CmaCh11G011800 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G011800
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein of unknown function (DUF1644)
Location	Cma_Chr11: 6887242 .. 6888363 (-)
RNA-Seq Expression	CmaCh11G011800
Synteny	CmaCh11G011800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAAGGGAGAAGGGGACGTCGCAGGATGGCTTCCCGACAATTCAGATCAAACCCATATCCACTCCCTTATAAGCGGGATTTCACAGAGGATTTGTGCCCAAAGAATTGTGTCAGCGCTCTGGATAAGAAGTATTGGGAAGATGCAACATGCTCTGTATGCATGGAATACCCTCACAATGCTGTTCTTTTACTCTGTTCATCTCATGATAAGGGTTGTCGTCCCTATATGTGTGGCACAAGCCTTCGTTATTCCAACTGCCTTGACCAGTACAAAAAGGCTTACACCAAAGTTATTTCGTCCAACAGTGCACAACCAGTACACGCCTCAATTGATTATTCAGCTGTTGTAGAGGATGCAAGTTTTCTTGGTGAAAATCATGAAGTGACTGAGCTTGCATGCCCCCTCTGTCGCGGACAGGTGAAAGGATGGACCGTGGTTGAGCCTGCCAGAGAATATCTGAATGCAAAAAAGAGGACCTGCATGCAGGACAGCTGCACGTTTTTAGGAAACTACAAGGAACTGAGGAAGCATGTGAGACAGGAGCACCCATCCACAAGGCCACGGGAGGTAGATCCCGTGCTTGAACAAAAATGGAGAAGACTGGAACGGGAATGTGAAAGGAACGACGTGATGAGCACAATCAGGTCGACAATGCCCAGAGCTGTGGTCTTTGGGGATTATGTGATAGAAGGAAATAGCTTTGGGTTTGATTCTGAGGAAGAGGAAGCAGGGTTGAATGCGAATTCGAATGCGAATGCGGCTGAGAGGGATGGGGGCTTTGAAGTGGGCTTTGATAGTAATCTGGTGAATGTGTTTCTTCTGCTACATGCCTTTGGTCCGTCAAGTAGCGACCTCAATAGACGGCTAAGGCAGCAGCAGCAGCAGCCAGAGAGGAGTTTCCCTCCCGGACCAAATGAAGGCGCTACAGGTATTATTCCCAACACCACTCCTCTCAATAGTTTTGATTCCATTAATCTAGACAGTGACAATGGCGGAAGTGGTGGCAATGACAACGGGGGCAGCATGTCATTGGTTAGCCGCCTCCGCCGCCACGGAAGGGTGCTGTTGGGACGGTCAGGTAGGAGACGTAGGCATAGAGAGAGTAGTAGTAGATGA

mRNA sequence

ATGGCAAAAGGGAGAAGGGGACGTCGCAGGATGGCTTCCCGACAATTCAGATCAAACCCATATCCACTCCCTTATAAGCGGGATTTCACAGAGGATTTGTGCCCAAAGAATTGTGTCAGCGCTCTGGATAAGAAGTATTGGGAAGATGCAACATGCTCTGTATGCATGGAATACCCTCACAATGCTGTTCTTTTACTCTGTTCATCTCATGATAAGGGTTGTCGTCCCTATATGTGTGGCACAAGCCTTCGTTATTCCAACTGCCTTGACCAGTACAAAAAGGCTTACACCAAAGTTATTTCGTCCAACAGTGCACAACCAGTACACGCCTCAATTGATTATTCAGCTGTTGTAGAGGATGCAAGTTTTCTTGGTGAAAATCATGAAGTGACTGAGCTTGCATGCCCCCTCTGTCGCGGACAGGTGAAAGGATGGACCGTGGTTGAGCCTGCCAGAGAATATCTGAATGCAAAAAAGAGGACCTGCATGCAGGACAGCTGCACGTTTTTAGGAAACTACAAGGAACTGAGGAAGCATGTGAGACAGGAGCACCCATCCACAAGGCCACGGGAGGTAGATCCCGTGCTTGAACAAAAATGGAGAAGACTGGAACGGGAATGTGAAAGGAACGACGTGATGAGCACAATCAGGTCGACAATGCCCAGAGCTGTGGTCTTTGGGGATTATGTGATAGAAGGAAATAGCTTTGGGTTTGATTCTGAGGAAGAGGAAGCAGGGTTGAATGCGAATTCGAATGCGAATGCGGCTGAGAGGGATGGGGGCTTTGAAGTGGGCTTTGATAGTAATCTGGTGAATGTGTTTCTTCTGCTACATGCCTTTGGTCCGTCAAGTAGCGACCTCAATAGACGGCTAAGGCAGCAGCAGCAGCAGCCAGAGAGGAGTTTCCCTCCCGGACCAAATGAAGGCGCTACAGGTATTATTCCCAACACCACTCCTCTCAATAGTTTTGATTCCATTAATCTAGACAGTGACAATGGCGGAAGTGGTGGCAATGACAACGGGGGCAGCATGTCATTGGTTAGCCGCCTCCGCCGCCACGGAAGGGTGCTGTTGGGACGGTCAGGTAGGAGACGTAGGCATAGAGAGAGTAGTAGTAGATGA

Coding sequence (CDS)

ATGGCAAAAGGGAGAAGGGGACGTCGCAGGATGGCTTCCCGACAATTCAGATCAAACCCATATCCACTCCCTTATAAGCGGGATTTCACAGAGGATTTGTGCCCAAAGAATTGTGTCAGCGCTCTGGATAAGAAGTATTGGGAAGATGCAACATGCTCTGTATGCATGGAATACCCTCACAATGCTGTTCTTTTACTCTGTTCATCTCATGATAAGGGTTGTCGTCCCTATATGTGTGGCACAAGCCTTCGTTATTCCAACTGCCTTGACCAGTACAAAAAGGCTTACACCAAAGTTATTTCGTCCAACAGTGCACAACCAGTACACGCCTCAATTGATTATTCAGCTGTTGTAGAGGATGCAAGTTTTCTTGGTGAAAATCATGAAGTGACTGAGCTTGCATGCCCCCTCTGTCGCGGACAGGTGAAAGGATGGACCGTGGTTGAGCCTGCCAGAGAATATCTGAATGCAAAAAAGAGGACCTGCATGCAGGACAGCTGCACGTTTTTAGGAAACTACAAGGAACTGAGGAAGCATGTGAGACAGGAGCACCCATCCACAAGGCCACGGGAGGTAGATCCCGTGCTTGAACAAAAATGGAGAAGACTGGAACGGGAATGTGAAAGGAACGACGTGATGAGCACAATCAGGTCGACAATGCCCAGAGCTGTGGTCTTTGGGGATTATGTGATAGAAGGAAATAGCTTTGGGTTTGATTCTGAGGAAGAGGAAGCAGGGTTGAATGCGAATTCGAATGCGAATGCGGCTGAGAGGGATGGGGGCTTTGAAGTGGGCTTTGATAGTAATCTGGTGAATGTGTTTCTTCTGCTACATGCCTTTGGTCCGTCAAGTAGCGACCTCAATAGACGGCTAAGGCAGCAGCAGCAGCAGCCAGAGAGGAGTTTCCCTCCCGGACCAAATGAAGGCGCTACAGGTATTATTCCCAACACCACTCCTCTCAATAGTTTTGATTCCATTAATCTAGACAGTGACAATGGCGGAAGTGGTGGCAATGACAACGGGGGCAGCATGTCATTGGTTAGCCGCCTCCGCCGCCACGGAAGGGTGCTGTTGGGACGGTCAGGTAGGAGACGTAGGCATAGAGAGAGTAGTAGTAGATGA

Protein sequence

MAKGRRGRRRMASRQFRSNPYPLPYKRDFTEDLCPKNCVSALDKKYWEDATCSVCMEYPHNAVLLLCSSHDKGCRPYMCGTSLRYSNCLDQYKKAYTKVISSNSAQPVHASIDYSAVVEDASFLGENHEVTELACPLCRGQVKGWTVVEPAREYLNAKKRTCMQDSCTFLGNYKELRKHVRQEHPSTRPREVDPVLEQKWRRLERECERNDVMSTIRSTMPRAVVFGDYVIEGNSFGFDSEEEEAGLNANSNANAAERDGGFEVGFDSNLVNVFLLLHAFGPSSSDLNRRLRQQQQQPERSFPPGPNEGATGIIPNTTPLNSFDSINLDSDNGGSGGNDNGGSMSLVSRLRRHGRVLLGRSGRRRRHRESSSR

Homology

[Close]

BLAST of CmaCh11G011800 vs. TAIR 10
Match: AT1G68140.1 (Protein of unknown function (DUF1644) )

HSP 1 Score: 326.6 bits (836), Expect = 2.5e-89
Identity = 190/375 (50.67%), Postives = 235/375 (62.67%), Query Frame = 0


Query: 1   MAKGRRGRRRMASRQF--RSNPYPLP-YKRDFTEDLCPKNCVSALDKKYWEDATCSVCME 60
           MAK R+  RR+ SR+F  R+ PY  P  KR    ++  ++C   L+K+ WE+  CSVCME
Sbjct: 1   MAKARKAGRRVPSRRFRARAKPYKFPSSKRLVARNMFAEDCSKCLEKRDWENVICSVCME 60

Query: 61  YPHNAVLLLCSSHDKGCRPYMCGTSLRYSNCLDQYKKAYTKVISSNSAQPVHASIDYSAV 120
            PHNAVLLLCSSHDKGCRPYMCGTS RYSNCLDQYKKA  K+ +S      H  I+ S  
Sbjct: 61  CPHNAVLLLCSSHDKGCRPYMCGTSFRYSNCLDQYKKASAKLKTSG-----HQQINKS-- 120

Query: 121 VEDASFLGENHEVTELACPLCRGQVKGWTVVEPAREYLNAKKRTCMQDSCTFLGNYKELR 180
                      E+  L CPLCRGQVKGWT+V+PAR++LN KKR CMQ++C + G +KELR
Sbjct: 121 -----------ELGNLTCPLCRGQVKGWTIVQPARDFLNLKKRICMQENCVYAGTFKELR 180

Query: 181 KHVRQEHPSTRPREVDPVLEQKWRRLERECERNDVMSTIRSTMPRAVVFGDYVIEGNSFG 240
           KH++ +HPS +PREVDP +EQ WRRLE E +R+DVMSTIRSTMP  VV+GDYVIE N   
Sbjct: 181 KHMKVDHPSAKPREVDPDVEQNWRRLEIEHDRDDVMSTIRSTMPGTVVYGDYVIERN--- 240

Query: 241 FDSEEEEAGLNAN-SNANAAERDGGFEVGFDSNLVNVFLLLHAFGPSSSDLNRRLRQQQQ 300
                     NAN S+++    D G +  F  NLVNVFLLLHAFG S + + R       
Sbjct: 241 ----------NANGSDSDEGGDDDGIDAAFGRNLVNVFLLLHAFGASGNQIRR------- 300

Query: 301 QPERSFPPGPNEGATGIIPNTTPLNSFDSINLDSDNGGSGGNDNGGSMSLVSRLRRHGRV 360
                     +  +T I   T+ LN F     + +      N N    SL SR+RR GRV
Sbjct: 301 ------SDSDSNDSTTINRGTSELN-FSEEEEEEEEEERHSNSN----SLASRMRRQGRV 326

Query: 361 LLGRSGRRRRHRESS 372
           LLGRSGRRRR RE++
Sbjct: 361 LLGRSGRRRRDREAN 326

[Close]

BLAST of CmaCh11G011800 vs. TAIR 10
Match: AT1G68140.3 (Protein of unknown function (DUF1644) )

HSP 1 Score: 326.6 bits (836), Expect = 2.5e-89
Identity = 190/375 (50.67%), Postives = 235/375 (62.67%), Query Frame = 0


Query: 1   MAKGRRGRRRMASRQF--RSNPYPLP-YKRDFTEDLCPKNCVSALDKKYWEDATCSVCME 60
           MAK R+  RR+ SR+F  R+ PY  P  KR    ++  ++C   L+K+ WE+  CSVCME
Sbjct: 1   MAKARKAGRRVPSRRFRARAKPYKFPSSKRLVARNMFAEDCSKCLEKRDWENVICSVCME 60

Query: 61  YPHNAVLLLCSSHDKGCRPYMCGTSLRYSNCLDQYKKAYTKVISSNSAQPVHASIDYSAV 120
            PHNAVLLLCSSHDKGCRPYMCGTS RYSNCLDQYKKA  K+ +S      H  I+ S  
Sbjct: 61  CPHNAVLLLCSSHDKGCRPYMCGTSFRYSNCLDQYKKASAKLKTSG-----HQQINKS-- 120

Query: 121 VEDASFLGENHEVTELACPLCRGQVKGWTVVEPAREYLNAKKRTCMQDSCTFLGNYKELR 180
                      E+  L CPLCRGQVKGWT+V+PAR++LN KKR CMQ++C + G +KELR
Sbjct: 121 -----------ELGNLTCPLCRGQVKGWTIVQPARDFLNLKKRICMQENCVYAGTFKELR 180

Query: 181 KHVRQEHPSTRPREVDPVLEQKWRRLERECERNDVMSTIRSTMPRAVVFGDYVIEGNSFG 240
           KH++ +HPS +PREVDP +EQ WRRLE E +R+DVMSTIRSTMP  VV+GDYVIE N   
Sbjct: 181 KHMKVDHPSAKPREVDPDVEQNWRRLEIEHDRDDVMSTIRSTMPGTVVYGDYVIERN--- 240

Query: 241 FDSEEEEAGLNAN-SNANAAERDGGFEVGFDSNLVNVFLLLHAFGPSSSDLNRRLRQQQQ 300
                     NAN S+++    D G +  F  NLVNVFLLLHAFG S + + R       
Sbjct: 241 ----------NANGSDSDEGGDDDGIDAAFGRNLVNVFLLLHAFGASGNQIRR------- 300

Query: 301 QPERSFPPGPNEGATGIIPNTTPLNSFDSINLDSDNGGSGGNDNGGSMSLVSRLRRHGRV 360
                     +  +T I   T+ LN F     + +      N N    SL SR+RR GRV
Sbjct: 301 ------SDSDSNDSTTINRGTSELN-FSEEEEEEEEEERHSNSN----SLASRMRRQGRV 326

Query: 361 LLGRSGRRRRHRESS 372
           LLGRSGRRRR RE++
Sbjct: 361 LLGRSGRRRRDREAN 326

[Close]

BLAST of CmaCh11G011800 vs. TAIR 10
Match: AT1G68140.2 (Protein of unknown function (DUF1644) )

HSP 1 Score: 295.8 bits (756), Expect = 4.8e-80
Identity = 179/375 (47.73%), Postives = 222/375 (59.20%), Query Frame = 0


Query: 1   MAKGRRGRRRMASRQF--RSNPYPLP-YKRDFTEDLCPKNCVSALDKKYWEDATCSVCME 60
           MAK R+  RR+ SR+F  R+ PY  P  KR    ++  ++C   L+K+ WE+  CSVCME
Sbjct: 1   MAKARKAGRRVPSRRFRARAKPYKFPSSKRLVARNMFAEDCSKCLEKRDWENVICSVCME 60

Query: 61  YPHNAVLLLCSSHDKGCRPYMCGTSLRYSNCLDQYKKAYTKVISSNSAQPVHASIDYSAV 120
            PHNAVLLLCSSHDKGCRPYMCGTS RYSNCLDQYKKA  K+ +S      H  I+ S  
Sbjct: 61  CPHNAVLLLCSSHDKGCRPYMCGTSFRYSNCLDQYKKASAKLKTSG-----HQQINKS-- 120

Query: 121 VEDASFLGENHEVTELACPLCRGQVKGWTVVEPAREYLNAKKRTCMQDSCTFLGNYKELR 180
                      E+  L CPLCRGQVKGWT+V+PAR++LN KKR CMQ++C + G +KELR
Sbjct: 121 -----------ELGNLTCPLCRGQVKGWTIVQPARDFLNLKKRICMQENCVYAGTFKELR 180

Query: 181 KHVRQEHPSTRPREVDPVLEQKWRRLERECERNDVMSTIRSTMPRAVVFGDYVIEGNSFG 240
           KH++ +HPS +PREVDP +EQ WRRLE E +R+DVMSTIRSTMP  VV+GDYVIE N   
Sbjct: 181 KHMKVDHPSAKPREVDPDVEQNWRRLEIEHDRDDVMSTIRSTMPGTVVYGDYVIERN--- 240

Query: 241 FDSEEEEAGLNAN-SNANAAERDGGFEVGFDSNLVNVFLLLHAFGPSSSDLNRRLRQQQQ 300
                     NAN S+++    D G +  FDSN              S+ +NR       
Sbjct: 241 ----------NANGSDSDEGGDDDGIDAAFDSN-------------DSTTINR------- 300

Query: 301 QPERSFPPGPNEGATGIIPNTTPLNSFDSINLDSDNGGSGGNDNGGSMSLVSRLRRHGRV 360
                               T+ LN F     + +      N N    SL SR+RR GRV
Sbjct: 301 -------------------GTSELN-FSEEEEEEEEEERHSNSN----SLASRMRRQGRV 300

Query: 361 LLGRSGRRRRHRESS 372
           LLGRSGRRRR RE++
Sbjct: 361 LLGRSGRRRRDREAN 300

[Close]

BLAST of CmaCh11G011800 vs. TAIR 10
Match: AT1G77770.1 (Protein of unknown function (DUF1644) )

HSP 1 Score: 233.8 bits (595), Expect = 2.2e-61
Identity = 113/210 (53.81%), Postives = 148/210 (70.48%), Query Frame = 0


Query: 44  KKYWEDATCSVCMEYPHNAVLLLCSSHDKGCRPYMCGTSLRYSNCLDQYKKAYTKVISSN 103
           KK W  +TC VC+E PHNAVLLLCSS+ KGCRPYMC TS R++NCLDQY+K+Y    + N
Sbjct: 23  KKEWAGSTCPVCLESPHNAVLLLCSSYHKGCRPYMCATSSRFANCLDQYRKSYG---NEN 82

Query: 104 SAQPVHASIDYSAVVEDASFLGENHEVTELACPLCRGQVKGWTVVEPAREYLNAKKRTCM 163
           S QP                        EL CPLCRGQVKGWTVV+ AR + N+K+RTCM
Sbjct: 83  SGQP------------------------ELLCPLCRGQVKGWTVVKDARMHFNSKRRTCM 142

Query: 164 QDSCTFLGNYKELRKHVRQEHPSTRPREVDPVLEQKWRRLERECERNDVMSTIRSTMPRA 223
           QD+C+FLGN+++L+KH++++HP   PR +DP LE KW+RLERE +R DV+STI S+ P A
Sbjct: 143 QDNCSFLGNFRKLKKHMKEKHPHACPRAIDPALETKWKRLERERDRRDVISTIMSSTPGA 202

Query: 224 VVFGDYVIEGNSFG-FDSEEEEAGLNANSN 253
           VV GDYVIE ++ G +D E+EE   +++ +
Sbjct: 203 VVLGDYVIEPHNRGVYDEEDEEEDYSSDDS 205

[Close]

BLAST of CmaCh11G011800 vs. TAIR 10
Match: AT1G77770.2 (Protein of unknown function (DUF1644) )

HSP 1 Score: 233.8 bits (595), Expect = 2.2e-61
Identity = 113/210 (53.81%), Postives = 148/210 (70.48%), Query Frame = 0


Query: 44  KKYWEDATCSVCMEYPHNAVLLLCSSHDKGCRPYMCGTSLRYSNCLDQYKKAYTKVISSN 103
           KK W  +TC VC+E PHNAVLLLCSS+ KGCRPYMC TS R++NCLDQY+K+Y    + N
Sbjct: 23  KKEWAGSTCPVCLESPHNAVLLLCSSYHKGCRPYMCATSSRFANCLDQYRKSYG---NEN 82

Query: 104 SAQPVHASIDYSAVVEDASFLGENHEVTELACPLCRGQVKGWTVVEPAREYLNAKKRTCM 163
           S QP                        EL CPLCRGQVKGWTVV+ AR + N+K+RTCM
Sbjct: 83  SGQP------------------------ELLCPLCRGQVKGWTVVKDARMHFNSKRRTCM 142

Query: 164 QDSCTFLGNYKELRKHVRQEHPSTRPREVDPVLEQKWRRLERECERNDVMSTIRSTMPRA 223
           QD+C+FLGN+++L+KH++++HP   PR +DP LE KW+RLERE +R DV+STI S+ P A
Sbjct: 143 QDNCSFLGNFRKLKKHMKEKHPHACPRAIDPALETKWKRLERERDRRDVISTIMSSTPGA 202

Query: 224 VVFGDYVIEGNSFG-FDSEEEEAGLNANSN 253
           VV GDYVIE ++ G +D E+EE   +++ +
Sbjct: 203 VVLGDYVIEPHNRGVYDEEDEEEDYSSDDS 205

The following BLAST results are available for this feature:

BLAST of CmaCh11G011800 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G011800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68140.1	2.5e-89	50.67	Protein of unknown function (DUF1644)	[more]
AT1G68140.3	2.5e-89	50.67	Protein of unknown function (DUF1644)	[more]
AT1G68140.2	4.8e-80	47.73	Protein of unknown function (DUF1644)	[more]
AT1G77770.1	2.2e-61	53.81	Protein of unknown function (DUF1644)	[more]
AT1G77770.2	2.2e-61	53.81	Protein of unknown function (DUF1644)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012866	Protein of unknown function DUF1644	PFAM	PF07800	DUF1644	coord: 48..214 e-value: 1.5E-71 score: 239.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 36..189 e-value: 4.3E-5 score: 25.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 287..373
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 353..373
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 287..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 311..345
None	No IPR available	PANTHER	PTHR31197	OS01G0612600 PROTEIN	coord: 1..368
None	No IPR available	PANTHER	PTHR31197:SF12	FINGER/BTB DOMAIN PROTEIN, PUTATIVE (DUF1644)-RELATED	coord: 1..368

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G011800.1	CmaCh11G011800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane