CmaCh11G012000 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G012000
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	translationally-controlled tumor protein homolog
Location	Cma_Chr11: 7133953 .. 7135340 (-)
RNA-Seq Expression	CmaCh11G012000
Synteny	CmaCh11G012000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTTCTCCGTGGCTATAAACATTCACCGCCCCTAGCGTTCTCCTTACGCTCTCTTTCTTTCTTCACCTTTTCCCCTCTACGTTTATTCTTCCATTCTCTCCCTCCTCCGATTTTGTTTGCAGCCATGATCGTCTACCAGGACCAACTTACAGGTATTTCCCCCTCTCCTTCAATTCCCCCTTGCATCCTTGTTTGTTTCTGTTTCGCTCTTACTGTTGCTCCCAATCTTGCTTCCCCAATAAATTTTATCCTTCTTTATGTATTGGATCATTCAATGCTGAAGTTTGGATTGGTTTGGAGCTTTTAGGTGTTCTGTTTTTGTGCTTGACTAGACTCCATTGATGAACTCAGGTGATGAACTTCTGTCAGACTCCTTCCCATACAAGGAGATTGAGAATGAGATGTTGTGGGAAGTGGAAGGAAAGGTAAGGAAACTGACATATTCTTCTAGTAATCTGCAAGTCTATTGATTCAACTAATAACGAATCATAGATGAAGATTTTTCGAGACTGACACGAGTTTAATCCCTGTGTTTTGTTTATTTGTCTGGAGTTTCTTATTCTGGGTAATTTGGGATTTGGATAACAGTGGATTGTACAAGGAGCAGTGGACGTAGACATCGGGGCGAACCCGTCTGCAGAAGGAGGTGAAGAAGATGAATGCGTGGAGGAAGAAGCTGTGAAGGTTGTGGATATTGTTGACACCTTCAGACTTCAGGTAAGAAAGAGTTGTGTTTTTCAATTCATTGGTATATATATAGTTTGGTTTTGGATGAATGGGTAAGAGAAAGTGTTGTGTGTGTGGGCATATATATTGGCAGGAACAACCTCCATTTGACAAGAAGCAGTTTATCACATACATGAAAAGATACATAAAGCTACTAACTCCCAAACTGGATGAAGAGAAACAAGAGGTGTTTAAGAAGCACATCCCAGAGGCAACCAAGTTCCTGCTGAGCAAGATCAATGACCTCCAATTGTAAGTTCAAGCTTTGTTTATTGTTAGGACACATCAAGAAGGTTGGTTATTAAGCTCAAATGGGTTTGAATTGAATGCAGCTTTGTGGGGGAAGGCATGCATGATGATGCCGCTCTGGTATTTGCATACTACAAAGAAGGGGCGACTGATCCTACATTTATCTATATTGCCTATGGGTTGAAGGAAGTCAAGTGCTGAAGGAATCCCATATTTTTCTGCTCGCAATACTTCTCTTTTTCTTTTTGATATTCTAAGCTAATTTACATCAACTTTATGCCCCCAATCCCAAAATACAATATACTATAATATAATATATGGCATGCATTATTTTATCATCTTTGTTTCGCTTTTGGGTGTATATTATTCGAATGACGAAGAATAGGCAAGTAAAATAACACGAAGAATAAG

mRNA sequence

TTCCTTCTCCGTGGCTATAAACATTCACCGCCCCTAGCGTTCTCCTTACGCTCTCTTTCTTTCTTCACCTTTTCCCCTCTACGTTTATTCTTCCATTCTCTCCCTCCTCCGATTTTGTTTGCAGCCATGATCGTCTACCAGGACCAACTTACAGGTGATGAACTTCTGTCAGACTCCTTCCCATACAAGGAGATTGAGAATGAGATGTTGTGGGAAGTGGAAGGAAAGTGGATTGTACAAGGAGCAGTGGACGTAGACATCGGGGCGAACCCGTCTGCAGAAGGAGGTGAAGAAGATGAATGCGTGGAGGAAGAAGCTGTGAAGGTTGTGGATATTGTTGACACCTTCAGACTTCAGGAACAACCTCCATTTGACAAGAAGCAGTTTATCACATACATGAAAAGATACATAAAGCTACTAACTCCCAAACTGGATGAAGAGAAACAAGAGGTGTTTAAGAAGCACATCCCAGAGGCAACCAAGTTCCTGCTGAGCAAGATCAATGACCTCCAATTCTTTGTGGGGGAAGGCATGCATGATGATGCCGCTCTGGTATTTGCATACTACAAAGAAGGGGCGACTGATCCTACATTTATCTATATTGCCTATGGGTTGAAGGAAGTCAAGTGCTGAAGGAATCCCATATTTTTCTGCTCGCAATACTTCTCTTTTTCTTTTTGATATTCTAAGCTAATTTACATCAACTTTATGCCCCCAATCCCAAAATACAATATACTATAATATAATATATGGCATGCATTATTTTATCATCTTTGTTTCGCTTTTGGGTGTATATTATTCGAATGACGAAGAATAGGCAAGTAAAATAACACGAAGAATAAG

Coding sequence (CDS)

ATGATCGTCTACCAGGACCAACTTACAGGTGATGAACTTCTGTCAGACTCCTTCCCATACAAGGAGATTGAGAATGAGATGTTGTGGGAAGTGGAAGGAAAGTGGATTGTACAAGGAGCAGTGGACGTAGACATCGGGGCGAACCCGTCTGCAGAAGGAGGTGAAGAAGATGAATGCGTGGAGGAAGAAGCTGTGAAGGTTGTGGATATTGTTGACACCTTCAGACTTCAGGAACAACCTCCATTTGACAAGAAGCAGTTTATCACATACATGAAAAGATACATAAAGCTACTAACTCCCAAACTGGATGAAGAGAAACAAGAGGTGTTTAAGAAGCACATCCCAGAGGCAACCAAGTTCCTGCTGAGCAAGATCAATGACCTCCAATTCTTTGTGGGGGAAGGCATGCATGATGATGCCGCTCTGGTATTTGCATACTACAAAGAAGGGGCGACTGATCCTACATTTATCTATATTGCCTATGGGTTGAAGGAAGTCAAGTGCTGA

Protein sequence

MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECVEEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKFLLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC

Homology

[Close]

BLAST of CmaCh11G012000 vs. ExPASy Swiss-Prot
Match: Q5J907 (Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera OX=51953 GN=TCTP PE=2 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.2e-78
Identity = 140/168 (83.33%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 1   MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECV 60
           M+VYQD LTGDELLSDSFPYKEI N MLWEVEGKW++QGAV+VDIGANPSAEGGEEDE V
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIHNGMLWEVEGKWVIQGAVNVDIGANPSAEGGEEDEGV 60

Query: 61  EEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKF 120
           +++AVKVVDIVDTFRLQEQP FDKKQF+T+MKRYIK LTPKLD EKQE+FKKHI  ATKF
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRYIKNLTPKLDAEKQELFKKHIEGATKF 120

Query: 121 LLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC 169
           LLSK++DLQFFVGE MHDD  LVFAYYK+GATDPTF+Y AYGLKE+KC
Sbjct: 121 LLSKLSDLQFFVGESMHDDGCLVFAYYKDGATDPTFLYFAYGLKEIKC 168

[Close]

BLAST of CmaCh11G012000 vs. ExPASy Swiss-Prot
Match: Q9ZSW9 (Translationally-controlled tumor protein homolog OS=Hevea brasiliensis OX=3981 GN=TCTP PE=2 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 6.4e-77
Identity = 139/168 (82.74%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECV 60
           M+VYQD LTGDELLSDSFPYKEI N +LWEVEGKW+VQGAVDVDIGANPSAEG +EDE V
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIHNGILWEVEGKWVVQGAVDVDIGANPSAEGADEDEGV 60

Query: 61  EEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKF 120
           +++AVKVVDIVDTFRLQEQP FDKKQF+TYMKR+IKLLTPKLDEEKQE FKK+I  ATKF
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLDEEKQESFKKNIEGATKF 120

Query: 121 LLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC 169
           LLSK++DLQFFVGE MHDD +LVFAYY+ GATDPTF+Y AY LKEVKC
Sbjct: 121 LLSKLSDLQFFVGESMHDDGSLVFAYYRGGATDPTFLYFAYALKEVKC 168

[Close]

BLAST of CmaCh11G012000 vs. ExPASy Swiss-Prot
Match: P43349 (Translationally-controlled tumor protein homolog OS=Solanum tuberosum OX=4113 GN=TCTP PE=2 SV=2)

HSP 1 Score: 280.8 bits (717), Expect = 1.0e-74
Identity = 134/168 (79.76%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 1   MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECV 60
           M+VYQD LTGDELLSDSFPYKEI+N MLWEV+GKW+VQGAVDV+IGANPSAEGG EDE V
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIQNGMLWEVQGKWVVQGAVDVNIGANPSAEGGGEDEGV 60

Query: 61  EEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKF 120
           +++AVKVVDIVDTFRLQEQP FDKKQF+TY+KRYIK LTPKL+ E QE FKK+I  ATKF
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPAFDKKQFVTYIKRYIKNLTPKLEGEAQEAFKKNIESATKF 120

Query: 121 LLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC 169
           LLSK+ D QFFVGEGMHDD+ALVFAYYK+G+ DPTF+Y+A GLKE+KC
Sbjct: 121 LLSKLKDFQFFVGEGMHDDSALVFAYYKDGSADPTFLYLAPGLKEIKC 168

[Close]

BLAST of CmaCh11G012000 vs. ExPASy Swiss-Prot
Match: P35681 (Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica OX=39947 GN=TCTP PE=1 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.9e-74
Identity = 132/168 (78.57%), Postives = 152/168 (90.48%), Query Frame = 0


Query: 1   MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECV 60
           M+VYQD LTGDELLSDSFPY+EIEN +LWEV+GKW+VQGA+DVDIGANPSAEGG +DE V
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDIGANPSAEGGGDDEGV 60

Query: 61  EEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKF 120
           +++AVKVVDIVDTFRLQEQPPFDKKQF+T+MKRYIK L+ KLD EKQE FKK+I  ATK+
Sbjct: 61  DDQAVKVVDIVDTFRLQEQPPFDKKQFVTFMKRYIKNLSAKLDAEKQEEFKKNIEGATKY 120

Query: 121 LLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC 169
           LL K+ DLQFFVGE MHDD  LVFAYYK+GATDPTF+Y ++GLKEVKC
Sbjct: 121 LLGKLKDLQFFVGESMHDDGGLVFAYYKDGATDPTFLYFSHGLKEVKC 168

[Close]

BLAST of CmaCh11G012000 vs. ExPASy Swiss-Prot
Match: Q944T2 (Translationally-controlled tumor protein homolog OS=Glycine max OX=3847 GN=TCTP PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 8.6e-74
Identity = 136/168 (80.95%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECV 60
           M+VYQD LTGDELLSDSF YKEIEN MLWEVEGKW+V+GAVDVDIGANPSAEGG EDE V
Sbjct: 1   MLVYQDLLTGDELLSDSFRYKEIENGMLWEVEGKWVVKGAVDVDIGANPSAEGGGEDEGV 60

Query: 61  EEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKF 120
           ++ AVKVVDIVDTFRLQEQP FDKKQF+T+MKR+IK LTPKLD E+QE+FKKHI  ATK+
Sbjct: 61  DDAAVKVVDIVDTFRLQEQPAFDKKQFVTFMKRFIKNLTPKLDAEQQELFKKHIEGATKY 120

Query: 121 LLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC 169
           LLSKI D QFFVGE M DDA LVFAYYK+GA DPTF+Y AY LKEVKC
Sbjct: 121 LLSKIKDFQFFVGESMGDDACLVFAYYKDGAADPTFLYFAYALKEVKC 168

[Close]

BLAST of CmaCh11G012000 vs. TAIR 10
Match: AT3G05540.1 (Methionine sulfoxide reductase (MSS4-like) family protein )

HSP 1 Score: 266.5 bits (680), Expect = 1.4e-71
Identity = 128/169 (75.74%), Postives = 149/169 (88.17%), Query Frame = 0


Query: 1   MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECV 60
           M+VYQD LTGDELLSDSFPYKEIEN MLWEVEGKW+V+GA+D DIGANP  EGG EDE V
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGKWVVKGAMDFDIGANPGEEGG-EDEGV 60

Query: 61  EEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKF 120
           +++AVKVVDI+DTFRLQEQP FDKKQF+ +MKRYIK L+PKLD E QE+FKKHI  ATKF
Sbjct: 61  DDQAVKVVDIIDTFRLQEQPSFDKKQFVMFMKRYIKQLSPKLDSENQELFKKHIESATKF 120

Query: 121 LLSKINDLQFFVGEGMH-DDAALVFAYYKEGATDPTFIYIAYGLKEVKC 169
           L+SK+ D QFFVGE M  ++ +LVFAYY+EGATDPTF+Y+AYGLKE+KC
Sbjct: 121 LMSKLKDFQFFVGESMEGEEGSLVFAYYREGATDPTFLYLAYGLKEIKC 168

[Close]

BLAST of CmaCh11G012000 vs. TAIR 10
Match: AT3G16640.1 (translationally controlled tumor protein )

HSP 1 Score: 263.5 bits (672), Expect = 1.2e-70
Identity = 128/168 (76.19%), Postives = 145/168 (86.31%), Query Frame = 0


Query: 1   MIVYQDQLTGDELLSDSFPYKEIENEMLWEVEGKWIVQGAVDVDIGANPSAEGGEEDECV 60
           M+VYQD LTGDELLSDSFPYKEIEN +LWEVEGKW+  GAVDV+IGANPSAE G EDE V
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGV 60

Query: 61  EEEAVKVVDIVDTFRLQEQPPFDKKQFITYMKRYIKLLTPKLDEEKQEVFKKHIPEATKF 120
           ++   KVVDIVDTFRLQEQP +DKK FI Y+K+YIKLLTPKL EE Q VFKK I  ATKF
Sbjct: 61  DDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKF 120

Query: 121 LLSKINDLQFFVGEGMHDDAALVFAYYKEGATDPTFIYIAYGLKEVKC 169
           LL +++D QFFVGEGMHDD+ LVFAYYKEG+T+PTF+Y A+GLKEVKC
Sbjct: 121 LLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168

The following BLAST results are available for this feature:

BLAST of CmaCh11G012000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5J907	1.2e-78	83.33	Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tener...	[more]
Q9ZSW9	6.4e-77	82.74	Translationally-controlled tumor protein homolog OS=Hevea brasiliensis OX=3981 G...	[more]
P43349	1.0e-74	79.76	Translationally-controlled tumor protein homolog OS=Solanum tuberosum OX=4113 GN...	[more]
P35681	3.9e-74	78.57	Translationally-controlled tumor protein homolog OS=Oryza sativa subsp. japonica...	[more]
Q944T2	8.6e-74	80.95	Translationally-controlled tumor protein homolog OS=Glycine max OX=3847 GN=TCTP ...	[more]

BLAST of CmaCh11G012000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05540.1	1.4e-71	75.74	Methionine sulfoxide reductase (MSS4-like) family protein	[more]
AT3G16640.1	1.2e-70	76.19	translationally controlled tumor protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018105	Translationally controlled tumour protein	PRINTS	PR01653	TCTPROTEIN	coord: 46..57 score: 70.54 coord: 1..21 score: 62.76 coord: 60..79 score: 56.79
IPR018105	Translationally controlled tumour protein	PFAM	PF00838	TCTP	coord: 1..164 e-value: 2.2E-57 score: 194.0
IPR018105	Translationally controlled tumour protein	PANTHER	PTHR11991	TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED	coord: 1..168
IPR011323	Mss4/translationally controlled tumour-associated TCTP	GENE3D	2.170.150.10	Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A	coord: 1..168 e-value: 1.0E-57 score: 197.1
None	No IPR available	PANTHER	PTHR11991:SF11	TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN HOMOLOG	coord: 1..168
IPR018103	Translationally controlled tumour protein, conserved site	PROSITE	PS01002	TCTP_1	coord: 45..55
IPR018103	Translationally controlled tumour protein, conserved site	PROSITE	PS01003	TCTP_2	coord: 125..147
IPR034737	Translationally controlled tumour protein (TCTP) domain	PROSITE	PS51797	TCTP_3	coord: 1..168 score: 59.07663
IPR011057	Mss4-like superfamily	SUPERFAMILY	51316	Mss4-like	coord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G012000.1	CmaCh11G012000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0005509	calcium ion binding