CmaCh11G011880 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G011880
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cma_Chr11: 6987468 .. 6988750 (-)
RNA-Seq Expression	CmaCh11G011880
Synteny	CmaCh11G011880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGTGTTCATGGAGATCAGATGCATTTTCTAATTTGGAAACATGGATTCCATGCTGAAGTTTTTGTTGCCAGTGCATTGGTCGATATGTATGCGAAATGTTGTGATATGTGCACTGCTGAGAAGGTGTTTGAGGAAATGCCTGTGGGAAACCTTGTGTCTTTGAACTCTATGATTGTGGGGTTCTTGCAGAACAAAGTTTATGATCGGGCCATTTTCTCTAACTGTTCTTGATGAGGTAAGCTTTTCCAGTGCTTTAAGGTAAGCTTTTCCAGTGCTTTAGTGCTTATCACCATGTTGGTAACTTGGAGTTTGGGAAACAAGTTCATGGGTTTCTCTGAAGCTTGGTGTCGAGAATTTGGTTCATGTTAATAACTCGCTGTTTGACATGTATGGTAAATGTGGCTTGTTTTATGATGATGTGAAGTTGTTCTCAAATATTGGCGTTTAGAGATGTTGTTGCTAGGAATATAATGATCATGGAATGAGTTTATAGCGACAATTATAAAGGTGCCTACAATAGTTTTTGGATGATGAGGAGGAAAGGTTTAATACCTGATGATGCATCATACTCTTCTGCGCTTCATTCTTAAGAAAATCTTGCCATTATATCAGGGAACGCTTATCCATTATCTGATCATACAATCTGGGTTTTTGAACATGTTGTGTGTTACAAGTTCTTTGGGCACAATGTATGCAAAATGCAGCAGCTTGGCAGATGTTTTTTTTTGGAGATTTGAAGAAACTAAGGACGATAATGTGTTTTGTTGGACAGCCATAATTGCAACTTGTCAACAGCACGGCCATACTAACCAGGTTGTTGAATTGTTGAAAGAAATGTTGAGAGAGGAGATTACACCTGACTACATTACTTTTATTTCTGTTCTCTCTGCTTGTAGCCACACAGGTCGGGTGAAGAAGGATTCTTCTACTTTAATTCAATGGTTGAAGTGCATGGTAGTAACCCTGGATATGAACATTATGCGTGCATAGTTGACTTGCTTGGCCGTGCTGAGCAGATGAATAGAGCTAAGAGGTTTATAGAAGTGATGCCTATCAAACCAGAGGCAGAGTTGCTTGATCTTTATTATGTTGCATATGAGGTTAGCAACTTTAGTTATATCTTTCACATTTCTTAAATCCTGAATTGCACGGTATCTTGCCTTTTTCATGTTGTGCCAAAGGCCATTGCTTTTGTTGTCTGTAAAATGAAGTTCCCTTGTAGTCGTACTAAATTGAGCAGCCTGATGTGGAAATAAGGCAAGAACATTTCTTCCTTT

mRNA sequence

ATGGCTTGTGTTCATGGAGATCAGATGCATTTTCTAATTTGGAAACATGGATTCCATGCTGAAGTTTTTGTTGCCAGTGCATTGGTCGATATAACAAAGTTTATGATCGGGCCATTTTCTCTAACTGTTCTTGATGAGGTAAGCTTTTCCAGTGCTTTAAGTTCTTTGGGCACAATGTATGCAAAATGCAGCAGCTTGGCAGATGTTTTTTTTTGGAGATTTGAAGAAACTAAGGACGATAATGTGTTTTGTTGGACAGCCATAATTGCAACTTGTCAACAGCACGGCCATACTAACCAGCCACACAGGTCGGGTGAAGAAGGATTCTTCTACTTTAATTCAATGGTTGAAGTGCATGGTAGTAACCCTGGATATGAACATTATGCGTGCATAGTTGACTTGCTTGGCCGTGCTGAGCAGATGAATAGAGCTAAGAGGTTTATAGAAGTGATGCCTATCAAACCAGAGGCAGAGTTGCTTGATCTTTATTATGTTGCATATGAGGTTAGCAACTTTAGTTATATCTTTCACATTTCTTAAATCCTGAATTGCACGGTATCTTGCCTTTTTCATGTTGTGCCAAAGGCCATTGCTTTTGTTGTCTGTAAAATGAAGTTCCCTTGTAGTCGTACTAAATTGAGCAGCCTGATGTGGAAATAAGGCAAGAACATTTCTTCCTTT

Coding sequence (CDS)

ATGGCTTGTGTTCATGGAGATCAGATGCATTTTCTAATTTGGAAACATGGATTCCATGCTGAAGTTTTTGTTGCCAGTGCATTGGTCGATATAACAAAGTTTATGATCGGGCCATTTTCTCTAACTGTTCTTGATGAGGTAAGCTTTTCCAGTGCTTTAAGTTCTTTGGGCACAATGTATGCAAAATGCAGCAGCTTGGCAGATGTTTTTTTTTGGAGATTTGAAGAAACTAAGGACGATAATGTGTTTTGTTGGACAGCCATAATTGCAACTTGTCAACAGCACGGCCATACTAACCAGCCACACAGGTCGGGTGAAGAAGGATTCTTCTACTTTAATTCAATGGTTGAAGTGCATGGTAGTAACCCTGGATATGAACATTATGCGTGCATAGTTGACTTGCTTGGCCGTGCTGAGCAGATGAATAGAGCTAAGAGGTTTATAGAAGTGATGCCTATCAAACCAGAGGCAGAGTTGCTTGATCTTTATTATGTTGCATATGAGGTTAGCAACTTTAGTTATATCTTTCACATTTCTTAA

Protein sequence

MACVHGDQMHFLIWKHGFHAEVFVASALVDITKFMIGPFSLTVLDEVSFSSALSSLGTMYAKCSSLADVFFWRFEETKDDNVFCWTAIIATCQQHGHTNQPHRSGEEGFFYFNSMVEVHGSNPGYEHYACIVDLLGRAEQMNRAKRFIEVMPIKPEAELLDLYYVAYEVSNFSYIFHIS

Homology

[Close]

BLAST of CmaCh11G011880 vs. ExPASy Swiss-Prot
Match: Q9SVP7 (Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H42 PE=2 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-13
Identity = 56/180 (31.11%), Postives = 80/180 (44.44%), Query Frame = 0


Query: 6   GDQMHFLIWKHGFHAEVFVASALVDITKFMIGPFSLTVLDEVSFSSALSSLGTMYAKCSS 65
           G Q+H +I K G+ +E  V +AL+                            +MYAKC S
Sbjct: 711 GKQVHAVITKTGYDSETEVCNALI----------------------------SMYAKCGS 770

Query: 66  LADVFFWRFEETKDDNVFCWTAIIATCQQHG-------------HTN-QPHRSG------ 125
           ++D    +F E    N   W AII    +HG             H+N +P+         
Sbjct: 771 ISDA-EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLS 830

Query: 126 --------EEGFFYFNSMVEVHGSNPGYEHYACIVDLLGRAEQMNRAKRFIEVMPIKPEA 158
                   ++G  YF SM   +G +P  EHY C+VD+L RA  ++RAK FI+ MPIKP+A
Sbjct: 831 ACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA 861

[Close]

BLAST of CmaCh11G011880 vs. ExPASy Swiss-Prot
Match: Q9LW63 (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.0e-12
Identity = 52/167 (31.14%), Postives = 80/167 (47.90%), Query Frame = 0


Query: 2   ACVH------GDQMHFLIWKHGFHAEVFVASALVDI------TKFMIGPFS-LTVLDEVS 61
           AC H      G Q+H  + + GF + +F+ASALVD+       K     F  + VLDEVS
Sbjct: 352 ACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS 411

Query: 62  FSSALSSLGTMYAKCSSLADVFFWRFEETKDDNVFCWTAIIATCQQHGHTNQPHRSGEEG 121
           +++ +     ++        +F     +    N   + A++  C   G         +E 
Sbjct: 412 WTAIIMG-HALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLV-------DEA 471

Query: 122 FFYFNSMVEVHGSNPGYEHYACIVDLLGRAEQMNRAKRFIEVMPIKP 156
           + YFNSM +V+G N   EHYA + DLLGRA ++  A  FI  M ++P
Sbjct: 472 WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEP 510

[Close]

BLAST of CmaCh11G011880 vs. ExPASy Swiss-Prot
Match: Q9LZ19 (Pentatricopeptide repeat-containing protein At5g04780, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 3.4e-12
Identity = 54/186 (29.03%), Postives = 77/186 (41.40%), Query Frame = 0


Query: 2   ACVHGDQMHFLIWKHGFHAEVFVASALVDITKFMIGPFSLTVLDEVSFSSALSSLGTMYA 61
           A + G QMH +I K GF + VFVAS+ VD                            MYA
Sbjct: 278 ALIEGKQMHAVICKSGFGSNVFVASSAVD----------------------------MYA 337

Query: 62  KCSSLADVFFWRFEETKDDNVFCWTAIIATCQQHG-----------------HTNQPHRS 121
           KC SL + +   F E ++ N+  W  II+   +H                  H N+   S
Sbjct: 338 KCGSLRESYI-IFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFS 397

Query: 122 G-----------EEGFFYFNSMVEVHGSNPGYEHYACIVDLLGRAEQMNRAKRFIEVMPI 160
                       EEG  +F  M   +G +P   HY+C+VD+LGRA  ++ A   I+ +P 
Sbjct: 398 SLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPF 434

[Close]

BLAST of CmaCh11G011880 vs. ExPASy Swiss-Prot
Match: Q9LFL5 (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-12
Identity = 44/125 (35.20%), Postives = 60/125 (48.00%), Query Frame = 0


Query: 59  MYAKCSSLADVFFWRFEETKDDNVFCWTAIIATCQQHGHTNQP----------------- 118
           MYAKC S++D     F+     N   WT+++     HG+  +                  
Sbjct: 522 MYAKCGSISDARL-VFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGV 581

Query: 119 ---------HRSG--EEGFFYFNSMVEVHGSNPGYEHYACIVDLLGRAEQMNRAKRFIEV 156
                      SG  ++G  YFN M  V G +PG EHYAC+VDLLGRA ++N A R IE 
Sbjct: 582 TLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEE 641

[Close]

BLAST of CmaCh11G011880 vs. ExPASy Swiss-Prot
Match: Q9STE1 (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E36 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-11
Identity = 44/133 (33.08%), Postives = 60/133 (45.11%), Query Frame = 0


Query: 54  SSLGTMYAKCSSLADVFFWRFEETKDDNVFCWTAIIATCQQHGHTNQP--------HRSG 113
           S+L  MYAKC +L       F+  K+ N+  W +IIA C  HG              +SG
Sbjct: 581 STLIDMYAKCGNLKAAMN-VFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSG 640

Query: 114 ---------------------EEGFFYFNSMVEVHGSNPGYEHYACIVDLLGRAEQMNRA 158
                                +EG  +F SM E +G  P  EHYAC+VDL GRA ++  A
Sbjct: 641 IRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEA 700

[Close]

BLAST of CmaCh11G011880 vs. TAIR 10
Match: AT4G13650.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-14
Identity = 56/180 (31.11%), Postives = 80/180 (44.44%), Query Frame = 0


Query: 6   GDQMHFLIWKHGFHAEVFVASALVDITKFMIGPFSLTVLDEVSFSSALSSLGTMYAKCSS 65
           G Q+H +I K G+ +E  V +AL+                            +MYAKC S
Sbjct: 711 GKQVHAVITKTGYDSETEVCNALI----------------------------SMYAKCGS 770

Query: 66  LADVFFWRFEETKDDNVFCWTAIIATCQQHG-------------HTN-QPHRSG------ 125
           ++D    +F E    N   W AII    +HG             H+N +P+         
Sbjct: 771 ISDA-EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLS 830

Query: 126 --------EEGFFYFNSMVEVHGSNPGYEHYACIVDLLGRAEQMNRAKRFIEVMPIKPEA 158
                   ++G  YF SM   +G +P  EHY C+VD+L RA  ++RAK FI+ MPIKP+A
Sbjct: 831 ACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDA 861

[Close]

BLAST of CmaCh11G011880 vs. TAIR 10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-13
Identity = 52/167 (31.14%), Postives = 80/167 (47.90%), Query Frame = 0


Query: 2   ACVH------GDQMHFLIWKHGFHAEVFVASALVDI------TKFMIGPFS-LTVLDEVS 61
           AC H      G Q+H  + + GF + +F+ASALVD+       K     F  + VLDEVS
Sbjct: 352 ACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVS 411

Query: 62  FSSALSSLGTMYAKCSSLADVFFWRFEETKDDNVFCWTAIIATCQQHGHTNQPHRSGEEG 121
           +++ +     ++        +F     +    N   + A++  C   G         +E 
Sbjct: 412 WTAIIMG-HALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLV-------DEA 471

Query: 122 FFYFNSMVEVHGSNPGYEHYACIVDLLGRAEQMNRAKRFIEVMPIKP 156
           + YFNSM +V+G N   EHYA + DLLGRA ++  A  FI  M ++P
Sbjct: 472 WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEP 510

[Close]

BLAST of CmaCh11G011880 vs. TAIR 10
Match: AT5G04780.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-13
Identity = 54/186 (29.03%), Postives = 77/186 (41.40%), Query Frame = 0


Query: 2   ACVHGDQMHFLIWKHGFHAEVFVASALVDITKFMIGPFSLTVLDEVSFSSALSSLGTMYA 61
           A + G QMH +I K GF + VFVAS+ VD                            MYA
Sbjct: 278 ALIEGKQMHAVICKSGFGSNVFVASSAVD----------------------------MYA 337

Query: 62  KCSSLADVFFWRFEETKDDNVFCWTAIIATCQQHG-----------------HTNQPHRS 121
           KC SL + +   F E ++ N+  W  II+   +H                  H N+   S
Sbjct: 338 KCGSLRESYI-IFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFS 397

Query: 122 G-----------EEGFFYFNSMVEVHGSNPGYEHYACIVDLLGRAEQMNRAKRFIEVMPI 160
                       EEG  +F  M   +G +P   HY+C+VD+LGRA  ++ A   I+ +P 
Sbjct: 398 SLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPF 434

[Close]

BLAST of CmaCh11G011880 vs. TAIR 10
Match: AT5G16860.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.2e-13
Identity = 44/125 (35.20%), Postives = 60/125 (48.00%), Query Frame = 0


Query: 59  MYAKCSSLADVFFWRFEETKDDNVFCWTAIIATCQQHGHTNQP----------------- 118
           MYAKC S++D     F+     N   WT+++     HG+  +                  
Sbjct: 522 MYAKCGSISDARL-VFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGV 581

Query: 119 ---------HRSG--EEGFFYFNSMVEVHGSNPGYEHYACIVDLLGRAEQMNRAKRFIEV 156
                      SG  ++G  YFN M  V G +PG EHYAC+VDLLGRA ++N A R IE 
Sbjct: 582 TLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEE 641

[Close]

BLAST of CmaCh11G011880 vs. TAIR 10
Match: AT4G21300.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 7.1e-13
Identity = 44/133 (33.08%), Postives = 60/133 (45.11%), Query Frame = 0


Query: 54  SSLGTMYAKCSSLADVFFWRFEETKDDNVFCWTAIIATCQQHGHTNQP--------HRSG 113
           S+L  MYAKC +L       F+  K+ N+  W +IIA C  HG              +SG
Sbjct: 581 STLIDMYAKCGNLKAAMN-VFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSG 640

Query: 114 ---------------------EEGFFYFNSMVEVHGSNPGYEHYACIVDLLGRAEQMNRA 158
                                +EG  +F SM E +G  P  EHYAC+VDL GRA ++  A
Sbjct: 641 IRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEA 700

The following BLAST results are available for this feature:

BLAST of CmaCh11G011880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVP7	2.4e-13	31.11	Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana OX...	[more]
Q9LW63	2.0e-12	31.14	Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th...	[more]
Q9LZ19	3.4e-12	29.03	Pentatricopeptide repeat-containing protein At5g04780, mitochondrial OS=Arabidop...	[more]
Q9LFL5	5.8e-12	35.20	Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX...	[more]
Q9STE1	1.0e-11	33.08	Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmaCh11G011880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13650.1	1.7e-14	31.11	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G23330.1	1.4e-13	31.14	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G04780.1	2.4e-13	29.03	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G16860.1	4.2e-13	35.20	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G21300.1	7.1e-13	33.08	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 40..176 e-value: 4.0E-9 score: 38.3
None	No IPR available	PANTHER	PTHR24015:SF1954	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 3..31
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 3..31
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 51..100 coord: 106..159
None	No IPR available	PANTHER	PTHR24015:SF1954	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 51..100 coord: 106..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G011880.1	CmaCh11G011880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding