGAGGTTATTCTGATTTAGGGGTTCACTCGAGCAACTTCAGAGGTTAATCGAACGATCGGATCGTTCTTTTTCTTTTTTTGCCTGTTATCGACACTTTCTGTATTTTTCGTGGTTTCGATTATGGAGGATTAGGGCGTTTTTAGTAGGTTCATTGATCGTTCCCATGGTTACGTGATTATTGTCTTGTATTCTTCGTTTCATTCCCATCATCTTCTATCTCTTCTCTGTGTGAGGAGCCAGGGAACAAACCTGATATTCAAATTTATGTGTTGGCAGAAGAGAAGAGAACGGCGAACTCTTATGTCATTGCGATTGGTTCCGATAACAGAGTGCGGTAGAACAAAGCAGTTGCTCTTGATGAAGCGATTGCTTGGGCAAAAGAAAAAACAGTTGGTCCTGTCAATTCAGGCCGGTGGGATTTTCGCATCTGCTAGGAATACTGGTACGATTCCAAGCCTAAGGCTGTGAAGTTGAATTTAGCTTTATTTTTAGCTTTCTAATTTGTTGGCTGTGAAGTTGTGAATTGTAGCTTTAGCTGCTTTATTGATTTTCGGTTTTACAACTCTTGAAAAAAGATGTACTGAAAGTAAATGATGAATCAAAAAGCCTAATATCATGAAAGTCGTTTGTCTTAAGGAAGAAGTTCTGCAGGGGCCTCCCTTGCTCAATGAAGAACCATGGAATTACTGTCCTTTTATCTTCCATAAGTTCTTCACCATATTTTTTGAGGCAGCAGTTAAGAAAGCTCCAAAATGTAAATGTTGCTAGGTTGGGTTGCAATGAAATAAACTACATTACAGAATATAGAATCTTATCGGCACAGTTACCATTCTGTCGAGCCAGTTTAGACAATACTTCTTATAGAACTTAGCCAGAATTGAAGGAAAAAACAGTTGGCTTGTATTGTAAAATTTACTGTCATGCACTATTGTTGTCAGCTTATTGATCTTTGGTTTACAATTGTTTGCTTATGGATTATGTCAGCATCTGACTGCAAGTTCTGGAAAGTTTGATTTTTAGATGTTATAGTTTTCAGTATTTGATTGTCTTTCAATGTTAGAGTGTGTCCATATTTCTTACAATAGTATTCCATTTTCTGAACTTGCACAGATTTGCATTTAGATTCATCTAAATGATCAAGCAAGATGTACTCTTCTCCACTTTTAAACAATGTCGACTATGTTCGCGTTCATAATATTTGGGAGTCTGTATGAGTATTTATAGCTTTTTTTCCTGCTAGTGGATGATTTGATGCACTTTTTTTTTTAATTTGCATGTGATTTCAACATAAATGAAGGGTTTCATTTTTCTTTTCAACCACTTGAAATTTTGAGAATGAGCTTTTGGATTCAAAATTTTCTCTTACGAACATTCCTCTAGGTCATGATGATGAACGAACCATATGAGATATATACTAGTGTCTGGATCAATTTTTGAGACTGATTTGAGTCTAGGGCAAAATGGTGAAAATCAATTTGTTGAAATCGAAGGTACTTTCTTTGTTCAACTTAATGATTTGTCTGAATTGAAGATCAATGCATAATTATTTTTTTCATTAATAATATCATGCAGGACGGTCCGGTTCATGTAAAGTTTGTTGTAAACAATTAGGGATGCATGAAATATAACCATACAACCCACTAAGGTAAGCCATTGCTTCTACAAAACTTTTATCATTCTATTTACCGGTCAAACTTTAACAAAAATAGTTAATGTTCACTTTTAATTGTTTCAAATTATCCGTATCTCATTGGTTTGACATTATTGTTCATATTTCCTTTGCTATTGGAGAAGATTTTGATTAATAACCATGTTAATAAAATTTCAGATGGAAATGGAGGACAAAAGTTGAGGTCAAGGAATCCAACTCTGGTTGCTACATTCAACCCTCCATCACGTAAGAAGAAAGGTCATCCACCATACAAGTGTTGGAGAAGACCTAACGCCTTCTACTCCAAATGCAATCAACTTGGACATGAAGCCGTGATCTGTAAAGTCAAAGATCAGGTGAAAGAAGTAGATGCACAGGTAGTTGATCAAGAAGAGGAAGAAGAAGATCAATTGTTTGTGGCCACTTGTTTCTCAGGCAAAGAATCAAGCGAGAGCTGGTTGATTGACAGTGGGTGCACAAATCATATGACGTATGACAAGGAGTTTTTTGAGGAATTAAGAGACACTGAAGTCAAGAGAGTGAGGATTGGCAACGGTGAACACTTGGAAGTCAAAGGAAAAGGCACAGTAACTATAACAAGTTATGAAGGTACAAAATTTATTCCAGATGTTTTATTTGTACCTAAAATTGATCAAAATCTCTTAAGTATTGTTCTTTTATCACTATAAAGTGTTGTTTGAGAATGAACAGTGTTTGATCAAAGATTCTAGTGGAAAAGACTTGTTCAATGTCAAAATGAAAGGAAAAAGTTTTGCTCTAAATCCGATGGATGTAGAGCAGATGGCCTTTATATCCAAAGCTAGTGCCACTGAGATTTGGCACAAAAGACTTGGGCACTTTCATCATCGAGGTTTGCTTCAGATGCAGTCAAAGAAGCAGGTAGAAGGACTCGCTGACATTAATGATGACATGCCTCCTTGCCGTGTTTGTAATTTTGGGAAGCAACATAGGCAACCCTTTCCTAAACAAGCATGGAGAGCCTCGAAAAAATTGTAGCTAGTTCATACTGATCTTTGTGGTCCTCAGCGAACACCATCATTAAATGGTAATCTTTATTACATTATTTTTATTGATGATCTAACAAGAATGTGTTGGATCTTCTTTATGAAGCAAAAGTCAGAGGTTGCGGGTGTATTTTGGAAATTCAAGGCTAGAGTTGAGAATGAAAGTGTATGCTTGATTCAAACGGTAAGATCAGATAATGGCAAGGAGTACACTTCAGAAACTTTTAACAGGTTTTGTGATGAGGCTGGAATTGAACATCAGTTGACAGCACCATACACTCCTCAACAGAATGGCGTCAGTGAAAGGAGGAATAGATTCATAATGGAGATGACGAGATGCATGCTTCATGAGAAGGATCTTCCAAAATGTTTTAAGATATGTACTGCTGTGTACCGAGGAAAGAAGAACTTAAAACCCAAAGAACCTGCCTTATTCAAAAGGAACAAAAGGAACATCTAA

mRNA sequence

CTTATTCGGACGCCAGCTGTCTCAGCTCCCGCGGGGATCATATATATCCCTCCCGCACTCATACTCTCTTCTTCAGGACACATTCTCACACTAGAACGTTCATTGCCGAATTCAACCGCTAGATAATTACCAAGCAATCGGAGGAAGAGAGCAGAATCGAAAGGAGTTTATCGCCTGATCCCGATGATGAAAAATAGAGAAGAGAAGAGAACGGCGAACTCTTATGTCATTGCGATTGGTTCCGATAACAGAGTGCGGTAGAACAAAGCAGTTGCTCTTGATGAAGCGATTGCTTGGGCAAAAGAAAAAACAGTTGGTCCTGTCAATTCAGGCCGGTGGGATTTTCGCATCTGCTAGGAATACTGGTCATGATGATGAACGAACCATATGAGATATATACTAGTGTCTGGATCAATTTTTGAGACTGATTTGAGTCTAGGGCAAAATGGTGAAAATCAATTTGTTGAAATCGAAGGACGGTCCGGTTCATGTAAAGTTTGTTATTTTGATTAATAACCATGTTAATAAAATTTCAGATGGAAATGGAGGACAAAAGTTGAGGTCAAGGAATCCAACTCTGGTTGCTACATTCAACCCTCCATCACGTAAGAAGAAAGGTCATCCACCATACAAGTGTTGGAGAAGACCTAACGCCTTCTACTCCAAATGCAATCAACTTGGACATGAAGCCGTGATCTGTAAAGTCAAAGATCAGGTGAAAGAAGTAGATGCACAGGTAGTTGATCAAGAAGAGGAAGAAGAAGATCAATTGTTTGTGGCCACTTGTTTCTCAGGCAAAGAATCAAGCGAGAGCTGGTTGATTGACAGTGGGTGCACAAATCATATGACGTATGACAAGGAGTTTTTTGAGGAATTAAGAGACACTGAAGTCAAGAGAGTGAGGATTGGCAACGGTGAACACTTGGAAGTCAAAGGAAAAGGCACAGTAACTATAACAAGTTATGAAGTGTTGTTTGAGAATGAACAGTGTTTGATCAAAGATTCTAGTGGAAAAGACTTGTTCAATGTCAAAATGAAAGGAAAAAGTTTTGCTCTAAATCCGATGGATGTAGAGCAGATGGCCTTTATATCCAAAGCTAGTGCCACTGAGATTTGGCACAAAAGACTTGGGCACTTTCATCATCGAGGTTTGCTTCAGATGCAGTCAAAGAAGCAGCAAAAGTCAGAGGTTGCGGGTGTATTTTGGAAATTCAAGGCTAGAGTTGAGAATGAAAGTGTATGCTTGATTCAAACGGTAAGATCAGATAATGGCAAGGAGTACACTTCAGAAACTTTTAACAGGTTTTGTGATGAGGCTGGAATTGAACATCAGTTGACAGCACCATACACTCCTCAACAGAATGGCGTCAGTGAAAGGAGGAATAGATTCATAATGGAGATGACGAGATGCATGCTTCATGAGAAGGATCTTCCAAAATGTTTTAAGATATGTACTGCTGTGTACCGAGGAAAGAAGAACTTAAAACCCAAAGAACCTGCCTTATTCAAAAGGAACAAAAGGAACATCTAA

Coding sequence (CDS)

ATGGTGAAAATCAATTTGTTGAAATCGAAGGACGGTCCGGTTCATGTAAAGTTTGTTATTTTGATTAATAACCATGTTAATAAAATTTCAGATGGAAATGGAGGACAAAAGTTGAGGTCAAGGAATCCAACTCTGGTTGCTACATTCAACCCTCCATCACGTAAGAAGAAAGGTCATCCACCATACAAGTGTTGGAGAAGACCTAACGCCTTCTACTCCAAATGCAATCAACTTGGACATGAAGCCGTGATCTGTAAAGTCAAAGATCAGGTGAAAGAAGTAGATGCACAGGTAGTTGATCAAGAAGAGGAAGAAGAAGATCAATTGTTTGTGGCCACTTGTTTCTCAGGCAAAGAATCAAGCGAGAGCTGGTTGATTGACAGTGGGTGCACAAATCATATGACGTATGACAAGGAGTTTTTTGAGGAATTAAGAGACACTGAAGTCAAGAGAGTGAGGATTGGCAACGGTGAACACTTGGAAGTCAAAGGAAAAGGCACAGTAACTATAACAAGTTATGAAGTGTTGTTTGAGAATGAACAGTGTTTGATCAAAGATTCTAGTGGAAAAGACTTGTTCAATGTCAAAATGAAAGGAAAAAGTTTTGCTCTAAATCCGATGGATGTAGAGCAGATGGCCTTTATATCCAAAGCTAGTGCCACTGAGATTTGGCACAAAAGACTTGGGCACTTTCATCATCGAGGTTTGCTTCAGATGCAGTCAAAGAAGCAGCAAAAGTCAGAGGTTGCGGGTGTATTTTGGAAATTCAAGGCTAGAGTTGAGAATGAAAGTGTATGCTTGATTCAAACGGTAAGATCAGATAATGGCAAGGAGTACACTTCAGAAACTTTTAACAGGTTTTGTGATGAGGCTGGAATTGAACATCAGTTGACAGCACCATACACTCCTCAACAGAATGGCGTCAGTGAAAGGAGGAATAGATTCATAATGGAGATGACGAGATGCATGCTTCATGAGAAGGATCTTCCAAAATGTTTTAAGATATGTACTGCTGTGTACCGAGGAAAGAAGAACTTAAAACCCAAAGAACCTGCCTTATTCAAAAGGAACAAAAGGAACATCTAA

Protein sequence

MVKINLLKSKDGPVHVKFVILINNHVNKISDGNGGQKLRSRNPTLVATFNPPSRKKKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKGTVTITSYEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFISKASATEIWHKRLGHFHHRGLLQMQSKKQQKSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCFKICTAVYRGKKNLKPKEPALFKRNKRNI

Homology

[Close]

BLAST of CmaCh11G014190 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.5e-17
Identity = 71/205 (34.63%), Postives = 93/205 (45.37%), Query Frame = 0


Query: 165 KGTVTITSYEVLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQM-------AFISK 224
           KGT        LF  +  +   +S +   N+     S    PM++E M        FI  
Sbjct: 450 KGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDD 509

Query: 225 ASATEIWHKRLGHFHHRGLLQMQSKKQQKSEVAGVFWKFKARVENESVCLIQTVRSDNGK 284
           AS  ++W   L               + K +V  VF KF A VE E+   ++ +RSDNG 
Sbjct: 510 AS-RKLWVYIL---------------KTKDQVFQVFQKFHALVERETGRKLKRLRSDNGG 569

Query: 285 EYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLPKCF---K 344
           EYTS  F  +C   GI H+ T P TPQ NGV+ER NR I+E  R ML    LPK F    
Sbjct: 570 EYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEA 629

Query: 345 ICTAVYRGKKNLKPKEPALFKRNKR 360
           + TA Y    N  P  P  F+  +R
Sbjct: 630 VQTACY--LINRSPSVPLAFEIPER 636

[Close]

BLAST of CmaCh11G014190 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-10
Identity = 40/98 (40.82%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 246 KSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQ 305
           KS+V  +F  F A+ E      +  +  DNG+EY S    +FC + GI + LT P+TPQ 
Sbjct: 522 KSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQL 581

Query: 306 NGVSERRNRFIMEMTRCMLHEKDLPKCF---KICTAVY 341
           NGVSER  R I E  R M+    L K F    + TA Y
Sbjct: 582 NGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATY 619

[Close]

BLAST of CmaCh11G014190 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-09
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 0


Query: 244 QQKSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTP 303
           +QKS+V   F  FK+ VEN     I T+ SDNG E+       +  + GI H  + P+TP
Sbjct: 541 KQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFV--VLRDYLSQHGISHFTSPPHTP 600

Query: 304 QQNGVSERRNRFIMEMTRCMLHEKDLPKCF 334
           + NG+SER++R I+EM   +L    +PK +
Sbjct: 601 EHNGLSERKHRHIVEMGLTLLSHASVPKTY 628

[Close]

BLAST of CmaCh11G014190 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.6e-08
Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 244 QQKSEVAGVFWKFKARVENESVCLIQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTP 303
           +QKS+V   F  FK  +EN     I T  SDNG E+ +     +  + GI H  + P+TP
Sbjct: 562 KQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVA--LWEYFSQHGISHLTSPPHTP 621

Query: 304 QQNGVSERRNRFIMEMTRCMLHEKDLPKCF 334
           + NG+SER++R I+E    +L    +PK +
Sbjct: 622 EHNGLSERKHRHIVETGLTLLSHASIPKTY 649

[Close]

BLAST of CmaCh11G014190 vs. ExPASy Swiss-Prot
Match: P22382 (Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1) OX=11732 GN=gag-pol PE=3 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 3.7e-05
Identity = 27/72 (37.50%), Postives = 37/72 (51.39%), Query Frame = 0


Query: 268  IQTVRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEK 327
            I  + +DNG  +TS+     C   GIEH    PY PQ  GV E +N+++ E     L EK
Sbjct: 1266 ISKLHTDNGPNFTSQEVETMCWWLGIEHTFGIPYNPQSQGVVENKNKYLKE-----LIEK 1325

Query: 328  DLPKCFKICTAV 340
                C ++ TAV
Sbjct: 1326 IREDCKELKTAV 1332

[Close]

BLAST of CmaCh11G014190 vs. ExPASy TrEMBL
Match: A0A1U8ILX5 (uncharacterized protein LOC107898077 OS=Gossypium hirsutum OX=3635 GN=LOC107898077 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 1.2e-104
Identity = 206/303 (67.99%), Postives = 232/303 (76.57%), Query Frame = 0


Query: 67  RPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLI 126
           +P+A  SKCNQLGHEAVICKVK QV+EVDAQVVDQ  EEEDQLFV TCFSGKESSESWLI
Sbjct: 197 KPDAKCSKCNQLGHEAVICKVKGQVQEVDAQVVDQ--EEEDQLFVITCFSGKESSESWLI 256

Query: 127 DSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKGTVTITSYE------------ 186
           DSGCTNHMTYDKE FEELR+TEVKR+RIGNGE+LEVKGKGTV ITSYE            
Sbjct: 257 DSGCTNHMTYDKELFEELRNTEVKRMRIGNGEYLEVKGKGTVAITSYEGTKFVSDVLFVP 316

Query: 187 ------------------VLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFIS 246
                             VLFEN+QCLI+D++G+DLFNVKMKGKSF  NPM+ EQMAF S
Sbjct: 317 KIDQNLLSVGQLLDKGYKVLFENKQCLIRDANGRDLFNVKMKGKSFTFNPMEKEQMAFKS 376

Query: 247 KASATEIWHKRLGHFHHRGLLQMQSKK------QQKSEVAGVFWKFKARVENESVCLIQT 306
           +   +       G+ ++   +   ++       +QKSEVAGVFWKFKAR+ENES C+IQ 
Sbjct: 377 RRMPS-----LNGNLYYIAFIDDLTRMCWIFLLKQKSEVAGVFWKFKARIENESGCMIQI 436

Query: 307 VRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLP 334
           +RSDNGKEYTSETFNRFC+EAGIEHQ TAPYTPQQNGVSERRN FIMEMTRCMLHEK+LP
Sbjct: 437 LRSDNGKEYTSETFNRFCEEAGIEHQWTAPYTPQQNGVSERRNIFIMEMTRCMLHEKNLP 492

[Close]

BLAST of CmaCh11G014190 vs. ExPASy TrEMBL
Match: A0A5D3DMJ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00670 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 1.3e-98
Identity = 193/383 (50.39%), Postives = 239/383 (62.40%), Query Frame = 0


Query: 56  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCF 115
           K+GHPP+KCWRRPNA  +KCNQ+GHEAVIC+  +Q + V+A++  QEEEEEDQLFVATCF
Sbjct: 265 KQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGVEAKIAYQEEEEEDQLFVATCF 324

Query: 116 SGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKGTVTITS--- 175
            G ES+ESWLIDSGCTNHMT+DKE F++L+ T + +VRIGNG+++ VKGKGT+ I S   
Sbjct: 325 VGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKG 384

Query: 176 ---------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALN 235
                                      ++V FENE CLIKD++ +D+F VKMKGKSF+LN
Sbjct: 385 TKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFSLN 444

Query: 236 PMDVEQMAFISKASATEIWHKRLGHFHHRGLLQM------------------------QS 295
           P++ EQ  F  K   T++WHKR+GH+HH+GLLQ+                        Q+
Sbjct: 445 PLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSCKACHFGKQN 504

Query: 296 KK---------------------------------------------------QQKSEVA 334
           +K                                                   + KSEVA
Sbjct: 505 RKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIFFLKFKSEVA 564

[Close]

BLAST of CmaCh11G014190 vs. ExPASy TrEMBL
Match: A0A5D3DBU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00950 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 1.3e-98
Identity = 193/383 (50.39%), Postives = 239/383 (62.40%), Query Frame = 0


Query: 56  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCF 115
           K+GHPP+KCWRRPNA  +KCNQ+GHEAVIC+  +Q + V+A++  QEEEEEDQLFVATCF
Sbjct: 381 KQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGVEAKIAYQEEEEEDQLFVATCF 440

Query: 116 SGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKGTVTITS--- 175
            G ES+ESWLIDSGCTNHMT+DKE F++L+ T + +VRIGNG+++ VKGKGT+ I S   
Sbjct: 441 VGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKG 500

Query: 176 ---------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALN 235
                                      ++V FENE CLIKD++ +D+F VKMKGKSF+LN
Sbjct: 501 TKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFSLN 560

Query: 236 PMDVEQMAFISKASATEIWHKRLGHFHHRGLLQM------------------------QS 295
           P++ EQ  F  K   T++WHKR+GH+HH+GLLQ+                        Q+
Sbjct: 561 PLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSCKACHFGKQN 620

Query: 296 KK---------------------------------------------------QQKSEVA 334
           +K                                                   + KSEVA
Sbjct: 621 RKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIFFLKFKSEVA 680

[Close]

BLAST of CmaCh11G014190 vs. ExPASy TrEMBL
Match: A0A5D3CMK4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001480 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 1.3e-98
Identity = 193/383 (50.39%), Postives = 239/383 (62.40%), Query Frame = 0


Query: 56  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCF 115
           K+GHPP+KCWRRPNA  +KCNQ+GHEAVIC+  +Q + V+A++  QEEEEEDQLFVATCF
Sbjct: 232 KQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGVEAKIAYQEEEEEDQLFVATCF 291

Query: 116 SGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKGTVTITS--- 175
            G ES+ESWLIDSGCTNHMT+DKE F++L+ T + +VRIGNG+++ VKGKGT+ I S   
Sbjct: 292 VGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKG 351

Query: 176 ---------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALN 235
                                      ++V FENE CLIKD++ +D+F VKMKGKSF+LN
Sbjct: 352 TKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFSLN 411

Query: 236 PMDVEQMAFISKASATEIWHKRLGHFHHRGLLQM------------------------QS 295
           P++ EQ  F  K   T++WHKR+GH+HH+GLLQ+                        Q+
Sbjct: 412 PLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSCKACHFGKQN 471

Query: 296 KK---------------------------------------------------QQKSEVA 334
           +K                                                   + KSEVA
Sbjct: 472 RKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIFFLKFKSEVA 531

[Close]

BLAST of CmaCh11G014190 vs. ExPASy TrEMBL
Match: A0A5D3E2V7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00370 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 3.8e-98
Identity = 192/383 (50.13%), Postives = 239/383 (62.40%), Query Frame = 0


Query: 56  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCF 115
           K+GHPP+KCWRRPNA  +KCNQ+GHEAVIC+  +Q + V+A++  QEEEEEDQLFVATCF
Sbjct: 265 KQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGVEAKIAYQEEEEEDQLFVATCF 324

Query: 116 SGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKGTVTITS--- 175
            G ES+ESWLIDSGCTNHMT+DKE F++L+ T + +VRIGNG+++ VKGKGT+ I S   
Sbjct: 325 VGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKG 384

Query: 176 ---------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALN 235
                                      ++V FENE CLIKD++ +D+F VKMKGKSF+LN
Sbjct: 385 TKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFSLN 444

Query: 236 PMDVEQMAFISKASATEIWHKRLGHFHHRGLLQM------------------------QS 295
           P++ +Q  F  K   T++WHKR+GH+HH+GLLQ+                        Q+
Sbjct: 445 PLEEKQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSCKACHFGKQN 504

Query: 296 KK---------------------------------------------------QQKSEVA 334
           +K                                                   + KSEVA
Sbjct: 505 RKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIFFLKFKSEVA 564

[Close]

BLAST of CmaCh11G014190 vs. NCBI nr
Match: XP_016679117.1 (uncharacterized protein LOC107898077 [Gossypium hirsutum])

HSP 1 Score: 389.8 bits (1000), Expect = 2.5e-104
Identity = 206/303 (67.99%), Postives = 232/303 (76.57%), Query Frame = 0


Query: 67  RPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCFSGKESSESWLI 126
           +P+A  SKCNQLGHEAVICKVK QV+EVDAQVVDQ  EEEDQLFV TCFSGKESSESWLI
Sbjct: 197 KPDAKCSKCNQLGHEAVICKVKGQVQEVDAQVVDQ--EEEDQLFVITCFSGKESSESWLI 256

Query: 127 DSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKGTVTITSYE------------ 186
           DSGCTNHMTYDKE FEELR+TEVKR+RIGNGE+LEVKGKGTV ITSYE            
Sbjct: 257 DSGCTNHMTYDKELFEELRNTEVKRMRIGNGEYLEVKGKGTVAITSYEGTKFVSDVLFVP 316

Query: 187 ------------------VLFENEQCLIKDSSGKDLFNVKMKGKSFALNPMDVEQMAFIS 246
                             VLFEN+QCLI+D++G+DLFNVKMKGKSF  NPM+ EQMAF S
Sbjct: 317 KIDQNLLSVGQLLDKGYKVLFENKQCLIRDANGRDLFNVKMKGKSFTFNPMEKEQMAFKS 376

Query: 247 KASATEIWHKRLGHFHHRGLLQMQSKK------QQKSEVAGVFWKFKARVENESVCLIQT 306
           +   +       G+ ++   +   ++       +QKSEVAGVFWKFKAR+ENES C+IQ 
Sbjct: 377 RRMPS-----LNGNLYYIAFIDDLTRMCWIFLLKQKSEVAGVFWKFKARIENESGCMIQI 436

Query: 307 VRSDNGKEYTSETFNRFCDEAGIEHQLTAPYTPQQNGVSERRNRFIMEMTRCMLHEKDLP 334
           +RSDNGKEYTSETFNRFC+EAGIEHQ TAPYTPQQNGVSERRN FIMEMTRCMLHEK+LP
Sbjct: 437 LRSDNGKEYTSETFNRFCEEAGIEHQWTAPYTPQQNGVSERRNIFIMEMTRCMLHEKNLP 492

[Close]

BLAST of CmaCh11G014190 vs. NCBI nr
Match: XP_003613757.4 (uncharacterized protein LOC11413243 [Medicago truncatula])

HSP 1 Score: 373.6 bits (958), Expect = 1.9e-99
Identity = 202/393 (51.40%), Postives = 243/393 (61.83%), Query Frame = 0


Query: 51  PPSR--KKKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEE-EED 110
           PP +   K GHPP++CWRRPNA  SKCNQ+GHEAVIC+ + + +E DAQV DQEEE EED
Sbjct: 257 PPCQHCNKMGHPPFRCWRRPNAKCSKCNQIGHEAVICRTEFKEQEADAQVADQEEEDEED 316

Query: 111 QLFVATCFSGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKGT 170
           +LFVATCFSG +SS+SWLIDSGCTNHMTYDKE F+ELR ++  +VRIGNG+++ VKGKGT
Sbjct: 317 RLFVATCFSGSDSSDSWLIDSGCTNHMTYDKEIFKELRSSKTSKVRIGNGQNISVKGKGT 376

Query: 171 VTITS------------------------------YEVLFENEQCLIKDSSGKDLFNVKM 230
           + I S                              ++V FE++ CLIKD+SG+++F VKM
Sbjct: 377 IAIVSCSGTKLISDVLYVPEIDQNLLSVGQLLEKGFKVHFEDKHCLIKDASGQEMFKVKM 436

Query: 231 KGKSFALNPMDVEQMAFISKASATEIWHKRLGHFHHRGLLQMQSKK-------------- 290
           +GKSF LNP++ +Q AF  K S TE+WHKRLGH+HH+GLL +QSKK              
Sbjct: 437 RGKSFTLNPLEEKQSAFTVKESVTEMWHKRLGHYHHQGLLLLQSKKLVRDLPMLEDTLPH 496

Query: 291 ------------------------------------------------------------ 334
                                                                       
Sbjct: 497 CQACQYGKQHRQSFPKSAWRATQKLQLIHTDLCGPHRTSSLNSSLYYIVFIDDFTRFCWI 556

[Close]

BLAST of CmaCh11G014190 vs. NCBI nr
Match: TYJ95793.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04080.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK07482.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK23562.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK24808.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 369.8 bits (948), Expect = 2.7e-98
Identity = 193/383 (50.39%), Postives = 239/383 (62.40%), Query Frame = 0


Query: 56  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCF 115
           K+GHPP+KCWRRPNA  +KCNQ+GHEAVIC+  +Q + V+A++  QEEEEEDQLFVATCF
Sbjct: 265 KQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGVEAKIAYQEEEEEDQLFVATCF 324

Query: 116 SGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKGTVTITS--- 175
            G ES+ESWLIDSGCTNHMT+DKE F++L+ T + +VRIGNG+++ VKGKGT+ I S   
Sbjct: 325 VGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKG 384

Query: 176 ---------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALN 235
                                      ++V FENE CLIKD++ +D+F VKMKGKSF+LN
Sbjct: 385 TKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFSLN 444

Query: 236 PMDVEQMAFISKASATEIWHKRLGHFHHRGLLQM------------------------QS 295
           P++ EQ  F  K   T++WHKR+GH+HH+GLLQ+                        Q+
Sbjct: 445 PLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSCKACHFGKQN 504

Query: 296 KK---------------------------------------------------QQKSEVA 334
           +K                                                   + KSEVA
Sbjct: 505 RKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIFFLKFKSEVA 564

[Close]

BLAST of CmaCh11G014190 vs. NCBI nr
Match: TYK12368.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 369.8 bits (948), Expect = 2.7e-98
Identity = 193/383 (50.39%), Postives = 239/383 (62.40%), Query Frame = 0


Query: 56  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCF 115
           K+GHPP+KCWRRPNA  +KCNQ+GHEAVIC+  +Q + V+A++  QEEEEEDQLFVATCF
Sbjct: 232 KQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGVEAKIAYQEEEEEDQLFVATCF 291

Query: 116 SGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKGTVTITS--- 175
            G ES+ESWLIDSGCTNHMT+DKE F++L+ T + +VRIGNG+++ VKGKGT+ I S   
Sbjct: 292 VGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKG 351

Query: 176 ---------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALN 235
                                      ++V FENE CLIKD++ +D+F VKMKGKSF+LN
Sbjct: 352 TKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFSLN 411

Query: 236 PMDVEQMAFISKASATEIWHKRLGHFHHRGLLQM------------------------QS 295
           P++ EQ  F  K   T++WHKR+GH+HH+GLLQ+                        Q+
Sbjct: 412 PLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSCKACHFGKQN 471

Query: 296 KK---------------------------------------------------QQKSEVA 334
           +K                                                   + KSEVA
Sbjct: 472 RKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIFFLKFKSEVA 531

[Close]

BLAST of CmaCh11G014190 vs. NCBI nr
Match: TYK21117.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 369.8 bits (948), Expect = 2.7e-98
Identity = 193/383 (50.39%), Postives = 239/383 (62.40%), Query Frame = 0


Query: 56  KKGHPPYKCWRRPNAFYSKCNQLGHEAVICKVKDQVKEVDAQVVDQEEEEEDQLFVATCF 115
           K+GHPP+KCWRRPNA  +KCNQ+GHEAVIC+  +Q + V+A++  QEEEEEDQLFVATCF
Sbjct: 381 KQGHPPFKCWRRPNAKCTKCNQMGHEAVICRNNNQQQGVEAKIAYQEEEEEDQLFVATCF 440

Query: 116 SGKESSESWLIDSGCTNHMTYDKEFFEELRDTEVKRVRIGNGEHLEVKGKGTVTITS--- 175
            G ES+ESWLIDSGCTNHMT+DKE F++L+ T + +VRIGNG+++ VKGKGT+ I S   
Sbjct: 441 VGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKG 500

Query: 176 ---------------------------YEVLFENEQCLIKDSSGKDLFNVKMKGKSFALN 235
                                      ++V FENE CLIKD++ +D+F VKMKGKSF+LN
Sbjct: 501 TKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEYCLIKDAANQDIFKVKMKGKSFSLN 560

Query: 236 PMDVEQMAFISKASATEIWHKRLGHFHHRGLLQM------------------------QS 295
           P++ EQ  F  K   T++WHKR+GH+HH+GLLQ+                        Q+
Sbjct: 561 PLEEEQSVFALKEDETQLWHKRVGHYHHQGLLQLTELALDFPKLSEEISSCKACHFGKQN 620

Query: 296 KK---------------------------------------------------QQKSEVA 334
           +K                                                   + KSEVA
Sbjct: 621 RKSFPKSSWRATQKLQLIHTDVAGPQRTPSLKGSLYYIAFIDDFTRMCWIFFLKFKSEVA 680

The following BLAST results are available for this feature:

BLAST of CmaCh11G014190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.5e-17	34.63	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.3e-10	40.82	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.4e-09	38.89	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.6e-08	36.67	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P22382	3.7e-05	37.50	Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate GB1) OX=11732 GN=g...	[more]

BLAST of CmaCh11G014190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1U8ILX5	1.2e-104	67.99	uncharacterized protein LOC107898077 OS=Gossypium hirsutum OX=3635 GN=LOC1078980...	[more]
A0A5D3DMJ1	1.3e-98	50.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DBU0	1.3e-98	50.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CMK4	1.3e-98	50.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3E2V7	3.8e-98	50.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of CmaCh11G014190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016679117.1	2.5e-104	67.99	uncharacterized protein LOC107898077 [Gossypium hirsutum]	[more]
XP_003613757.4	1.9e-99	51.40	uncharacterized protein LOC11413243 [Medicago truncatula]	[more]
TYJ95793.1	2.7e-98	50.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK12368.1	2.7e-98	50.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK21117.1	2.7e-98	50.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of CmaCh11G014190 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 240..303 e-value: 6.9E-10 score: 39.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 202..361 score: 15.180078
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 233..356 e-value: 2.1E-24 score: 88.2
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 52..170
None	No IPR available	PANTHER	PTHR34222:SF31	SUBFAMILY NOT NAMED	coord: 52..170
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 245..330

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G014190.1	CmaCh11G014190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0043167	ion binding
molecular_function	GO:0003676	nucleic acid binding