CmaCh11G013980 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G013980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr11: 9202363 .. 9203934 (+)
RNA-Seq Expression	CmaCh11G013980
Synteny	CmaCh11G013980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTCCAAGTTACAAGTTTTGTGGGAGCAAAGCAAAAGGGTGAGAGGGGCAAGGAAGAAACAAGAAAGAGATTGAAGAAACCAAACAAATCCCAATTTCCTGCCTCTTTCTGGGATTGCTAAAACAAAATCAGAGCAACACAACACACAAACAACCGATTCCATTAACCCTTTCTGAAAGCAATGTATAGCAGAAATCGAAATTTCATACTGATAATCGAGGCCAGAAATATGCTCCTCACACGGAAAGATTCCTCGCCAGAATCCCTTCAAACGAAATCCCAGGTCCAAACGCCAGAATCAATCCCCATTCCTCAATTTCCCCACCACCCATCTTCGTCTTCAAGCTCTCATCCACCATGTATTCCAACACATACACGATTGTGTTACTGCTCGCATTTCCATAGTCCATCAGAGCTTGCCGGCTCGCCTTCAGCTTCTCAGGTAACAGTTCCGAGTCTCTTCTCTAGCTTATTCAGTATCGCTGGCTCACCTGGATGTCTGCCCAAAAAATTTTGTTGTATTCTTTCTCGTGCAGCCCAACTGTTTGAAGAAATGTCTCACAGAAACTTTCGATGTTATCTTTTCGATTATCTGAGGAAGTTCTCTTGCTATTGTGAAGCTAATACCCTCCTCTGACATTCTCCCATCGATTACGTTCTGGGTGTTTGGAATGAATTTCTGGGTTGCGGTGTGCAGCTCAAAGAGTGGCCGTTCAATGGGCCAAAACAGGGTCCGCGCCAATTAGCATTGCCCCAGCACCATCCCCAAATAGCGCCACGCCTACCAGATCGTATGGACGACGGGCACTTGATGGCTTGTAGCTGTAAAGAAATCGATGTTTATGTTTAAATTCTGAGAACAAATGGTGTATGAGCTTTTGGGGGCGTTGAAAAGTTACCCAATAATGGTGGTTTCAGAGGTGACAAGCAGAACTCGGCTTCCGGGGTTGTTTTCAGCCAAGTCTTTGACGACTCTAAGGCCTGCCACGCCTCCAGAGCAACCCATGAAGTAAAGCATGAACCGTTGGGTGTGAGGGCTGAGTCCAAGGCCTCTTGCTAGGAAGAGATCACCACCAGGCAGGCGAGCTTCACTTGAAGAGACATAGACTAAATGGGTAATGTGTGAAAGTGGCCTTCCCCAGTTCTTAATAGCAGCTTGTGAGGCTTCAATGGCCATGTCTGTCACAGCTTTGTTGCAGATCTCCAGTCTTTGCTTTATGGTTGCTTGGCCTTCCATTGCCATCTCTGGGTGCTTCTTCAGGATCTCTTCTGACATCACCACGTATCTAGTTTTGACTGATGTTGTCTTGCCTGTGGATTGCCATTAGAAGATGACAGTTATTTCAGTTAAAGAGGAGCAATTTTAACAACCACTAGCATCTATCAGCTTCAACTAAATGTCAATCTCAGGTATGTAAACCAAAACTCAGATGAAATCATCTTAGAAGTGAAATTATAAAATTCTGAAATCATCTTAGAAGTTCTATCCGATCAATGAAATATGAAATTTTATTTTGGATTTAGAATCTCTGCACCACCCCTGCCCCCGCCCCCGCCTGAGTAAAGAAAAG

mRNA sequence

CATTCCAAGTTACAAGTTTTGTGGGAGCAAAGCAAAAGGGTGAGAGGGGCAAGGAAGAAACAAGAAAGAGATTGAAGAAACCAAACAAATCCCAATTTCCTGCCTCTTTCTGGGATTGCTAAAACAAAATCAGAGCAACACAACACACAAACAACCGATTCCATTAACCCTTTCTGAAAGCAATGTATAGCAGAAATCGAAATTTCATACTGATAATCGAGGCCAGAAATATGCTCCTCACACGGAAAGATTCCTCGCCAGAATCCCTTCAAACGAAATCCCAGGTCCAAACGCCAGAATCAATCCCCATTCCTCAATTTCCCCACCACCCATCTTCGTCTTCAAGCTCTCATCCACCATGTATTCCAACACATACACGATTGTGTTACTGCTCGCATTTCCATAGTCCATCAGAGCTTGCCGGCTCGCCTTCAGCTTCTCAGCTCAAAGAGTGGCCGTTCAATGGGCCAAAACAGGGTCCGCGCCAATTAGCATTGCCCCAGCACCATCCCCAAATAGCGCCACGCCTACCAGATCGTATGGACGACGGGCACTTGATGGCTTGTAGCTGTAAAGAAATCGATTTACCCAATAATGGTGGTTTCAGAGGTGACAAGCAGAACTCGGCTTCCGGGGTTGTTTTCAGCCAAGTCTTTGACGACTCTAAGGCCTGCCACGCCTCCAGAGCAACCCATGAAGTAAAGCATGAACCGTTGGAATCTCTGCACCACCCCTGCCCCCGCCCCCGCCTGAGTAAAGAAAAG

Coding sequence (CDS)

ATGTATAGCAGAAATCGAAATTTCATACTGATAATCGAGGCCAGAAATATGCTCCTCACACGGAAAGATTCCTCGCCAGAATCCCTTCAAACGAAATCCCAGGTCCAAACGCCAGAATCAATCCCCATTCCTCAATTTCCCCACCACCCATCTTCGTCTTCAAGCTCTCATCCACCATGTATTCCAACACATACACGATTGTGTTACTGCTCGCATTTCCATAGTCCATCAGAGCTTGCCGGCTCGCCTTCAGCTTCTCAGCTCAAAGAGTGGCCGTTCAATGGGCCAAAACAGGGTCCGCGCCAATTAGCATTGCCCCAGCACCATCCCCAAATAGCGCCACGCCTACCAGATCGTATGGACGACGGGCACTTGATGGCTTGTAGCTGTAAAGAAATCGATTTACCCAATAATGGTGGTTTCAGAGGTGACAAGCAGAACTCGGCTTCCGGGGTTGTTTTCAGCCAAGTCTTTGACGACTCTAAGGCCTGCCACGCCTCCAGAGCAACCCATGAAGTAAAGCATGAACCGTTGGAATCTCTGCACCACCCCTGCCCCCGCCCCCGCCTGAGTAAAGAAAAG

Protein sequence

MYSRNRNFILIIEARNMLLTRKDSSPESLQTKSQVQTPESIPIPQFPHHPSSSSSSHPPCIPTHTRLCYCSHFHSPSELAGSPSASQLKEWPFNGPKQGPRQLALPQHHPQIAPRLPDRMDDGHLMACSCKEIDLPNNGGFRGDKQNSASGVVFSQVFDDSKACHASRATHEVKHEPLESLHHPCPRPRLSKEK

Homology

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BLAST of CmaCh11G013980 vs. NCBI nr
Match: KAG7011747.1 (hypothetical protein SDJN02_26653, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.3 bits (277), Expect = 9.4e-21
Identity = 57/72 (79.17%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 18 LLTRKDSSPESLQTKSQVQTPESIPIPQFPHHPSSSSSSHPPCIPTHTRLCYCSHFHSPS 77
          ++ R+DSS ESLQTKSQVQ PESIPIPQFPHH SSSSS  PPCI   T+ CYCSHFHSPS
Sbjct: 1  MVPRQDSSSESLQTKSQVQMPESIPIPQFPHHSSSSSSFLPPCILVRTQSCYCSHFHSPS 60

Query: 78 ELAGSPSASQLK 90
          ELAGSPSASQ K
Sbjct: 61 ELAGSPSASQPK 72

The following BLAST results are available for this feature:

BLAST of CmaCh11G013980 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G013980 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G013980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011747.1	9.4e-21	79.17	hypothetical protein SDJN02_26653, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh11G013980 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G013980.1	CmaCh11G013980.1	mRNA