CmaCh11G012170 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G012170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	ATP synthase subunit alpha, chloroplastic
Location	Cma_Chr11: 7734489 .. 7734824 (+)
RNA-Seq Expression	CmaCh11G012170
Synteny	CmaCh11G012170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTATTCGTTTTGAACAACAAAAAGTGATTAATCAAGTACGACAACAGGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTGAATAGTTGTTTGAACGAGTTACATTTACGTACCATCAGTGCTAATATTGTCATTTCAAGCAAATGAAATTAGTAATATTATCCGTGAACGTATTGAGCAATATAATAGAGAAGTCAAAATTGTAAATACCGGTATTGTACTTCAAGTAGGCGACGACATTGCTAGTATTTATGGTCTTGATGAAGTAATGGCAGGTTCATTAGTCGAATTTGAAGAGGGTACTATAGGCATAGCTCTAAATTGA

mRNA sequence

ATGAAACTATTCGTTTTGAACAACAAAAATAATATTATCCGTGAACGTATTGAGCAATATAATAGAGAAGTCAAAATTGTAAATACCGGTATTGTACTTCAAGTAGGCGACGACATTGCTAGTATTTATGGTCTTGATGAAGTAATGGCAGGTTCATTAGTCGAATTTGAAGAGGGTACTATAGGCATAGCTCTAAATTGA

Coding sequence (CDS)

ATGAAACTATTCGTTTTGAACAACAAAAATAATATTATCCGTGAACGTATTGAGCAATATAATAGAGAAGTCAAAATTGTAAATACCGGTATTGTACTTCAAGTAGGCGACGACATTGCTAGTATTTATGGTCTTGATGAAGTAATGGCAGGTTCATTAGTCGAATTTGAAGAGGGTACTATAGGCATAGCTCTAAATTGA

Protein sequence

MKLFVLNNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN

Homology

[Close]

BLAST of CmaCh11G012170 vs. ExPASy Swiss-Prot
Match: A4QJA0 (ATP synthase subunit alpha, chloroplastic OS=Aethionema cordifolium OX=434059 GN=atpA PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.7e-21
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 10 NNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          +NIIRERIEQYNREVKIVNTG VLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 10 SNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. ExPASy Swiss-Prot
Match: A4QJI4 (ATP synthase subunit alpha, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=atpA PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.7e-21
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 10 NNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          +NIIRERIEQYNREVKIVNTG VLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 10 SNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. ExPASy Swiss-Prot
Match: Q49L13 (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=atpA PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.7e-21
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 10 NNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          +NIIRERIEQYNREVKIVNTG VLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 10 SNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. ExPASy Swiss-Prot
Match: B1NWD5 (ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta OX=3983 GN=atpA PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.7e-21
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 10 NNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          +NIIRERIEQYNREVKIVNTG VLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 10 SNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. ExPASy Swiss-Prot
Match: B0Z4N2 (ATP synthase subunit alpha, chloroplastic OS=Oenothera argillicola OX=3940 GN=atpA PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 5.7e-21
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 10 NNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          +NIIRERIEQYNREVKIVNTG VLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 10 SNIIRERIEQYNREVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. ExPASy TrEMBL
Match: A0A0S2IG79 (ATP synthase subunit alpha OS=Cucurbita moschata OX=3662 GN=atpA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. ExPASy TrEMBL
Match: A0A0S2IE22 (ATP synthase subunit alpha OS=Cucurbita argyrosperma OX=34294 GN=atpA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. ExPASy TrEMBL
Match: A0A0S2IHI4 (ATP synthase subunit alpha OS=Cucurbita pepo var. texana OX=37651 GN=atpA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. ExPASy TrEMBL
Match: A0A0S2IH79 (ATP synthase subunit alpha OS=Cucurbita pepo subsp. fraterna OX=37649 GN=atpA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. ExPASy TrEMBL
Match: A0A0S2IEP2 (ATP synthase subunit alpha OS=Cucurbita argyrosperma var. palmeri OX=1094860 GN=atpA PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. NCBI nr
Match: YP_009505065.1 (ATP synthase CF1 alpha subunit [Cucurbita pepo] >ALO21744.1 AtpA [Cucurbita argyrosperma] >ALO21775.1 AtpA [Cucurbita argyrosperma var. palmeri] >ALO21877.1 AtpA [Cucurbita argyrosperma subsp. sororia] >ALO22589.1 AtpA [Cucurbita pepo subsp. fraterna] >ALO22636.1 AtpA [Cucurbita pepo subsp. ovifera] >ALO22733.1 AtpA [Cucurbita pepo var. ozarkana] >ALO22734.1 AtpA [Cucurbita pepo subsp. pepo] >ALO22815.1 AtpA [Cucurbita pepo var. texana])

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. NCBI nr
Match: ALO21904.1 (AtpA [Cucurbita cordata] >ALO21987.1 AtpA [Cucurbita digitata])

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. NCBI nr
Match: ALO22114.1 (AtpA [Cucurbita ficifolia] >ALO22152.1 AtpA [Cucurbita foetidissima] >ALO22919.1 AtpA [Cucurbita pedatifolia] >QWV60825.1 ATP synthase CF1 alpha subunit [Cucurbita ficifolia] >QZL38756.1 ATP synthase CF1 alpha subunit [Cucurbita ficifolia])

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. NCBI nr
Match: YP_009447520.1 (ATP synthase CF1 alpha subunit [Cucurbita moschata] >ALO22375.1 AtpA [Cucurbita moschata] >ATY69952.1 ATP synthase CF1 alpha subunit [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-19
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 7  NNKNNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 66
          N  +NIIRERIEQYNREVKIVNTGIVLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 7  NEISNIIRERIEQYNREVKIVNTGIVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. NCBI nr
Match: KAF2300939.1 (hypothetical protein GH714_018446 [Hevea brasiliensis])

HSP 1 Score: 103.6 bits (257), Expect = 6.7e-19
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 10 NNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          +NIIRERIEQYNREVKIVNTG VLQVGDDIA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 10 SNIIRERIEQYNREVKIVNTGTVLQVGDDIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 98.6 bits (244), Expect = 2.0e-21
Identity = 51/57 (89.47%), Postives = 52/57 (91.23%), Query Frame = 0


Query: 10 NNIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          +NIIRERIEQYNREV IVNTG VLQVGD IA IYGLDEVMAG LVEFEEGTIGIALN
Sbjct: 10 SNIIRERIEQYNREVTIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTIGIALN 66

[Close]

BLAST of CmaCh11G012170 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 48.9 bits (115), Expect = 1.8e-06
Identity = 23/56 (41.07%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 11  NIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
           N+   RI  +    ++   G V+ VGD IA +YGL+E+ AG +V F  G  G+ALN
Sbjct: 282 NLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALN 337

[Close]

BLAST of CmaCh11G012170 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 48.9 bits (115), Expect = 1.8e-06
Identity = 23/56 (41.07%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 11 NIIRERIEQYNREVKIVNTGIVLQVGDDIASIYGLDEVMAGSLVEFEEGTIGIALN 67
          N+   RI  +    ++   G V+ VGD IA +YGL+E+ AG +V F  G  G+ALN
Sbjct: 12 NLFESRIRNFYANFQVDEIGRVVSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALN 67

The following BLAST results are available for this feature:

BLAST of CmaCh11G012170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QJA0	5.7e-21	91.23	ATP synthase subunit alpha, chloroplastic OS=Aethionema cordifolium OX=434059 GN...	[more]
A4QJI4	5.7e-21	91.23	ATP synthase subunit alpha, chloroplastic OS=Aethionema grandiflorum OX=72657 GN...	[more]
Q49L13	5.7e-21	91.23	ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus...	[more]
B1NWD5	5.7e-21	91.23	ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta OX=3983 GN=atpA P...	[more]
B0Z4N2	5.7e-21	91.23	ATP synthase subunit alpha, chloroplastic OS=Oenothera argillicola OX=3940 GN=at...	[more]

BLAST of CmaCh11G012170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0S2IG79	3.2e-19	90.00	ATP synthase subunit alpha OS=Cucurbita moschata OX=3662 GN=atpA PE=3 SV=1	[more]
A0A0S2IE22	3.2e-19	90.00	ATP synthase subunit alpha OS=Cucurbita argyrosperma OX=34294 GN=atpA PE=3 SV=1	[more]
A0A0S2IHI4	3.2e-19	90.00	ATP synthase subunit alpha OS=Cucurbita pepo var. texana OX=37651 GN=atpA PE=3 S...	[more]
A0A0S2IH79	3.2e-19	90.00	ATP synthase subunit alpha OS=Cucurbita pepo subsp. fraterna OX=37649 GN=atpA PE...	[more]
A0A0S2IEP2	3.2e-19	90.00	ATP synthase subunit alpha OS=Cucurbita argyrosperma var. palmeri OX=1094860 GN=...	[more]

BLAST of CmaCh11G012170 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009505065.1	6.7e-19	90.00	ATP synthase CF1 alpha subunit [Cucurbita pepo] >ALO21744.1 AtpA [Cucurbita argy...	[more]
ALO21904.1	6.7e-19	90.00	AtpA [Cucurbita cordata] >ALO21987.1 AtpA [Cucurbita digitata]	[more]
ALO22114.1	6.7e-19	90.00	AtpA [Cucurbita ficifolia] >ALO22152.1 AtpA [Cucurbita foetidissima] >ALO22919.1...	[more]
YP_009447520.1	6.7e-19	90.00	ATP synthase CF1 alpha subunit [Cucurbita moschata] >ALO22375.1 AtpA [Cucurbita ...	[more]
KAF2300939.1	6.7e-19	92.98	hypothetical protein GH714_018446 [Hevea brasiliensis]	[more]

BLAST of CmaCh11G012170 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00120.1	2.0e-21	89.47	ATP synthase subunit alpha	[more]
AT2G07698.1	1.8e-06	41.07	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	1.8e-06	41.07	ATP synthase subunit 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..23
None	No IPR available	COILS	Coil	Coil	coord: 66..66
None	No IPR available	PANTHER	PTHR48082:SF5	ATP SYNTHASE SUBUNIT ALPHA, CHLOROPLASTIC	coord: 11..66
None	No IPR available	PANTHER	PTHR48082	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	coord: 11..66
IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	PFAM	PF02874	ATP-synt_ab_N	coord: 29..66 e-value: 1.3E-6 score: 28.8
IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	GENE3D	2.40.30.20		coord: 7..66 e-value: 5.1E-18 score: 66.6
IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	SUPERFAMILY	50615	N-terminal domain of alpha and beta subunits of F1 ATP synthase	coord: 11..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G012170.1	CmaCh11G012170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0000932	P-body
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism