CmaCh11G011890 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G011890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Reverse transcriptase
Location	Cma_Chr11: 7008386 .. 7011786 (+)
RNA-Seq Expression	CmaCh11G011890
Synteny	CmaCh11G011890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGATCAATATGATCAGGACTTCATGAGATTGAGAAGGTTTGCACCGTCATTAGCTGACACTGAAGAGAAACAGACAAAAAAATTTGTGTTGGGATTGAACCCGAAGACCCGCCGCATGTTAGAGGCCTTTAACCCAAAAACCTATGAAGAGGCCCTAAGGACGGCCAAGGCCCTAGAGGAACCCCCAAAGGAAAAGAAAACGAAGTCATTGGTTGTCACAAGGAGGAAAAGCCCTATCAAGGTCGAAACCACAGAATTCCAACCACCACTCCAAAGACCTCGATATCAAAGTAGGCCACCTGCTCGACCCCCATTGGCCCGATACCTAACATTAGAGAAGCCCCTGTGCCGTGACTGTGGAAAACAACATGTTGGGAGATGTTTGGCGGGCTCAGGTATGTGTTATATCTGTGGTCATGCAGGTCATGTGGCCAGAACTTGCCCTACAAGGAGCTCGGGAAATCCAAGGGAACCCCTTAGAGGACCGGTCATCCGAGAGCCCACCATACAAACCCGCCCACAGACCAGGGCATATGCAACAACTAGTAAAAAGGCGGAACATCTGGCATCGTGGTGACAAGTATGCTTTCTATAGTAGGACACTTTGCGTTGACATTGTTTGACTCTGGTTCTACCCATTCCTTTGTTGCTTTACCATTTGTTAAACAAGCAGGGTTTGTAGTAGAACCCTTAATGCATGTGTTGTCGGTCGGTACCCCAGCAGGGGTAGACTTAGTTACGAAAAATAGAATAAAGGACGGACAAGTGGTAATAGCGGGACAAACCATCCACGTAGACTTAAAGGTAGTAGGTATGACTGATTTTGACGTCATACTAGGAATGGACTGACTAGCCGAAAACTTTGCTAGCATAGACTGCCATATGAAAGAGGTGATATTCACACCTCCCAACAGACTTACCTTTAAGTTTAAAGGAACCTCCACAGGTACCACCCCAAAAATAATATCGATGATGAAAGCGAGACGCTTGATACAACAAGGGGGGTGGGTGTTTCCAACCTGTGCAGTAAACACAAAAGAAAAGAAAAACCCATAGATACAGTACCCATAGTAAACGAATTTATGGATGTCTTCCCAGAGGACCTCCCGGGAATTCCTCCATCACGAGAGGTAGACTTTGGAATAGATCTGGAACCAGGAACGGGGCCCATCTCTAAGGCCCCGTACCGCATGGCACTAGCAGAACTAAAAGAACTTAAATCACAACTGCAAGACCTGTTAGATAAGGGCTTCATTCGACCTAGCATGTCCCCTTGGGGTGCACCAGTGTTGTTTGTCAAAAAGAAAGACGACTCAATGCGTTTATGCATTGATTATAGGGAATTAAACAAGAGGACGGTAAAGAACAAATACCCGTTACCCCGTATTGAGGACCTATTTGACCAACTACGTGGGGCGGCAGTGTTTTCTAAAATAGATCTTCGATCAGGATATCATCAAATTAAGATTAAAAATGAAGACGTACCGAAAACAGCCTTTCGTAACCAGATATGGCCACTACAAGTTTGTGGTGATGTATTTTGGTCTCACCAATACCCCAACGGTATTTATGGAATTAATGAACTGAGTATTTAAAGAGTGCTTAGACTCGTTTGCGATCGTGTTCATAGATGATATCCTGATATACTCGAAAACGGACCTAGAACACTAAGAACACCTTCGCAAAGCCTTAACTATCCTAAGGGAGAACAAGTTGTATGCTAAATTCTCCAAGTGCGAATTTTGGCTACGACAGGTTTCGTTTCTAGGGCACGTAGTGTCTAAAGACGGAATCTTCGTAGATCCCAATAAGATAGAAGCGGTCACGAAATGGAAGCGCCCAACAATGGTCACCGAGATACGAAGTTTCTTGGGATTGGTAGGCTACTATCGAAGGTTTGTCTAGGACTTCGCTAGAATAGCCACGCCTCTCACCCAATTGACAAAAAAAGGTGTACCTTTTGTTTGGGACGATACTTATGAGGCCAGCTTTCAAGAGCTAAAACAAAGACTAGTATCCGCCTCAGTGCTCACAGTGCCAAAGAACTGTCTAAAATATATTTAATTAGCTGGAATATATCTAAGTAATGAGTATACCCAACTGTCTAAAATACTTAGTGGAAGGAAAAAGATATATGAGATACATTGTTTTCTTTTACGCTCTCTGAAAAATTCACACCGTGAGATTCATGTTCGGCCTCGTGTCGCCCTGGAAGTGGCCTCCATTCAGAAGGTATTTGCATGAGTCAATAACAAGGTGAATAGAGAAAGTATTTATAGTAAGTGGGAGAAGGAAGTATATCAACACCTCCTATGATCTCCACCATTAGGTTGCACCGTGAGATTCCCATGTCCTCCTGCATGTTGCCCTAGAGCAACTACCCATTCTGAGGGTCATAACATGGGAGTCGAAACAACGCAAACTCCAGAAATGGATAGGATTTCTTAGGTTCATTCCCAACTTTGGCTTATTCATTCGATAGCATTGTTGGGGGCCGATCTCTGAGGTCTGAAAATGGCGGGTCAGTAAGAATTACTAAGAGTTAGTGAGAATGTTTGTTTAATCCACCACACCTAAATGGTGTGAAAGTTATCTTATTTATAATCAAATAAATTACAAGAATATGGAAAAAGTAATAAATGGAAAGATACCTAGAAGGCAAATATCTAGATATTTGTCTTATAATAAAATATCAAAATATGATATATACGATAAACTATAATTTAGTATTAAATATCCTTAAATCCCCACCGCAAGCTGAGCGTCGGATTTGAACGAACGTGAAGCTTGGATTTGAAAAATTCAAAGAGAGGTTGAGAAACACTTTTCATGAAGATGTCAACAACCTGGTTCGGAGAAGGCGTAGAGAAACACTTTCTTGGCTATCGAAAACTGCATAGGCTCTGGTGAGAATTGTCGCTCAGTGGCGATACTGCCTTGGCTTCGGCGAGAATATGTTTAACCCATGAAGAGGGATCGTCGCTTACCGACGATGCTGCCTTGGCTCTGGTGAGAATATGTCAACCCAAGAAGTAGAAGGGGAAACCTAGAGCAAGGGACAAAAACAATGTTGAAGCCGGAAGAGTAGCCACAGTGGGCCAAGGAGCCAATTTTGGCTAGAAGGGGGGCGGTGACTTTGTTGGCGAAGAAGCCAGTGCGGCACCCAGATTTCAAAGGTAAATCTTTGCATAATGTTGATAGGTTTAGGTTAGGGTTTCTGTGAAGGATGAAGGGAAGATTGGGAAGAAAATGAGAGAGGTTATGTTTGCGAAGGGAGAATCAATTGTGTTGGAGAAGGTGAGGTTGTATGTACAGAGTATGGCGAAAGGTGATGTGGAGGTCAAAAGGGTGGAGCCGAAGACTAATCAATCGGCTCTGCATGTGGTAGCCATGTAG

mRNA sequence

ATGGTGGATCAATATGATCAGGACTTCATGAGATTGAGAAGGTTTGCACCGTCATTAGCTGACACTGAAGAGAAACAGACAAAAAAATTTGTGTTGGGATTGAACCCGAAGACCCGCCGCATGTTAGAGGCCTTTAACCCAAAAACCTATGAAGAGGCCCTAAGGACGGCCAAGGCCCTAGAGGAACCCCCAAAGGAAAAGAAAACGAAGTCATTGGTTGTCACAAGGAGGAAAAGCCCTATCAAGGTCGAAACCACAGAATTCCAACCACCACTCCAAAGACCTCGATATCAAAGTAGGCCACCTGCTCGACCCCCATTGGCCCGATACCTAACATTAGAGAAGCCCCTGTGCCGTGACTGTGGAAAACAACATGTTGGGAGATGTTTGGCGGGCTCAGAGGACCTCCCGGGAATTCCTCCATCACGAGAGGTAGACTTTGGAATAGATCTGGAACCAGGAACGGGGCCCATCTCTAAGGCCCCGTACCGCATGGCACTAGCAGAACTAAAAGAACTTAAATCACAACTGCAAGACCTGTTAGATAAGGGCTTCATTCGACCTAGCATGTCCCCTTGGGGTGCACCAGTGTTGTTTGTCAAAAAGAAAGACGACTCAATGCGTTTATGCATTGATTATAGGGAATTAAACAAGAGGACGGTAAAGAACAAATACCCGTTACCCCGTATTGAGGACCTATTTGACCAACTACGTGGGGCGGCAGTGTTTTCTAAAATAGATCTTCGATCAGGATATCATCAAATTAAGATTAAAAATGAAGACGTACCGAAAACAGCCTTTCGTAACCAGATATGGCCACTACAAGTTTGTGGTGATGTATTTTGGTCTCACCAATACCCCAACGGGCACGTAGTGTCTAAAGACGGAATCTTCGTAGATCCCAATAAGATAGAAGCGGTCACGAAATGGAAGCGCCCAACAATGGTCACCGAGATACGAAGTTTCTTGGGATTGGTAGGCTACTATCGAAGTGGCGATACTGCCTTGGCTTCGGCGAGAATATGTTTAACCCATGAAGAGGGATCGTCGCTTACCGACGATGCTGCCTTGGCTCTGGTTAGGGTTTCTGTGAAGGATGAAGGGAAGATTGGGAAGAAAATGAGAGAGGTTATGTTTGCGAAGGGAGAATCAATTGTGTTGGAGAAGGTGAGGTTGTATGTACAGAGTATGGCGAAAGGTGATGTGGAGGTCAAAAGGGTGGAGCCGAAGACTAATCAATCGGCTCTGCATGTGGTAGCCATGTAG

Coding sequence (CDS)

ATGGTGGATCAATATGATCAGGACTTCATGAGATTGAGAAGGTTTGCACCGTCATTAGCTGACACTGAAGAGAAACAGACAAAAAAATTTGTGTTGGGATTGAACCCGAAGACCCGCCGCATGTTAGAGGCCTTTAACCCAAAAACCTATGAAGAGGCCCTAAGGACGGCCAAGGCCCTAGAGGAACCCCCAAAGGAAAAGAAAACGAAGTCATTGGTTGTCACAAGGAGGAAAAGCCCTATCAAGGTCGAAACCACAGAATTCCAACCACCACTCCAAAGACCTCGATATCAAAGTAGGCCACCTGCTCGACCCCCATTGGCCCGATACCTAACATTAGAGAAGCCCCTGTGCCGTGACTGTGGAAAACAACATGTTGGGAGATGTTTGGCGGGCTCAGAGGACCTCCCGGGAATTCCTCCATCACGAGAGGTAGACTTTGGAATAGATCTGGAACCAGGAACGGGGCCCATCTCTAAGGCCCCGTACCGCATGGCACTAGCAGAACTAAAAGAACTTAAATCACAACTGCAAGACCTGTTAGATAAGGGCTTCATTCGACCTAGCATGTCCCCTTGGGGTGCACCAGTGTTGTTTGTCAAAAAGAAAGACGACTCAATGCGTTTATGCATTGATTATAGGGAATTAAACAAGAGGACGGTAAAGAACAAATACCCGTTACCCCGTATTGAGGACCTATTTGACCAACTACGTGGGGCGGCAGTGTTTTCTAAAATAGATCTTCGATCAGGATATCATCAAATTAAGATTAAAAATGAAGACGTACCGAAAACAGCCTTTCGTAACCAGATATGGCCACTACAAGTTTGTGGTGATGTATTTTGGTCTCACCAATACCCCAACGGGCACGTAGTGTCTAAAGACGGAATCTTCGTAGATCCCAATAAGATAGAAGCGGTCACGAAATGGAAGCGCCCAACAATGGTCACCGAGATACGAAGTTTCTTGGGATTGGTAGGCTACTATCGAAGTGGCGATACTGCCTTGGCTTCGGCGAGAATATGTTTAACCCATGAAGAGGGATCGTCGCTTACCGACGATGCTGCCTTGGCTCTGGTTAGGGTTTCTGTGAAGGATGAAGGGAAGATTGGGAAGAAAATGAGAGAGGTTATGTTTGCGAAGGGAGAATCAATTGTGTTGGAGAAGGTGAGGTTGTATGTACAGAGTATGGCGAAAGGTGATGTGGAGGTCAAAAGGGTGGAGCCGAAGACTAATCAATCGGCTCTGCATGTGGTAGCCATGTAG

Protein sequence

MVDQYDQDFMRLRRFAPSLADTEEKQTKKFVLGLNPKTRRMLEAFNPKTYEEALRTAKALEEPPKEKKTKSLVVTRRKSPIKVETTEFQPPLQRPRYQSRPPARPPLARYLTLEKPLCRDCGKQHVGRCLAGSEDLPGIPPSREVDFGIDLEPGTGPISKAPYRMALAELKELKSQLQDLLDKGFIRPSMSPWGAPVLFVKKKDDSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLRGAAVFSKIDLRSGYHQIKIKNEDVPKTAFRNQIWPLQVCGDVFWSHQYPNGHVVSKDGIFVDPNKIEAVTKWKRPTMVTEIRSFLGLVGYYRSGDTALASARICLTHEEGSSLTDDAALALVRVSVKDEGKIGKKMREVMFAKGESIVLEKVRLYVQSMAKGDVEVKRVEPKTNQSALHVVAM

Homology

[Close]

BLAST of CmaCh11G011890 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-24
Identity = 57/133 (42.86%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 135 DLPGIPPSREVDFGIDLEPGTGPISKAPYRMALAELKELKSQLQDLLDKGFIRPSMSPWG 194
           D+  IP    V   I+++PG       PY +     +E+   +Q LLD  FI PS SP  
Sbjct: 578 DINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCS 637

Query: 195 APVLFVKKKDDSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLRGAAVFSKIDLRSGYHQ 254
           +PV+ V KKD + RLC+DYR LNK T+ + +PLPRI++L  ++  A +F+ +DL SGYHQ
Sbjct: 638 SPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQ 697

Query: 255 IKIKNEDVPKTAF 268
           I ++ +D  KTAF
Sbjct: 698 IPMEPKDRYKTAF 706

[Close]

BLAST of CmaCh11G011890 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-24
Identity = 57/133 (42.86%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 135 DLPGIPPSREVDFGIDLEPGTGPISKAPYRMALAELKELKSQLQDLLDKGFIRPSMSPWG 194
           D+  IP    V   I+++PG       PY +     +E+   +Q LLD  FI PS SP  
Sbjct: 604 DINNIP----VKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCS 663

Query: 195 APVLFVKKKDDSMRLCIDYRELNKRTVKNKYPLPRIEDLFDQLRGAAVFSKIDLRSGYHQ 254
           +PV+ V KKD + RLC+DYR LNK T+ + +PLPRI++L  ++  A +F+ +DL SGYHQ
Sbjct: 664 SPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQ 723

Query: 255 IKIKNEDVPKTAF 268
           I ++ +D  KTAF
Sbjct: 724 IPMEPKDRYKTAF 732

[Close]

BLAST of CmaCh11G011890 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.1e-24
Identity = 76/241 (31.54%), Postives = 112/241 (46.47%), Query Frame = 0


Query: 163 YRMALAELKELKSQLQDLLDKGFIRPSMSPWGAPVLFVKKKDDS-----MRLCIDYRELN 222
           Y    A  +E++SQ+QD+L++G IR S SP+ +P+  V KK D+      R+ IDYR+LN
Sbjct: 213 YSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLN 272

Query: 223 KRTVKNKYPLPRIEDLFDQLRGAAVFSKIDLRSGYHQIKIKNEDVPKTAFRNQ------- 282
           + TV +++P+P ++++  +L     F+ IDL  G+HQI++  E V KTAF  +       
Sbjct: 273 EITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYL 332

Query: 283 --------------------IWP-----------------------LQVCGDVFWSHQYP 331
                               + P                       LQ  G VF      
Sbjct: 333 RMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKA 392

[Close]

BLAST of CmaCh11G011890 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 4.6e-23
Identity = 73/247 (29.55%), Postives = 111/247 (44.94%), Query Frame = 0


Query: 157 PISKAPYRMALAELKELKSQLQDLLDKGFIRPSMSPWGAPVLFVKKKDDS-----MRLCI 216
           PI    Y +A     E+++Q+Q++L++G IR S SP+ +P   V KK D+      R+ I
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265

Query: 217 DYRELNKRTVKNKYPLPRIEDLFDQLRGAAVFSKIDLRSGYHQIKIKNEDVPKTAF---- 276
           DYR+LN+ T+ ++YP+P ++++  +L     F+ IDL  G+HQI++  E + KTAF    
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325

Query: 277 ------------RNQIWPLQVCGD----------------------------------VF 331
                       RN     Q C +                                  VF
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385

[Close]

BLAST of CmaCh11G011890 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.5e-21
Identity = 65/247 (26.32%), Postives = 102/247 (41.30%), Query Frame = 0


Query: 157 PISKAPYRMALAELKELKSQLQDLLDKGFIRPSMSPWGAPVLFVKKK-----DDSMRLCI 216
           PI    Y   +    E++ Q+ +LL  G IRPS SP+ +P+  V KK     +   R+ +
Sbjct: 123 PIYAKSYPYPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVV 182

Query: 217 DYRELNKRTVKNKYPLPRIEDLFDQLRGAAVFSKIDLRSGYHQIKIKNEDVPKTAFR--- 276
           D++ LN  T+ + YP+P I      L  A  F+ +DL SG+HQI +K  D+PKTAF    
Sbjct: 183 DFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLN 242

Query: 277 -------------------------------NQIWPLQVCGDVFWSHQYPN--------- 331
                                           ++  + +   + +S  Y           
Sbjct: 243 GKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVL 302

[Close]

BLAST of CmaCh11G011890 vs. TAIR 10
Match: AT3G12050.1 (Aha1 domain-containing protein )

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-08
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 360 VRVSVKDEGKIGKKMREVMFAKGESIVLEKVRLYVQSMAKG-----DVEVKRVEPKTNQS 419
           +R SVKDEG IG+ ++E M  KG+ I+LEKVR+YV++MA+G     ++E K+V PK+  +
Sbjct: 126 IRFSVKDEGPIGRTLKEAMVKKGKEIILEKVRVYVEAMARGGPCRDELESKKVAPKSVAA 185

Query: 420 ALHVVAM 422
               VA+
Sbjct: 186 GSATVAV 192

[Close]

BLAST of CmaCh11G011890 vs. TAIR 10
Match: AT3G12050.2 (Aha1 domain-containing protein )

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-08
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 0


Query: 360 VRVSVKDEGKIGKKMREVMFAKGESIVLEKVRLYVQSMAKG-----DVEVKRVEPKTNQS 419
           +R SVKDEG IG+ ++E M  KG+ I+LEKVR+YV++MA+G     ++E K+V PK+  +
Sbjct: 87  IRFSVKDEGPIGRTLKEAMVKKGKEIILEKVRVYVEAMARGGPCRDELESKKVAPKSVAA 146

Query: 420 ALHVVAM 422
               VA+
Sbjct: 147 GSATVAV 153

[Close]

BLAST of CmaCh11G011890 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-07
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 290 HVVSKDGIFVDPNKIEAVTKWKRPTMVTEIRSFLGLVGYYR 331
           H++S +G+  DP K+EA+  W  P   TE+R FLGL GYYR
Sbjct: 37  HIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYR 77

The following BLAST results are available for this feature:

BLAST of CmaCh11G011890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.1e-24	42.86	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.1e-24	42.86	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P04323	4.1e-24	31.54	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	4.6e-23	29.55	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	2.5e-21	26.32	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of CmaCh11G011890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12050.1	1.1e-08	46.27	Aha1 domain-containing protein	[more]
AT3G12050.2	1.1e-08	46.27	Aha1 domain-containing protein	[more]
ATMG00860.1	1.6e-07	51.22	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 163..183
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 146..269 e-value: 3.6E-50 score: 172.2
None	No IPR available	PANTHER	PTHR24559:SF363	SUBFAMILY NOT NAMED	coord: 289..330
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 157..268
None	No IPR available	PANTHER	PTHR24559:SF363	SUBFAMILY NOT NAMED	coord: 157..268
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 289..330
None	No IPR available	CDD	cd01647	RT_LTR	coord: 184..268 e-value: 2.38918E-43 score: 147.742
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 200..268 e-value: 1.2E-7 score: 31.4
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 225..252 e-value: 3.6E-50 score: 172.2
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 302..341 e-value: 1.3E-7 score: 33.5
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 135..331

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G011890.1	CmaCh11G011890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0019538	protein metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008270	zinc ion binding