CmaCh11G012960 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G012960
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	RING-type domain-containing protein
Location	Cma_Chr11: 8643066 .. 8643452 (+)
RNA-Seq Expression	CmaCh11G012960
Synteny	CmaCh11G012960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAGCTTAGCATTAGGTCGAGGTCCAACCTGTGTGGCCACCATTGTCTTCTTCACTTGTGTGTGGATCCCTCTGTGTCAACTGAAGACGTTCCTCGAGAGCATGATCGGGATTCTGTCAGGCAGGACGTATCAGCAGCTCACAATGGAGTTGCCACCGTGCGAGGTAAAACTTCCAGTTTGTAGGTTCGAAGAGCTGCATCGTGGCGGCAGATCGGAAGAGGATATTTGCTCCGTTTGCTTGGCGGAGTTCACCCGAGAAGATTTGGTGAGCCAACTGCATAGATGTACCCATATTTTTCATTATGAATGTATTGAGAATTGGCTCCATAGATATCATTTTACCTGCCCTTTGTGCAGATCCCTTCTCTCTTCTACACTGTAA

mRNA sequence

ATGATAAGCTTAGCATTAGGTCGAGGTCCAACCTGTGTGGCCACCATTGTCTTCTTCACTTGTGTGTGGATCCCTCTGTGTCAACTGAAGACGTTCCTCGAGAGCATGATCGGGATTCTGTCAGGCAGGACGTATCAGCAGCTCACAATGGAGTTGCCACCGTGCGAGGTAAAACTTCCAGTTTGTAGGTTCGAAGAGCTGCATCGTGGCGGCAGATCGGAAGAGGATATTTGCTCCGTTTGCTTGGCGGAGTTCACCCGAGAAGATTTGGTGAGCCAACTGCATAGATGTACCCATATTTTTCATTATGAATGTATTGAGAATTGGCTCCATAGATATCATTTTACCTGCCCTTTGTGCAGATCCCTTCTCTCTTCTACACTGTAA

Coding sequence (CDS)

ATGATAAGCTTAGCATTAGGTCGAGGTCCAACCTGTGTGGCCACCATTGTCTTCTTCACTTGTGTGTGGATCCCTCTGTGTCAACTGAAGACGTTCCTCGAGAGCATGATCGGGATTCTGTCAGGCAGGACGTATCAGCAGCTCACAATGGAGTTGCCACCGTGCGAGGTAAAACTTCCAGTTTGTAGGTTCGAAGAGCTGCATCGTGGCGGCAGATCGGAAGAGGATATTTGCTCCGTTTGCTTGGCGGAGTTCACCCGAGAAGATTTGGTGAGCCAACTGCATAGATGTACCCATATTTTTCATTATGAATGTATTGAGAATTGGCTCCATAGATATCATTTTACCTGCCCTTTGTGCAGATCCCTTCTCTCTTCTACACTGTAA

Protein sequence

MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLLSSTL

Homology

[Close]

BLAST of CmaCh11G012960 vs. ExPASy Swiss-Prot
Match: Q9SZL4 (RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.2e-16
Identity = 50/134 (37.31%), Postives = 64/134 (47.76%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVFFTCVWIPLCQLK----------TFLESMIGILSGRTYQQLTM 60
           MIS+   R P C A IVF+TCV IPL +LK              +++G++ G   ++   
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLKKNGGDADAHDDDGYNLVGVMFGDKEKE--- 60

Query: 61  ELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWL 120
                                  EE  C +CL EF  ED V+ L RC H+FH  CIE WL
Sbjct: 61  -----------------------EEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWL 108

Query: 121 HRYHFTCPLCRSLL 125
            R H TCPLCRS +
Sbjct: 121 LRGHLTCPLCRSFV 108

[Close]

BLAST of CmaCh11G012960 vs. ExPASy Swiss-Prot
Match: Q9SI09 (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-09
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 58  KLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTC 117
           + P  RFE L R  +  ++ CSVCL++F  +  +++L +C H+FH  C+E W+  ++ TC
Sbjct: 83  RTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL-KCGHLFHKTCLEKWIDYWNITC 142

Query: 118 PLCRSLL 125
           PLCR+ L
Sbjct: 143 PLCRTPL 148

[Close]

BLAST of CmaCh11G012960 vs. ExPASy Swiss-Prot
Match: Q9SUS5 (E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-09
Identity = 33/99 (33.33%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 25  PLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAE 84
           P   L +FL+      S  T   L+         +PV RF +L       ED C+VCL++
Sbjct: 35  PYIGLPSFLDHNETSRSDPTRLALSTSATLANELIPVVRFSDLL---TDPEDCCTVCLSD 94

Query: 85  FTREDLVSQLHRCTHIFHYECIENWLHRYH-FTCPLCRS 123
           F  +D + QL +C H+FH+ C++ W+   +  TCP+CR+
Sbjct: 95  FVSDDKIRQLPKCGHVFHHRCLDRWIVDCNKITCPICRN 130

[Close]

BLAST of CmaCh11G012960 vs. ExPASy Swiss-Prot
Match: Q9SUS4 (Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RHA1A PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.6e-09
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 59  LPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYH-FTC 118
           +PV RF +L       ED C+VCL++F  +D V QL +C H+FH+ C++ W+  Y+   C
Sbjct: 70  IPVVRFSDL---PTDPEDCCTVCLSDFESDDKVRQLPKCGHVFHHYCLDRWIVDYNKMKC 129

Query: 119 PLCR 122
           P+CR
Sbjct: 130 PVCR 130

[Close]

BLAST of CmaCh11G012960 vs. ExPASy Swiss-Prot
Match: Q9ZT50 (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.6e-09
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 70  GGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLLSS 127
           GG    D C VCL++    + V +L  C H+FH +C+E WLH+++FTCPLCRS L S
Sbjct: 79  GGGGGSD-CVVCLSKLKEGEEVRKL-ECRHVFHKKCLEGWLHQFNFTCPLCRSALVS 133

[Close]

BLAST of CmaCh11G012960 vs. ExPASy TrEMBL
Match: A0A0A0K513 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G029960 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.8e-41
Identity = 87/128 (67.97%), Postives = 95/128 (74.22%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLP 60
           MI +AL RG   +ATIVF TCVWIPL QLK  + SM  ILSGRT Q LT    PCEVKL 
Sbjct: 29  MIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEVKLL 88

Query: 61  VCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTCPLC 120
           VCRFEEL R   SEE+ICSVCL EFTRE LVSQLHRC+H+FH ECIE+WL R  FTCPLC
Sbjct: 89  VCRFEELQRAVGSEEEICSVCLTEFTREHLVSQLHRCSHVFHLECIESWLQRNQFTCPLC 148

Query: 121 RSLLSSTL 129
           RS +   L
Sbjct: 149 RSFIFQPL 156

[Close]

BLAST of CmaCh11G012960 vs. ExPASy TrEMBL
Match: A0A7J8LWW2 (RING-type domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_026952 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.6e-25
Identity = 58/128 (45.31%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLP 60
           MISL      +C A ++F+TCVWIP  Q K F+ S++G +  R+  ++        V LP
Sbjct: 1   MISLLCSNSGSCTAALIFYTCVWIPFIQFKRFVLSLLGFVFPRSSGRI-------NVSLP 60

Query: 61  VCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFT 120
           V RFE+L         +EE++CS+CL EF  +D VSQ+ +C H+FH  CIE W+ R HFT
Sbjct: 61  VARFEDLKFSAGCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFT 120

Query: 121 CPLCRSLL 125
           CPLCRS+L
Sbjct: 121 CPLCRSVL 121

[Close]

BLAST of CmaCh11G012960 vs. ExPASy TrEMBL
Match: A0A0D2SLB9 (RING-type domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_005G215300 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLP 60
           MISL      +C A ++F+TCVWIP  Q K F+ S++G +  R+   +        V LP
Sbjct: 1   MISLVCSNSGSCTAALIFYTCVWIPFIQFKIFVLSLLGFVFPRSCGTI-------NVSLP 60

Query: 61  VCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFT 120
           V RFE+L         +EE++CS+CL EF  +D VSQ+ +C H+FH  CIE W+ R HFT
Sbjct: 61  VARFEDLKFSAGCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFT 120

Query: 121 CPLCRSLL 125
           CPLCRS+L
Sbjct: 121 CPLCRSVL 121

[Close]

BLAST of CmaCh11G012960 vs. ExPASy TrEMBL
Match: A0A5D2M180 (RING-type domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_D02G240400v1 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLP 60
           MISL      +C A ++F+TCVWIP  Q K F+ S++G +  R+   +        V LP
Sbjct: 1   MISLVCSNSGSCTAALIFYTCVWIPFIQFKIFVLSLLGFVFPRSCGTI-------NVSLP 60

Query: 61  VCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFT 120
           V RFE+L         +EE++CS+CL EF  +D VSQ+ +C H+FH  CIE W+ R HFT
Sbjct: 61  VARFEDLKFSAGCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFT 120

Query: 121 CPLCRSLL 125
           CPLCRS+L
Sbjct: 121 CPLCRSVL 121

[Close]

BLAST of CmaCh11G012960 vs. ExPASy TrEMBL
Match: A0A1U8JQC4 (RING-H2 finger protein ATL18-like OS=Gossypium hirsutum OX=3635 GN=LOC107908195 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 3.4e-25
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLP 60
           MISL      +C A ++F+TCVWIP  Q K F+ S++G +  R+   +        V LP
Sbjct: 1   MISLVCSNSGSCTAALIFYTCVWIPFIQFKIFVLSLLGFVFPRSCGTI-------NVSLP 60

Query: 61  VCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFT 120
           V RFE+L         +EE++CS+CL EF  +D VSQ+ +C H+FH  CIE W+ R HFT
Sbjct: 61  VARFEDLKFSAGCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFT 120

Query: 121 CPLCRSLL 125
           CPLCRS+L
Sbjct: 121 CPLCRSVL 121

[Close]

BLAST of CmaCh11G012960 vs. NCBI nr
Match: KAG6589096.1 (AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.6 bits (444), Expect = 2.7e-40
Identity = 84/95 (88.42%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLP 60
          MISLALGRGPTCVATIV FTCVWIPLCQLKTFLESMIGILSGRTYQQLTMEL PCEVKLP
Sbjct: 1  MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60

Query: 61 VCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLH 96
          VCRF+ELHRG  SEEDICSVCLA FT EDL   +H
Sbjct: 61 VCRFKELHRGSASEEDICSVCLAGFTGEDLTKMIH 95

[Close]

BLAST of CmaCh11G012960 vs. NCBI nr
Match: KAG7022803.1 (AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-39
Identity = 83/91 (91.21%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLP 60
          MISLALGRGPTCVATIV FTCVWIPLCQLKTFLESMIGILSGRTYQQLTMEL PCEVKLP
Sbjct: 1  MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60

Query: 61 VCRFEELHRGGRSEEDICSVCLAEFTREDLV 92
          VCRFEELHRG  SEEDICSVCLA +T EDL+
Sbjct: 61 VCRFEELHRGSASEEDICSVCLAGYTGEDLI 91

[Close]

BLAST of CmaCh11G012960 vs. NCBI nr
Match: MBA0556883.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 124.8 bits (312), Expect = 5.4e-25
Identity = 58/128 (45.31%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLP 60
           MISL      +C A ++F+TCVWIP  Q K F+ S++G +  R+  ++        V LP
Sbjct: 1   MISLLCSNSGSCTAALIFYTCVWIPFIQFKRFVLSLLGFVFPRSSGRI-------NVSLP 60

Query: 61  VCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFT 120
           V RFE+L         +EE++CS+CL EF  +D VSQ+ +C H+FH  CIE W+ R HFT
Sbjct: 61  VARFEDLKFSAGCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFT 120

Query: 121 CPLCRSLL 125
           CPLCRS+L
Sbjct: 121 CPLCRSVL 121

[Close]

BLAST of CmaCh11G012960 vs. NCBI nr
Match: XP_012481249.1 (PREDICTED: RING-H2 finger protein ATL18-like [Gossypium raimondii] >XP_016690928.1 RING-H2 finger protein ATL18-like [Gossypium hirsutum] >KAB2042515.1 hypothetical protein ES319_D02G221000v1 [Gossypium barbadense] >MBA0614000.1 hypothetical protein [Gossypium davidsonii] >MBA0649206.1 hypothetical protein [Gossypium klotzschianum] >TYG80698.1 hypothetical protein ES288_D02G237200v1 [Gossypium darwinii] >TYH85074.1 hypothetical protein ES332_D02G240400v1 [Gossypium tomentosum] >TYI94739.1 hypothetical protein E1A91_D02G226200v1 [Gossypium mustelinum])

HSP 1 Score: 124.4 bits (311), Expect = 7.1e-25
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLP 60
           MISL      +C A ++F+TCVWIP  Q K F+ S++G +  R+   +        V LP
Sbjct: 1   MISLVCSNSGSCTAALIFYTCVWIPFIQFKIFVLSLLGFVFPRSCGTI-------NVSLP 60

Query: 61  VCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFT 120
           V RFE+L         +EE++CS+CL EF  +D VSQ+ +C H+FH  CIE W+ R HFT
Sbjct: 61  VARFEDLKFSAGCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFT 120

Query: 121 CPLCRSLL 125
           CPLCRS+L
Sbjct: 121 CPLCRSVL 121

[Close]

BLAST of CmaCh11G012960 vs. NCBI nr
Match: MBA0682837.1 (hypothetical protein [Gossypium aridum])

HSP 1 Score: 124.0 bits (310), Expect = 9.2e-25
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVFFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELPPCEVKLP 60
           MISL      +C A ++F+TCVWIP  Q K F+ S++G +  R+   +        V LP
Sbjct: 1   MISLLCSNSGSCTAALIFYTCVWIPFIQFKRFVLSLLGFVFPRSRGTI-------NVSLP 60

Query: 61  VCRFEELHRG----GRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFT 120
           V RFE+L         +EE++CS+CL EF  +D VSQ+ +C H+FH  CIE W+ R HFT
Sbjct: 61  VARFEDLKFSAGCCNAAEEEVCSICLVEFDNDDAVSQIQKCKHVFHMNCIEKWMERGHFT 120

Query: 121 CPLCRSLL 125
           CPLCRS+L
Sbjct: 121 CPLCRSVL 121

[Close]

BLAST of CmaCh11G012960 vs. TAIR 10
Match: AT4G38140.1 (RING/U-box superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-17
Identity = 50/134 (37.31%), Postives = 64/134 (47.76%), Query Frame = 0


Query: 1   MISLALGRGPTCVATIVFFTCVWIPLCQLK----------TFLESMIGILSGRTYQQLTM 60
           MIS+   R P C A IVF+TCV IPL +LK              +++G++ G   ++   
Sbjct: 1   MISMLFPRSPLCTAAIVFYTCVCIPLGRLKKNGGDADAHDDDGYNLVGVMFGDKEKE--- 60

Query: 61  ELPPCEVKLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWL 120
                                  EE  C +CL EF  ED V+ L RC H+FH  CIE WL
Sbjct: 61  -----------------------EEICCPICLVEFEAEDAVTHLPRCAHLFHINCIEPWL 108

Query: 121 HRYHFTCPLCRSLL 125
            R H TCPLCRS +
Sbjct: 121 LRGHLTCPLCRSFV 108

[Close]

BLAST of CmaCh11G012960 vs. TAIR 10
Match: AT1G24580.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11
Identity = 35/109 (32.11%), Postives = 55/109 (50.46%), Query Frame = 0


Query: 24  IPLCQLKTFLESMIGILSGRTYQQLTMELPP----CEVKLPVCRFEELHRGGRSEED--- 83
           + +  LK  + S+  I++  T   + ++  P       ++ + +F+ L      EE+   
Sbjct: 5   VSITLLKNMVRSVFQIVASETESSMEIDDEPEDDFVTRRISITQFKSLCENIEEEEEEKG 64

Query: 84  -ICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTCPLCRSLL 125
             C VCL  F  E+ VS+L  C H FH  C++NW    H TCPLCRS+L
Sbjct: 65  VECCVCLCGFKEEEEVSELVSCKHFFHRACLDNWFGNNHTTCPLCRSIL 113

[Close]

BLAST of CmaCh11G012960 vs. TAIR 10
Match: AT1G67856.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 2.8e-11
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 58  KLPVCRFEEL--HRGGRSEEDI--CSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRY 117
           ++ +  FE L  +RG R+E +   C VCL  F  E+ VS+L  C H FH  C++ W    
Sbjct: 63  RISITHFESLCENRGSRNEREAMDCCVCLCGFKEEEEVSELVSCKHYFHSACLDKWFGNN 122

Query: 118 HFTCPLCRSLL 125
           H TCPLCRS+L
Sbjct: 123 HTTCPLCRSIL 133

[Close]

BLAST of CmaCh11G012960 vs. TAIR 10
Match: AT2G04240.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 8.1e-11
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 58  KLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTC 117
           + P  RFE L R  +  ++ CSVCL++F  +  +++L +C H+FH  C+E W+  ++ TC
Sbjct: 83  RTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL-KCGHLFHKTCLEKWIDYWNITC 142

Query: 118 PLCRSLL 125
           PLCR+ L
Sbjct: 143 PLCRTPL 148

[Close]

BLAST of CmaCh11G012960 vs. TAIR 10
Match: AT2G04240.2 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 8.1e-11
Identity = 27/67 (40.30%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 58  KLPVCRFEELHRGGRSEEDICSVCLAEFTREDLVSQLHRCTHIFHYECIENWLHRYHFTC 117
           + P  RFE L R  +  ++ CSVCL++F  +  +++L +C H+FH  C+E W+  ++ TC
Sbjct: 83  RTPTLRFESLCRCKKQADNECSVCLSKFQGDSEINKL-KCGHLFHKTCLEKWIDYWNITC 142

Query: 118 PLCRSLL 125
           PLCR+ L
Sbjct: 143 PLCRTPL 148

The following BLAST results are available for this feature:

BLAST of CmaCh11G012960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL4	6.2e-16	37.31	RING-H2 finger protein ATL18 OS=Arabidopsis thaliana OX=3702 GN=ATL18 PE=2 SV=1	[more]
Q9SI09	1.1e-09	40.30	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=X...	[more]
Q9SUS5	1.5e-09	33.33	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana OX=3702 GN=RHA1B PE=2 ...	[more]
Q9SUS4	5.6e-09	42.19	Probable E3 ubiquitin-protein ligase RHA1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q9ZT50	5.6e-09	49.12	E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana OX=3702 GN=RHA2A PE=1 ...	[more]

BLAST of CmaCh11G012960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K513	5.8e-41	67.97	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G029960 P...	[more]
A0A7J8LWW2	2.6e-25	45.31	RING-type domain-containing protein OS=Gossypium lobatum OX=34289 GN=Golob_02695...	[more]
A0A0D2SLB9	3.4e-25	45.31	RING-type domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_005G...	[more]
A0A5D2M180	3.4e-25	45.31	RING-type domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_D0...	[more]
A0A1U8JQC4	3.4e-25	45.31	RING-H2 finger protein ATL18-like OS=Gossypium hirsutum OX=3635 GN=LOC107908195 ...	[more]

BLAST of CmaCh11G012960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589096.1	2.7e-40	88.42	AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7022803.1	1.3e-39	91.21	AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
MBA0556883.1	5.4e-25	45.31	hypothetical protein [Gossypium lobatum]	[more]
XP_012481249.1	7.1e-25	45.31	PREDICTED: RING-H2 finger protein ATL18-like [Gossypium raimondii] >XP_016690928...	[more]
MBA0682837.1	9.2e-25	45.31	hypothetical protein [Gossypium aridum]	[more]

BLAST of CmaCh11G012960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38140.1	4.4e-17	37.31	RING/U-box superfamily protein	[more]
AT1G24580.1	1.2e-11	32.11	RING/U-box superfamily protein	[more]
AT1G67856.1	2.8e-11	43.66	RING/U-box superfamily protein	[more]
AT2G04240.1	8.1e-11	40.30	RING/U-box superfamily protein	[more]
AT2G04240.2	8.1e-11	40.30	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 78..120 e-value: 1.4E-4 score: 31.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 77..121 e-value: 8.8E-11 score: 42.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 78..121 score: 12.607302
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 46..126 e-value: 1.1E-15 score: 59.1
None	No IPR available	PANTHER	PTHR45969	RING ZINC FINGER PROTEIN-RELATED	coord: 1..124
None	No IPR available	PANTHER	PTHR45969:SF9	ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN	coord: 1..124
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 73..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G012960.1	CmaCh11G012960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane