CmaCh11G011730 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G011730
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	pentatricopeptide repeat-containing protein At4g38150-like
Location	Cma_Chr11: 6833184 .. 6835264 (-)
RNA-Seq Expression	CmaCh11G011730
Synteny	CmaCh11G011730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAAGCAAGCTTTGTCTGCAATTTGCATGCATCATCTAAAATTGCTGCCCAATTTCTTATTCATATGTTTGTAAGTACTGTGTTTAAATATCTCAACTTTTTCTTTCATTTAGTTTGTCAACTATGTTGTGGTTTGACATTAGATTGCTCGACTTGTATAAGTTTTATCGATGTTCCCAAGTGTACATGAAATTTAACATGTTCTTAAAAAAATGTATGAAGATTTAAATTCTGTATTTACCATTAGAAAGACAATGAGTGTTGAGGCCATGGCTTGAAACTAGGGGGAAGATGAAGCAACTTTTTAAATAGTTTAATAGTGCGATTTAAAAGAAGGTATTGGTTATTATAAAAACGAGTTACAAAGGAATTTCTTTTGCTCTTTAAATGAAGGTGTTTGTGAGCCTAATGGATGAAATTGATGTAGATCGGATGTGATTGTTCGGGTGAATGTGGTTGATCAGGTCTCCAAAGAAAATAAATAAATGGAAATACTTGCATTTTCTATTTTAAAAGGAAAAAAAAAACTTCTTTTATGTGATAATTCATGATTTTCATTATTATTCACGTTATGATTTTCAGCTACCGTAGTAAATATTATTCACTTTGAGCACAAGTTATCATGATTTTCAGCTACCGTAGTAAATATTATTCACTTTGAGCATAAGTTATCATGATTTTCAGCTACCGTAGTAAATATTATTCACTTTGAGCACAAGTTATCATGATTTTACTTTGAAATTTCCCAAAACGTCTCACTCATGATCATTTCCTAAATTCTCTAAATTAGCAGATGTGTTACTTTCTTCCAGTACCTCTGAACAAATTACATTTCTCCTTATTCGAGGCCTTATTTTTTACAATGTTTTCGAGGACCCTCGACTCCTTTTCCTTTTAGATGAAAGTTTCACATCGACTTATGTAAATAATGATCATGAATTTATAATTAAATAATTCTATATTCCGATGCTTTTCCTATCCTAATCAAAACCATGAAAATTTATGTGGAAAATAGAACATATCAATGTCACATGGGATGGGGGGAGAGTAACATGCTCTGCCAGGCCTCTTAAGAACTCACAGGAAAAGAGCATTTGCAGCGCACTCCGCCGAACAGCATCCATCTGCCGCATCCCCACTTACAGAGAGGGAGGTTAACGCGCAATTCGCTAAGGCTATGGCGAACAGAATAACTCGAGCCCTTCTTGTTGCCTGCACCACCATCGCCTCATCTCCTTCATCCTTCTCCCCCAACCCATCGTTTCTAAATCATCATTTTCGTTGCAAACCACTGACCATTTTCTATATCAACGCCTGCAACAACAGATTGTTCGCCTACTCCTCATCTTCAGAAGCTAACAAGATCAACACCAAAGTCAATTTCTCAATCTCACACTCCGATGAAGACGAAGAAGACGATTTTCGGGTTGGGTCCGTAAAAGAAGTGGGCAAAACCAAAAATCTCCCACCGCCGTATGATCCCTTCAGCAAGAAGCCGGTTGTGGAAGAGGCGGAAGACCCAAAGAATTTGCAGGAAATCTTCCATAAGATGAGGACAGATGGTTTTTTAAACAATGCCGCCAAGATGTTCGACGAAATGTCTAAGGATGGTTTAACCCACGAGGCTCTGCAGCTCTTCTCTGAAATTAAGGACAAAGGTCACATGCCTGATGTTGTCGCCCACACAGCCGTCATAGAAGCCTACGTGAACGCGGGTCAGAGCAAGGAAGCTCACAAGGTGTACCTGCGAATGCTTGCCTCTGGAGTGACCCCAAATGCCTATACTTACACTGTTCTAATCAAAGGGCTTGCTGCGGATCCCAAGTTCGTGGGGGATGCGAAGAAGTTCTTGCTGGAAATGATGGGCAGGGGATTGCGACCCAATGCTGGGACCTATACTGCCGTCTTTGAGGCTCTTGTGAGGGATGCCAAAGTGGATGAAGCAAGAGAGTTGTTGGTGCAAATGGAGGCTAAGGGGTTTGTGGCTAATGAGAAGGATGTGAAGGAGATTCTCCATACCAAAAGGGGAAGGGGACCCTTGTTTAGGACCCTCATCAACATTCTCTTCAACAAGTAG

mRNA sequence

ATGCAAAAGCAAGCTTTGTCTGCAATTTGCATGCATCATCTAAAATTGCTGCCCAATTTCTTATTCATATGTTTGAAAAGAGCATTTGCAGCGCACTCCGCCGAACAGCATCCATCTGCCGCATCCCCACTTACAGAGAGGGAGGTTAACGCGCAATTCGCTAAGGCTATGGCGAACAGAATAACTCGAGCCCTTCTTGTTGCCTGCACCACCATCGCCTCATCTCCTTCATCCTTCTCCCCCAACCCATCGTTTCTAAATCATCATTTTCGTTGCAAACCACTGACCATTTTCTATATCAACGCCTGCAACAACAGATTGTTCGCCTACTCCTCATCTTCAGAAGCTAACAAGATCAACACCAAAGTCAATTTCTCAATCTCACACTCCGATGAAGACGAAGAAGACGATTTTCGGGTTGGGTCCGTAAAAGAAGTGGGCAAAACCAAAAATCTCCCACCGCCGTATGATCCCTTCAGCAAGAAGCCGGTTGTGGAAGAGGCGGAAGACCCAAAGAATTTGCAGGAAATCTTCCATAAGATGAGGACAGATGGTTTTTTAAACAATGCCGCCAAGATGTTCGACGAAATGTCTAAGGATGGTTTAACCCACGAGGCTCTGCAGCTCTTCTCTGAAATTAAGGACAAAGGTCACATGCCTGATGTTGTCGCCCACACAGCCGTCATAGAAGCCTACGTGAACGCGGGTCAGAGCAAGGAAGCTCACAAGGTGTACCTGCGAATGCTTGCCTCTGGAGTGACCCCAAATGCCTATACTTACACTGTTCTAATCAAAGGGCTTGCTGCGGATCCCAAGTTCGTGGGGGATGCGAAGAAGTTCTTGCTGGAAATGATGGGCAGGGGATTGCGACCCAATGCTGGGACCTATACTGCCGTCTTTGAGGCTCTTGTGAGGGATGCCAAAGTGGATGAAGCAAGAGAGTTGTTGGTGCAAATGGAGGCTAAGGGGTTTGTGGCTAATGAGAAGGATGTGAAGGAGATTCTCCATACCAAAAGGGGAAGGGGACCCTTGTTTAGGACCCTCATCAACATTCTCTTCAACAAGTAG

Coding sequence (CDS)

ATGCAAAAGCAAGCTTTGTCTGCAATTTGCATGCATCATCTAAAATTGCTGCCCAATTTCTTATTCATATGTTTGAAAAGAGCATTTGCAGCGCACTCCGCCGAACAGCATCCATCTGCCGCATCCCCACTTACAGAGAGGGAGGTTAACGCGCAATTCGCTAAGGCTATGGCGAACAGAATAACTCGAGCCCTTCTTGTTGCCTGCACCACCATCGCCTCATCTCCTTCATCCTTCTCCCCCAACCCATCGTTTCTAAATCATCATTTTCGTTGCAAACCACTGACCATTTTCTATATCAACGCCTGCAACAACAGATTGTTCGCCTACTCCTCATCTTCAGAAGCTAACAAGATCAACACCAAAGTCAATTTCTCAATCTCACACTCCGATGAAGACGAAGAAGACGATTTTCGGGTTGGGTCCGTAAAAGAAGTGGGCAAAACCAAAAATCTCCCACCGCCGTATGATCCCTTCAGCAAGAAGCCGGTTGTGGAAGAGGCGGAAGACCCAAAGAATTTGCAGGAAATCTTCCATAAGATGAGGACAGATGGTTTTTTAAACAATGCCGCCAAGATGTTCGACGAAATGTCTAAGGATGGTTTAACCCACGAGGCTCTGCAGCTCTTCTCTGAAATTAAGGACAAAGGTCACATGCCTGATGTTGTCGCCCACACAGCCGTCATAGAAGCCTACGTGAACGCGGGTCAGAGCAAGGAAGCTCACAAGGTGTACCTGCGAATGCTTGCCTCTGGAGTGACCCCAAATGCCTATACTTACACTGTTCTAATCAAAGGGCTTGCTGCGGATCCCAAGTTCGTGGGGGATGCGAAGAAGTTCTTGCTGGAAATGATGGGCAGGGGATTGCGACCCAATGCTGGGACCTATACTGCCGTCTTTGAGGCTCTTGTGAGGGATGCCAAAGTGGATGAAGCAAGAGAGTTGTTGGTGCAAATGGAGGCTAAGGGGTTTGTGGCTAATGAGAAGGATGTGAAGGAGATTCTCCATACCAAAAGGGGAAGGGGACCCTTGTTTAGGACCCTCATCAACATTCTCTTCAACAAGTAG

Protein sequence

MQKQALSAICMHHLKLLPNFLFICLKRAFAAHSAEQHPSAASPLTEREVNAQFAKAMANRITRALLVACTTIASSPSSFSPNPSFLNHHFRCKPLTIFYINACNNRLFAYSSSSEANKINTKVNFSISHSDEDEEDDFRVGSVKEVGKTKNLPPPYDPFSKKPVVEEAEDPKNLQEIFHKMRTDGFLNNAAKMFDEMSKDGLTHEALQLFSEIKDKGHMPDVVAHTAVIEAYVNAGQSKEAHKVYLRMLASGVTPNAYTYTVLIKGLAADPKFVGDAKKFLLEMMGRGLRPNAGTYTAVFEALVRDAKVDEARELLVQMEAKGFVANEKDVKEILHTKRGRGPLFRTLINILFNK

Homology

[Close]

BLAST of CmaCh11G011730 vs. ExPASy Swiss-Prot
Match: Q9SZL5 (Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana OX=3702 GN=At4g38150 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.6e-27
Identity = 71/206 (34.47%), Postives = 120/206 (58.25%), Query Frame = 0


Query: 130 SDEDEEDDFRVGSVKEVGKTKNLPPPYDPFSKKPVVEEAEDPKNLQEIFHKMRTDGFLNN 189
           SD+   + F++G    V +     P  + + ++P+      P++  EIF KM+  G + N
Sbjct: 82  SDDGFLEQFKLG----VNQDSRETPKPEQYPQEPL----PPPEDSDEIFKKMKEGGLIPN 141

Query: 190 AAKMFDEMSKDGLTHEALQLFSEIKDKGHMPDVVAHTAVIEAYVNAGQSKEAHKVYLRML 249
           A  M D + KDGL  EA++LF  ++DKG +P+VV +TAV+EA+  A + ++A +++ +M 
Sbjct: 142 AVAMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQ 201

Query: 250 ASGVTPNAYTYTVLIKGLAADPKFVGDAKKFLLEMMGRGLRPNAGTYTAVFEALVRDAKV 309
            +G+ PNA++Y VL++GL  +   + DA  F  EM+  G  PN  T+  + +AL R   V
Sbjct: 202 NNGIAPNAFSYGVLVQGL-YNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGV 261

Query: 310 DEARELLVQMEAKGFVANEKDVKEIL 336
           ++A+  +  +  KGF  N K VKE +
Sbjct: 262 EQAQSAIDTLNQKGFAVNVKAVKEFM 278

[Close]

BLAST of CmaCh11G011730 vs. ExPASy Swiss-Prot
Match: B8Y6I0 (Pentatricopeptide repeat-containing protein 10, chloroplastic OS=Zea mays OX=4577 GN=PPR10 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.5e-16
Identity = 56/144 (38.89%), Postives = 75/144 (52.08%), Query Frame = 0


Query: 184 DGFLNNAAKMFDEMSKDGLTHEALQLFSEIKDKGHMPDVVAHTAVIEAYVNAGQSKEAHK 243
           DGF   A+ +     +DGL  EA+  F ++K +GH P VV + A+++ +  AG   EA +
Sbjct: 244 DGF--TASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALR 303

Query: 244 VYLRMLASGVTPNAYTYTVLIKGLAADPKFVGDAKKFLLEMMGRGLRPNAGTYTAVFEAL 303
           V   M  +G  P+A TY  L  G  A   F  +A + L  M  +GL PNA TY  V  A 
Sbjct: 304 VLGEMEQNGCQPDAVTYNEL-AGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAY 363

Query: 304 VRDAKVDEARELLVQMEAKGFVAN 328
               KVDEA  L  QM+  GFV N
Sbjct: 364 GNVGKVDEALALFDQMKKTGFVPN 384

[Close]

BLAST of CmaCh11G011730 vs. ExPASy Swiss-Prot
Match: Q8S8P6 (Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana OX=3702 GN=At2g32630 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-15
Identity = 53/150 (35.33%), Postives = 79/150 (52.67%), Query Frame = 0


Query: 180 KMRTDGFLNNAAKMFDEMSKDGLTHEALQLFSEIKDKGHMPDVVAHTAVIEAYVNAGQSK 239
           K+ T  + N    + D   K+G   EA +LF E+  KG  P+ + +  +I AY   G+ K
Sbjct: 466 KLSTVSYTN----LIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIK 525

Query: 240 EAHKVYLRMLASGVTPNAYTYTVLIKGLAADPKFVGDAKKFLLEMMGRGLRPNAGTYTAV 299
           EA K+   M A+G+ P++YTYT LI G       V +A +   EM  +GL  N+ TYT +
Sbjct: 526 EARKLRANMEANGMDPDSYTYTSLIHGECIADN-VDEAMRLFSEMGLKGLDQNSVTYTVM 585

Query: 300 FEALVRDAKVDEARELLVQMEAKGFVANEK 330
              L +  K DEA  L  +M+ KG+  + K
Sbjct: 586 ISGLSKAGKSDEAFGLYDEMKRKGYTIDNK 610

[Close]

BLAST of CmaCh11G011730 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-14
Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 205 EALQLFSEIKDKGHMPDVVAHTAVIEAYVNAGQSKEAHKVYLRMLASGVTPNAYTYTVLI 264
           EA +LF E+  KG  PD V  T +I  Y  AG  K+A +V+  M+ +G +PN  TYT LI
Sbjct: 404 EAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLI 463

Query: 265 KGLAADPKFVGDAKKFLLEMMGRGLRPNAGTYTAVFEALVRDAKVDEARELLVQMEAKGF 324
            GL  +   +  A + L EM   GL+PN  TY ++   L +   ++EA +L+ + EA G 
Sbjct: 464 DGLCKEGD-LDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 523

Query: 325 VAN 328
            A+
Sbjct: 524 NAD 525

[Close]

BLAST of CmaCh11G011730 vs. ExPASy Swiss-Prot
Match: Q9LSL9 (Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX=3702 GN=At5g65560 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.3e-14
Identity = 47/131 (35.88%), Postives = 69/131 (52.67%), Query Frame = 0


Query: 193 MFDEMSKDGLTHEALQLFSEIKDKGHMPDVVAHTAVIEAYVNAGQSKEAHKVYLRMLASG 252
           M D + K     EA  LF  ++ KG  P+VV +TA+I+ Y  AG+  EAH +  +ML+  
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN 562

Query: 253 VTPNAYTYTVLIKGLAADPKFVGDAKKFLLEMMGRGLRPNAGTYTAVFEALVRDAKVDEA 312
             PN+ T+  LI GL AD K + +A     +M+  GL+P   T T +   L++D   D A
Sbjct: 563 CLPNSLTFNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHA 622

Query: 313 RELLVQMEAKG 324
                QM + G
Sbjct: 623 YSRFQQMLSSG 632

[Close]

BLAST of CmaCh11G011730 vs. TAIR 10
Match: AT5G03560.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 321.6 bits (823), Expect = 7.8e-88
Identity = 165/249 (66.27%), Postives = 199/249 (79.92%), Query Frame = 0


Query: 107 LFAYSSSSEANKINTKVNFSISHSDEDEEDDFRVGSVKEVGKTKNLPPPYDPFSKKPVVE 166
           +FA   SSE  ++NTKVNFS+S  D DEE + +V   ++  K +  PPPYDPFSKKP +E
Sbjct: 119 VFARQFSSETKRVNTKVNFSLSDDDSDEETETQV--TEDSKKQEPPPPPYDPFSKKPAIE 178

Query: 167 EAEDPKNLQEIFHKMRTDGFLNNAAKMFDEMSKDGLTHEALQLFSEIKDKGHMPDVVAHT 226
           E EDPKNLQEIFHKMRT+GF N A KMFD +SKDG THEAL+LFS+IKDK  MPDVVAHT
Sbjct: 179 EPEDPKNLQEIFHKMRTEGFTNEAVKMFDALSKDGRTHEALELFSQIKDKNRMPDVVAHT 238

Query: 227 AVIEAYVNAGQSKEAHKVYLRMLASGVTPNAYTYTVLIKGLAADPKFVGDAKKFLLEMMG 286
           A++EAY NAGQ+KE  KV++RMLASGV+PNAYTY+VLIKGLAAD K   DAKK+LLEMMG
Sbjct: 239 AIVEAYANAGQAKETLKVFMRMLASGVSPNAYTYSVLIKGLAADGKTHKDAKKYLLEMMG 298

Query: 287 RGLRPNAGTYTAVFEALVRDAKVDEARELLVQMEAKGFVANEKDVKEILHTKRGRGPLFR 346
            G+ PNA TYTAVFEA VR+ K + ARELL +M+ KGFV +EK V+E L  KRG+  +FR
Sbjct: 299 NGMSPNAATYTAVFEAFVREGKEESARELLQEMKGKGFVPDEKAVREALEYKRGQ--VFR 358

Query: 347 TLINILFNK 356
           T+IN+LF+K
Sbjct: 359 TVINLLFDK 363

[Close]

BLAST of CmaCh11G011730 vs. TAIR 10
Match: AT4G38150.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-28
Identity = 71/206 (34.47%), Postives = 120/206 (58.25%), Query Frame = 0


Query: 130 SDEDEEDDFRVGSVKEVGKTKNLPPPYDPFSKKPVVEEAEDPKNLQEIFHKMRTDGFLNN 189
           SD+   + F++G    V +     P  + + ++P+      P++  EIF KM+  G + N
Sbjct: 82  SDDGFLEQFKLG----VNQDSRETPKPEQYPQEPL----PPPEDSDEIFKKMKEGGLIPN 141

Query: 190 AAKMFDEMSKDGLTHEALQLFSEIKDKGHMPDVVAHTAVIEAYVNAGQSKEAHKVYLRML 249
           A  M D + KDGL  EA++LF  ++DKG +P+VV +TAV+EA+  A + ++A +++ +M 
Sbjct: 142 AVAMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQ 201

Query: 250 ASGVTPNAYTYTVLIKGLAADPKFVGDAKKFLLEMMGRGLRPNAGTYTAVFEALVRDAKV 309
            +G+ PNA++Y VL++GL  +   + DA  F  EM+  G  PN  T+  + +AL R   V
Sbjct: 202 NNGIAPNAFSYGVLVQGL-YNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGV 261

Query: 310 DEARELLVQMEAKGFVANEKDVKEIL 336
           ++A+  +  +  KGF  N K VKE +
Sbjct: 262 EQAQSAIDTLNQKGFAVNVKAVKEFM 278

[Close]

BLAST of CmaCh11G011730 vs. TAIR 10
Match: AT4G38150.2 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-28
Identity = 71/206 (34.47%), Postives = 120/206 (58.25%), Query Frame = 0


Query: 130 SDEDEEDDFRVGSVKEVGKTKNLPPPYDPFSKKPVVEEAEDPKNLQEIFHKMRTDGFLNN 189
           SD+   + F++G    V +     P  + + ++P+      P++  EIF KM+  G + N
Sbjct: 82  SDDGFLEQFKLG----VNQDSRETPKPEQYPQEPL----PPPEDSDEIFKKMKEGGLIPN 141

Query: 190 AAKMFDEMSKDGLTHEALQLFSEIKDKGHMPDVVAHTAVIEAYVNAGQSKEAHKVYLRML 249
           A  M D + KDGL  EA++LF  ++DKG +P+VV +TAV+EA+  A + ++A +++ +M 
Sbjct: 142 AVAMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQ 201

Query: 250 ASGVTPNAYTYTVLIKGLAADPKFVGDAKKFLLEMMGRGLRPNAGTYTAVFEALVRDAKV 309
            +G+ PNA++Y VL++GL  +   + DA  F  EM+  G  PN  T+  + +AL R   V
Sbjct: 202 NNGIAPNAFSYGVLVQGL-YNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGV 261

Query: 310 DEARELLVQMEAKGFVANEKDVKEIL 336
           ++A+  +  +  KGF  N K VKE +
Sbjct: 262 EQAQSAIDTLNQKGFAVNVKAVKEFM 278

[Close]

BLAST of CmaCh11G011730 vs. TAIR 10
Match: AT2G32630.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 7.2e-17
Identity = 53/150 (35.33%), Postives = 79/150 (52.67%), Query Frame = 0


Query: 180 KMRTDGFLNNAAKMFDEMSKDGLTHEALQLFSEIKDKGHMPDVVAHTAVIEAYVNAGQSK 239
           K+ T  + N    + D   K+G   EA +LF E+  KG  P+ + +  +I AY   G+ K
Sbjct: 466 KLSTVSYTN----LIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIK 525

Query: 240 EAHKVYLRMLASGVTPNAYTYTVLIKGLAADPKFVGDAKKFLLEMMGRGLRPNAGTYTAV 299
           EA K+   M A+G+ P++YTYT LI G       V +A +   EM  +GL  N+ TYT +
Sbjct: 526 EARKLRANMEANGMDPDSYTYTSLIHGECIADN-VDEAMRLFSEMGLKGLDQNSVTYTVM 585

Query: 300 FEALVRDAKVDEARELLVQMEAKGFVANEK 330
              L +  K DEA  L  +M+ KG+  + K
Sbjct: 586 ISGLSKAGKSDEAFGLYDEMKRKGYTIDNK 610

[Close]

BLAST of CmaCh11G011730 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-15
Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 205 EALQLFSEIKDKGHMPDVVAHTAVIEAYVNAGQSKEAHKVYLRMLASGVTPNAYTYTVLI 264
           EA +LF E+  KG  PD V  T +I  Y  AG  K+A +V+  M+ +G +PN  TYT LI
Sbjct: 404 EAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLI 463

Query: 265 KGLAADPKFVGDAKKFLLEMMGRGLRPNAGTYTAVFEALVRDAKVDEARELLVQMEAKGF 324
            GL  +   +  A + L EM   GL+PN  TY ++   L +   ++EA +L+ + EA G 
Sbjct: 464 DGLCKEGD-LDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 523

Query: 325 VAN 328
            A+
Sbjct: 524 NAD 525

The following BLAST results are available for this feature:

BLAST of CmaCh11G011730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL5	2.6e-27	34.47	Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana OX...	[more]
B8Y6I0	3.5e-16	38.89	Pentatricopeptide repeat-containing protein 10, chloroplastic OS=Zea mays OX=457...	[more]
Q8S8P6	1.0e-15	35.33	Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana OX...	[more]
Q0WVK7	1.5e-14	38.21	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop...	[more]
Q9LSL9	4.3e-14	35.88	Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmaCh11G011730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03560.2	7.8e-88	66.27	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G38150.1	1.8e-28	34.47	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G38150.2	1.8e-28	34.47	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G32630.1	7.2e-17	35.33	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G05670.1	1.0e-15	38.21	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 164..271 e-value: 1.2E-21 score: 78.9 coord: 272..340 e-value: 7.2E-10 score: 40.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 295..328 e-value: 2.0E-5 score: 22.5 coord: 223..257 e-value: 1.1E-6 score: 26.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 220..268 e-value: 1.3E-14 score: 54.1
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 197..217 e-value: 0.09 score: 13.1 coord: 295..324 e-value: 0.0043 score: 17.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 221..255 score: 11.257313
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 256..291 score: 9.97484
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 292..326 score: 10.194067
None	No IPR available	PANTHER	PTHR46128:SF173	SUBFAMILY NOT NAMED	coord: 108..338
None	No IPR available	PANTHER	PTHR46128	MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1	coord: 108..338

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G011730.1	CmaCh11G011730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding