Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon five_prime_UTR CDS polypeptide three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTCCATTTCTGTTCTTTTTCTCCTCCTTTTCATCGCTCCATTGCTTAACTTCTTCGATACTGTTTCA ATGGAGATGGAGGCAAAAATTTTGAGAACGGCCCCATCTATTCACTCGCTTCGATTACGTTCTCGTCCAAGATGTTCTTTGTTCGTCCATCGGATGCCCGCAACCAGTTCGAAGTATTGCTCGAGTGTGCTGAGATGCGGCCTTCGCCCTGTTCAAGCTTCTTCCGCTTCCACCGG GTATATACACGACAATCCTTTGACGAATCTTGTTGTTTGGTTCTTCTTTCTATGCCTACTACTTACTTTGCCGTCTGATTTGTTATGCTCGCCAAATTCTTGTGGTGTTGTCTTCAATTTGCTTCTTTTCGTTAGATGCAAATGCTCAAGTACAACTTTCCATTGTCGTTGGATGTTAGATTTTTGGATTTGGTGACATGGTAATTAGGAAAGGGAGGCGGTTGTTTTAGGCGACTGCTGTTTATGTATACAATTATAACACATATTCAGTCAACTCTTTGTGCTTCTATTAGGTTCTGAGCATATACATTCTAGATTGAATTACCAAATGTATCCTCTCAATTTTGATGGTCGTGTTTGTGTAGTTCTTAAATTTTAAAAAGGTTTCAATCAAGTTAATCAAGTTGCTTCACTTTGAATTTTGATTTTATGTAATGTGTTTTAACATCAAACAAAAGTAAGTGGAAAACTGGACAAAATAGAGTGGCACAACCAAAAAAAGAGTTTCAAAAAGTTGTTTCAAAAGGAGGTATGTTGTATGTGCCATTTTATTTTGTTCAACTATCCAATTTCTTCTTCTAATGCCATGAAAATTAGTTGTTTTTGTTATAAACATCTTATGTTATTTTTAAGTTAATGACAATCAATAATAGGACAATGTAGAATTTGGATGGAAGATAATAGGACTACGTTGAATTACAGTTCAAAGTTTGAGAGCATATTGAAACCTTTTAGAGTTTTAAGCCTCAGAAGCATAATAATGAAAGTTCATGATATAAACAATGTCCTGTGTTAAAGAACTTTGTTGCCCTTTGCATGACATTTGTTTACACAATCTTATGTTTTTAGGCATGGCCAAAGTCCATTAAAATTACGTCATCATATCTATTTTGTATGCCACTTGTCTAGAAAGGTTCCGCAAGGTGCTTGACAATACTTGTAAAAGAAAATGTTTTTAAAAGTAAGGCTATCTGGTCCATTTGAGGCGTCTCTATGATTTCCTCGACTTAGAGACCCTTGCTGCATTTTCTTACAAGCTAGAGAGTAATTCTTGTAGGTTGAAGGATCTAAAATCCCTTTGCTTTTCGTTCTTTTCCTCCTCAATTAATTGAAATTGGATTGCTGTAGACCACTAGCAAGGAAGAAACGGGTGGACATGAGTGAGACCTTGACCCTCGAGAGTATAAGATTTTCATTAATCATTCAGGAGGACAGCATAATATTCAATCTTATGGAGAGAGCACAGTATTGTTACAATGCCAATACTTATGACCGGGATGCTTTTGTTATGGATGGGTTTCATGGTTCTTTGGTAGAGTATATGGTCAAAGAAACTGAAAAGCTTCATGCTCAG GTATGCGAGAAGACAGAAACTTTAGTAAAAGTTAAGATGTAAAATAATGAGAGGAAGGTTTCATGTTCATCGGATTTTCTGCTTAACAACAATCTGTTTCATGCTAGGTGGGTAGATACAAAAGCCCTGATGAACATCCTTTTTTCCCAAATGACTTGCCGGAACCACTATTGCCTCCGATGCAGTATCCTCAG GTAAACTTAAACTCGCATTTGCTATTAAAATTGTTTGTCCTTAAAACATTTCCAAACAAATCTACATGTTTCGTTAGTCTATTCAATTTAGTAGCAGCCACCATTCAAAAAGTGGGGACCACATTCGCTTACGATCATGATCTCATTCTTCTTTCCTATTTTGAACACCTTCCCTCCATGGTACCCTTTTCTTTCAAAATGATGTGGTTGCCCCTATGGAAATTTAGAACTCAAAGTTGTGAAACAAAAGAATGCAACATTCTATTGACTTGATATAATATATTTCAAGATTCTAAATACATCTCAGAGGAAAAGCTCCCTAACCTTAATAATCAGAGAAGGGCAAGCCAGACCCTTAAGAGAAATTTGAAAATTGGTAACATATACTATTGCTGGTTTAATGATTCTCACATTGGCTATGTTGTCACAAAATCTTACTTATGATAAATAGCTGTGTTTCGTTAATAGTTTCATTGGTCCATCCTATTTCCACAATTCTAACTTCTCAAATTGAAATATTTGAACTCTTCTGCAACCATTTCCCCACAAAACCAGGCTAATTGTCTAGCCATGTATGTTATATATGGCCATGCCTCAGGGCATATTGATCGAGGTGGATTTTCTTTTTTCCTTCTTTTGATCAATCAAAGCCTGGAATCCTCTCTGGTAAATATCTTTTAAGGATGCTTGGAGTTATGCTCATCTTGAGTTGGTCTCCATAATACGTTCTACAGTATATTTCACTATGATTGAGCTTAAAAATAAAAAAGAAATCTTAGTATGTAACTGATAACATAACATCTGAGCAATGCTCTTGAAATCGGGCTCGATATTGTAAATGGTTCTGTTGCTCTGTTTTCTTATATGTCAACTACTTATGTGGCGAACAGGTACTACATCCAGTTGCAGATTCGATTAACATCAATCCAAAAGTATGGGACATGTACTTTAGGGATCTCATTCCTAGATTAGTGAAGGAAGGAGATGATGGGAATTGTGGATCAAGTGCTGTTTGCGACACATTGTGTTTGCAG GTGTGCCTTTCAACCAATCCATTTCATGAATCATGTTCTTGTTAAAGGAAAGGCTAAATTAATAAAAATACCTCTTAACGTTGCACTTTGTCTTGAACTTTCAAAAGTTTAAAGTTTTAATAATACCTTTAAACTTTCAAAAAGTCTAAAAAATAACCTTAAACTTTAAAACAAAGTTAAAAAATACCCTTACAGTTGGTTTTGGATGAAAACCGTTAATACTTTGTTTCAAAAATACTCTTGAACTTTTAAAAGTGTTTCAAAAATACCTTTTAACTTTAAAAAGTGTTCAAAAAGTGTCGTTTAGTTTTCAAAAGTTTCATTAATACCCTTAAACCTTTTTAAAAACTTTAAAAATACCTTTAAACTTTTTTTAAAAGTTCAAAAATACTCATCATAAATACCATGCTTCAAAATACTCCTAAGCTTTCAAAAGTAACATTAAAAGTTTGGAGACAATTTATGAGGTGTTGATGAACGGTTTCCATCCATATATTGACGGGAAGAACTTTTTCTGTTTTTTTTTATATAAAGGTGGTGTTAATGTTATTTTTAAAATTTTATGGGTGTTTTTTAAACAAAGTACTAACGACAAGAGTATTTTTTTAACTTTTTTTAAAAGTCGAAGGAAACGTTCTAAAGTTCAGGGGTATTTTTGAAATAAAGTACTAACGATTTCTATCCAAAATTAACGGCAAGAGTATCTTTTAGATTTTTTTGAAAGTGGTATTATTAAAACTTTTGAAAGTTTAGGGGCATTTTTTGAGACAAAGTGCAAGGTTTAGGAGTATTTTTCAATTAATTTAGCCTAAAATAAATATTAAGATAAAAATAAAAAAGAGGACAAACAACAAAAGAATTAGATAGCTAGCATAATAACAAATTTGTTGTCCTCTATGCGGCAATAATCTTGTATATTCCAGACTTTACAACATTGAGCCACGTTTCTTGTCTTCATATATGTTATGTGCTGCTCAGCTGTTGAAGTTATATCTCATTTCACTAACTTTACTCAAAATTTCAATATTAGATTTTTCCTGTATAAATGTGGCCTATGGTACATAAATCAGCATTTCAATTTTATGGGATGCCATCGAAGGGACTTACGGTCTCTATGTCATCCTCTAGACTTCGTTTGCAGTGTTTGAGTCGAGCCAATTTTAGGCGATTTTAGATTTCATCTGGGTTATGTTATTAAAAACCATCAGGTTAGTTGTTTTCAAGAAGCATTTCCTTTTTATTCCACTTTCTTTAGTTTGCTGGTCTTGCTGCTACCAGTTTAACGTGATCTGGATTCTTTTATTGGTTACTAGAAAATCGAAATCACCTAATCCTCTCTCGTTGTATTAGTTTACTTTACTGACTTAAAAATGGGAAGTCTAAGTCGAATATTGGGACAAGCACATTAATAAGAGACAAATATATCGATACTTAGGCCCCGTTAGATAACTATTTAATTTCTTTTTTTCTGCTTTAAATGTCGCAAAATTAAGTACACAAGATATTCACCGATTATGCATAAACATCACGTTGATCAACATGACAATCTCCAAGAATTGTATGAATGAATTCCTTGCTTTGGCAGGCTTTATCAAAGAGAATCCATTATGGAAAATTCGTAGCAGAAGCTAAGTTTCGAGCCTCACCGGAGGCGTATGAAGCAGCTATTAGAGCACAG GTAAACAAACTCAAACCAGATGGAACCCTCCAGCTGACTCTTTTCTGGATTTTCATTCATTAACTTTTTCCTTGTGTAAAATTTTCAAAGGATAAGCAAAAACTGATGGATATCTTGACATACCCGACGGTGGAGGAGGTTGTGAAAAGGCGAGTGGAGATGAAAGCAACGGTTTATGGACAAGAGGTAACGACCGATGCACCGAAAGCTGAATCCCGAGCAACTTATAAGATCAAACCCAGCTTGGTTGCTGATCTATATGGGGATTGGATCATGCCATTGACTAAGGAAGTTCAAGTTCAATATTTATTAAGAAGATTGGATTGA TGATCTTACTTAAATCTCCGAAGCCAAGTTGAAGCTGTGTTTGGTCTTGGAACTGCTGACTTGTTTTTGCAGCTAACTTAATTTGTGTCAGATGGTTTAGCACCAGATTTTCTAAGTTATCTGATCTTTTCAATGTCGGATACAAAAATGGGTGAATTAAAACGCCCTTTTGTAGATTTTATCACGATAAACTTTATTCATTTTTTAACTCGAATTAGAATAGAGGATTAGTGAACTTTCAACCTATTAAAAGAAGCTACCGATGAACAATGAACTACG mRNA sequence
CTTTCCATTTCTGTTCTTTTTCTCCTCCTTTTCATCGCTCCATTGCTTAACTTCTTCGATACTGTTTCAATGGAGATGGAGGCAAAAATTTTGAGAACGGCCCCATCTATTCACTCGCTTCGATTACGTTCTCGTCCAAGATGTTCTTTGTTCGTCCATCGGATGCCCGCAACCAGTTCGAAGTATTGCTCGAGTGTGCTGAGATGCGGCCTTCGCCCTGTTCAAGCTTCTTCCGCTTCCACCGGACCACTAGCAAGGAAGAAACGGGTGGACATGAGTGAGACCTTGACCCTCGAGAGTATAAGATTTTCATTAATCATTCAGGAGGACAGCATAATATTCAATCTTATGGAGAGAGCACAGTATTGTTACAATGCCAATACTTATGACCGGGATGCTTTTGTTATGGATGGGTTTCATGGTTCTTTGGTAGAGTATATGGTCAAAGAAACTGAAAAGCTTCATGCTCAGGTGGGTAGATACAAAAGCCCTGATGAACATCCTTTTTTCCCAAATGACTTGCCGGAACCACTATTGCCTCCGATGCAGTATCCTCAGGTACTACATCCAGTTGCAGATTCGATTAACATCAATCCAAAAGTATGGGACATGTACTTTAGGGATCTCATTCCTAGATTAGTGAAGGAAGGAGATGATGGGAATTGTGGATCAAGTGCTGTTTGCGACACATTGTGTTTGCAGGCTTTATCAAAGAGAATCCATTATGGAAAATTCGTAGCAGAAGCTAAGTTTCGAGCCTCACCGGAGGCGTATGAAGCAGCTATTAGAGCACAGGATAAGCAAAAACTGATGGATATCTTGACATACCCGACGGTGGAGGAGGTTGTGAAAAGGCGAGTGGAGATGAAAGCAACGGTTTATGGACAAGAGGTAACGACCGATGCACCGAAAGCTGAATCCCGAGCAACTTATAAGATCAAACCCAGCTTGGTTGCTGATCTATATGGGGATTGGATCATGCCATTGACTAAGGAAGTTCAAGTTCAATATTTATTAAGAAGATTGGATTGATGATCTTACTTAAATCTCCGAAGCCAAGTTGAAGCTGTGTTTGGTCTTGGAACTGCTGACTTGTTTTTGCAGCTAACTTAATTTGTGTCAGATGGTTTAGCACCAGATTTTCTAAGTTATCTGATCTTTTCAATGTCGGATACAAAAATGGGTGAATTAAAACGCCCTTTTGTAGATTTTATCACGATAAACTTTATTCATTTTTTAACTCGAATTAGAATAGAGGATTAGTGAACTTTCAACCTATTAAAAGAAGCTACCGATGAACAATGAACTACG Coding sequence (CDS)
ATGGAGATGGAGGCAAAAATTTTGAGAACGGCCCCATCTATTCACTCGCTTCGATTACGTTCTCGTCCAAGATGTTCTTTGTTCGTCCATCGGATGCCCGCAACCAGTTCGAAGTATTGCTCGAGTGTGCTGAGATGCGGCCTTCGCCCTGTTCAAGCTTCTTCCGCTTCCACCGGACCACTAGCAAGGAAGAAACGGGTGGACATGAGTGAGACCTTGACCCTCGAGAGTATAAGATTTTCATTAATCATTCAGGAGGACAGCATAATATTCAATCTTATGGAGAGAGCACAGTATTGTTACAATGCCAATACTTATGACCGGGATGCTTTTGTTATGGATGGGTTTCATGGTTCTTTGGTAGAGTATATGGTCAAAGAAACTGAAAAGCTTCATGCTCAGGTGGGTAGATACAAAAGCCCTGATGAACATCCTTTTTTCCCAAATGACTTGCCGGAACCACTATTGCCTCCGATGCAGTATCCTCAGGTACTACATCCAGTTGCAGATTCGATTAACATCAATCCAAAAGTATGGGACATGTACTTTAGGGATCTCATTCCTAGATTAGTGAAGGAAGGAGATGATGGGAATTGTGGATCAAGTGCTGTTTGCGACACATTGTGTTTGCAGGCTTTATCAAAGAGAATCCATTATGGAAAATTCGTAGCAGAAGCTAAGTTTCGAGCCTCACCGGAGGCGTATGAAGCAGCTATTAGAGCACAGGATAAGCAAAAACTGATGGATATCTTGACATACCCGACGGTGGAGGAGGTTGTGAAAAGGCGAGTGGAGATGAAAGCAACGGTTTATGGACAAGAGGTAACGACCGATGCACCGAAAGCTGAATCCCGAGCAACTTATAAGATCAAACCCAGCTTGGTTGCTGATCTATATGGGGATTGGATCATGCCATTGACTAAGGAAGTTCAAGTTCAATATTTATTAAGAAGATTGGATTGA Protein sequence
MEMEAKILRTAPSIHSLRLRSRPRCSLFVHRMPATSSKYCSSVLRCGLRPVQASSASTGPLARKKRVDMSETLTLESIRFSLIIQEDSIIFNLMERAQYCYNANTYDRDAFVMDGFHGSLVEYMVKETEKLHAQVGRYKSPDEHPFFPNDLPEPLLPPMQYPQVLHPVADSININPKVWDMYFRDLIPRLVKEGDDGNCGSSAVCDTLCLQALSKRIHYGKFVAEAKFRASPEAYEAAIRAQDKQKLMDILTYPTVEEVVKRRVEMKATVYGQEVTTDAPKAESRATYKIKPSLVADLYGDWIMPLTKEVQVQYLLRRLD
Homology
BLAST of CmaCh11G011580 vs. ExPASy Swiss-Prot
Match:
D2CSU4 (Chorismate mutase 1, chloroplastic OS=Petunia hybrida OX=4102 GN=CM1 PE=1 SV=1)
HSP 1 Score: 428.3 bits (1100), Expect = 7.5e-119
Identity = 208/280 (74.29%), Postives = 239/280 (85.36%), Query Frame = 0
Query: 41 SSVLRCGLRPVQASSASTGPLARKKRVDMSETLTLESIRFSLIIQEDSIIFNLMERAQYC 100 SS ++ G+RP+QAS+ S G L K RVD +E+ TL+ IR SLI QEDSIIF+L+ERAQYC Sbjct: 46 SSSIKHGIRPLQASATSLG-LGNKNRVDETESYTLDGIRHSLIRQEDSIIFSLVERAQYC 105 Query: 101 YNANTYDRDAFVMDGFHGSLVEYMVKETEKLHAQVGRYKSPDEHPFFPNDLPEPLLPPMQ 160 YNA TYD D F MDGFHGSLVEY+V+ETEKLHA VGRYKSPDEHPFFP LPEP+LPPMQ Sbjct: 106 YNAETYDPDVFAMDGFHGSLVEYIVRETEKLHATVGRYKSPDEHPFFPKVLPEPVLPPMQ 165 Query: 161 YPQVLHPVADSININPKVWDMYFRDLIPRLVKEGDDGNCGSSAVCDTLCLQALSKRIHYG 220 YP+VLHP+ADSININ K+W+MYF +L+PRLVKEGDDGN GS+AVCDT+C+QALSKRIHYG Sbjct: 166 YPKVLHPIADSININVKIWEMYFENLLPRLVKEGDDGNYGSTAVCDTICVQALSKRIHYG 225 Query: 221 KFVAEAKFRASPEAYEAAIRAQDKQKLMDILTYPTVEEVVKRRVEMKATVYGQEVTTDAP 280 KFVAEAK+RASPE Y AAIRAQD+ LMD+LTYP VEE +KRRVE+K YGQE+ + P Sbjct: 226 KFVAEAKYRASPEVYNAAIRAQDRNGLMDLLTYPAVEEAIKRRVEIKTRTYGQELHINGP 285 Query: 281 KAESRATYKIKPSLVADLYGDWIMPLTKEVQVQYLLRRLD 321 + YKIKPSLVA+LYGDWIMPLTKEVQVQYLLRRLD Sbjct: 286 ENGGDPVYKIKPSLVAELYGDWIMPLTKEVQVQYLLRRLD 324
BLAST of CmaCh11G011580 vs. ExPASy Swiss-Prot
Match:
P42738 (Chorismate mutase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CM1 PE=1 SV=3)
HSP 1 Score: 407.5 bits (1046), Expect = 1.4e-112
Identity = 208/303 (68.65%), Postives = 238/303 (78.55%), Query Frame = 0
Query: 32 MPATSSKY---CS----SVLRCGLRPVQASSASTGPLARKKRVDMSETLTLESIRFSLII 91 +P+T S + CS S R G V A G L KKRVD SE+LTLE IR SLI Sbjct: 38 LPSTKSSFSVRCSLPQPSKPRSGTSSVHAVMTLAGSLTGKKRVDESESLTLEGIRNSLIR 97 Query: 92 QEDSIIFNLMERAQYCYNANTYDRDAFVMDGFHGSLVEYMVKETEKLHAQVGRYKSPDEH 151 QEDSIIF L+ERA+YCYNA+TYD AF MDGF+GSLVEYMVK TEKLHA+VGR+KSPDEH Sbjct: 98 QEDSIIFGLLERAKYCYNADTYDPTAFDMDGFNGSLVEYMVKGTEKLHAKVGRFKSPDEH 157 Query: 152 PFFPNDLPEPLLPPMQYPQVLHPVADSININPKVWDMYFRDLIPRLVKEGDDGNCGSSAV 211 PFFP+DLPEP+LPP+QYP+VLH ADSININ K+W+MYFRDL+PRLVK+GDDGN GS+AV Sbjct: 158 PFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPRLVKKGDDGNYGSTAV 217 Query: 212 CDTLCLQALSKRIHYGKFVAEAKFRASPEAYEAAIRAQDKQKLMDILTYPTVEEVVKRRV 271 CD +CLQ LSKRIHYGKFVAEAKF+ASPEAYE+AI+AQDK LMD+LT+PTVE+ +K+RV Sbjct: 218 CDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLTFPTVEDAIKKRV 277 Query: 272 EMKATVYGQEVTTDAPKAESRA-------TYKIKPSLVADLYGDWIMPLTKEVQVQYLLR 321 EMK YGQEV + E YKI P LV DLYGDWIMPLTKEVQV+YLLR Sbjct: 278 EMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGDWIMPLTKEVQVEYLLR 337
BLAST of CmaCh11G011580 vs. ExPASy Swiss-Prot
Match:
Q9C544 (Chorismate mutase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CM3 PE=1 SV=1)
HSP 1 Score: 387.5 bits (994), Expect = 1.5e-106
Identity = 204/320 (63.75%), Postives = 252/320 (78.75%), Query Frame = 0
Query: 3 MEAKILRTAPSIHSLRLRSRPRCSLFVHRMPATSSKYCSSV-LRCGLRPVQASSASTGPL 62 MEAK+L+ P+ ++ + S + R+ + K S V L G ++ S+AS Sbjct: 1 MEAKLLK--PAFYNSPNLNLTNSSRLISRLSIWNDK--SKVGLSSGSLFLRLSAASPIRY 60 Query: 63 AR-KKRVDMSETLTLESIRFSLIIQEDSIIFNLMERAQYCYNANTYDRDAFVMDGFHGSL 122 +R RVD SE L LESIR SLI QEDSIIFNL+ERAQY YNA+TYD DAF M+GF GSL Sbjct: 61 SRGLLRVDESEYLKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYDEDAFTMEGFQGSL 120 Query: 123 VEYMVKETEKLHAQVGRYKSPDEHPFFPNDLPEPLLPPMQYPQVLHPVADSININPKVWD 182 VE+MV+ETEKLHA+V RYKSPDEHPFFP LPEP+LPP+QYPQVLH A+SININ KVW+ Sbjct: 121 VEFMVRETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKVWN 180 Query: 183 MYFRDLIPRLVKEGDDGNCGSSAVCDTLCLQALSKRIHYGKFVAEAKFRASPEAYEAAIR 242 MYF+ L+PRLVK GDDGNCGS+A+CDT+CLQ LSKRIH+GKFVAEAKFR +P AYE AI+ Sbjct: 181 MYFKHLLPRLVKPGDDGNCGSAALCDTMCLQILSKRIHFGKFVAEAKFRENPAAYETAIK 240 Query: 243 AQDKQKLMDILTYPTVEEVVKRRVEMKATVYGQEVTTDAPKAESRATYKIKPSLVADLYG 302 QD+ +LM +LTY TVEEVVK+RVE+KA ++GQ++T + P+ E+ +YKI+PSLVA LYG Sbjct: 241 EQDRTQLMQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLVAKLYG 300 Query: 303 DWIMPLTKEVQVQYLLRRLD 321 + IMPLTKEVQ++YLLRRLD Sbjct: 301 ERIMPLTKEVQIEYLLRRLD 316
BLAST of CmaCh11G011580 vs. ExPASy Swiss-Prot
Match:
B4FNK8 (Chorismate mutase 1, chloroplastic OS=Zea mays OX=4577 GN=CM1 PE=1 SV=1)
HSP 1 Score: 380.6 bits (976), Expect = 1.8e-104
Identity = 189/270 (70.00%), Postives = 221/270 (81.85%), Query Frame = 0
Query: 51 VQASSASTGPLARKKRVDMSETLTLESIRFSLIIQEDSIIFNLMERAQYCYNANTYDRDA 110 ++A++ S P+A+++RVD SE LTL+SIR LI EDSIIF L+ERAQ+CYNA+TYD +A Sbjct: 43 LRAANNSATPVAKEERVDRSEILTLDSIRQVLIRLEDSIIFGLLERAQFCYNADTYDSNA 102 Query: 111 FVMDGFHGSLVEYMVKETEKLHAQVGRYKSPDEHPFFPNDLPEPLLPPMQYPQVLHPVAD 170 F MDGF GSLVEYMV+ETEKLHAQVGRYKSPDEHPFFP DLPEP LPPMQYP+VLHP+AD Sbjct: 103 FHMDGFGGSLVEYMVRETEKLHAQVGRYKSPDEHPFFPEDLPEPRLPPMQYPRVLHPIAD 162 Query: 171 SININPKVWDMYFRDLIPRLVKEGDDGNCGSSAVCDTLCLQALSKRIHYGKFVAEAKFRA 230 SININ ++W MYF +L+PRLVK+G DGN GSSA+CDT CLQALSKRIHYGKFVAEAKF+ Sbjct: 163 SININKEIWKMYFDELLPRLVKKGSDGNAGSSALCDTTCLQALSKRIHYGKFVAEAKFQE 222 Query: 231 SPEAYEAAIRAQDKQKLMDILTYPTVEEVVKRRVEMKATVYGQEVTTDAPKAESRATYKI 290 SPEAY AI AQD+ +LM +LTY TVE ++ RVE KA ++GQEV S YKI Sbjct: 223 SPEAYMPAIIAQDRDQLMHLLTYETVERAIEHRVEAKAKIFGQEVNIGVEDNGSPPVYKI 282 Query: 291 KPSLVADLYGDWIMPLTKEVQVQYLLRRLD 321 PSLVA+LY IMPLTKEVQ+ YLLRRLD Sbjct: 283 VPSLVAELYSYRIMPLTKEVQIAYLLRRLD 312
BLAST of CmaCh11G011580 vs. ExPASy Swiss-Prot
Match:
Q9S7H4 (Chorismate mutase 2 OS=Arabidopsis thaliana OX=3702 GN=CM2 PE=1 SV=1)
HSP 1 Score: 269.2 bits (687), Expect = 5.8e-71
Identity = 131/252 (51.98%), Postives = 184/252 (73.02%), Query Frame = 0
Query: 70 SETLTLESIRFSLIIQEDSIIFNLMERAQYCYNANTYDRDAFVMDGFHGSLVEYMVKETE 129 S L+L+ IR SLI QED+I+F+L+ERA++ N+ ++ + G SL E+ V+ETE Sbjct: 14 SNVLSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFEESRCLDSGSFSSLTEFFVRETE 73 Query: 130 KLHAQVGRYKSPDEHPFFPNDLPEPLLPPMQYPQVLHPVADSININPKVWDMYFRDLIPR 189 + A+VGRY+ P+E+PFF ++P + P +YP LHP A S+NIN ++WD+YF++L+P Sbjct: 74 IIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQIWDIYFKELLPL 133 Query: 190 LVKEGDDGNCGSSAVCDTLCLQALSKRIHYGKFVAEAKFRASPEAYEAAIRAQDKQKLMD 249 VK GDDGN S+A D CLQALS+RIHYGKFVAE KFR +P+ YE AIRAQD++ LM Sbjct: 134 FVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVAEVKFRDAPQDYEPAIRAQDREALMK 193 Query: 250 ILTYPTVEEVVKRRVEMKATVYGQEVTTDAPKA-ESRATYKIKPSLVADLYGDWIMPLTK 309 +LT+ VEE+VK+RV+ KA +GQEV ++ ES+ YK+ P L + +YG+W++PLTK Sbjct: 194 LLTFEKVEEMVKKRVQKKAETFGQEVKFNSGYGDESKKKYKVDPLLASRIYGEWLIPLTK 253 Query: 310 EVQVQYLLRRLD 321 V+V+YLLRRLD Sbjct: 254 LVEVEYLLRRLD 265
BLAST of CmaCh11G011580 vs. TAIR 10
Match:
AT3G29200.1 (chorismate mutase 1 )
HSP 1 Score: 407.5 bits (1046), Expect = 9.7e-114
Identity = 208/303 (68.65%), Postives = 238/303 (78.55%), Query Frame = 0
Query: 32 MPATSSKY---CS----SVLRCGLRPVQASSASTGPLARKKRVDMSETLTLESIRFSLII 91 +P+T S + CS S R G V A G L KKRVD SE+LTLE IR SLI Sbjct: 38 LPSTKSSFSVRCSLPQPSKPRSGTSSVHAVMTLAGSLTGKKRVDESESLTLEGIRNSLIR 97 Query: 92 QEDSIIFNLMERAQYCYNANTYDRDAFVMDGFHGSLVEYMVKETEKLHAQVGRYKSPDEH 151 QEDSIIF L+ERA+YCYNA+TYD AF MDGF+GSLVEYMVK TEKLHA+VGR+KSPDEH Sbjct: 98 QEDSIIFGLLERAKYCYNADTYDPTAFDMDGFNGSLVEYMVKGTEKLHAKVGRFKSPDEH 157 Query: 152 PFFPNDLPEPLLPPMQYPQVLHPVADSININPKVWDMYFRDLIPRLVKEGDDGNCGSSAV 211 PFFP+DLPEP+LPP+QYP+VLH ADSININ K+W+MYFRDL+PRLVK+GDDGN GS+AV Sbjct: 158 PFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPRLVKKGDDGNYGSTAV 217 Query: 212 CDTLCLQALSKRIHYGKFVAEAKFRASPEAYEAAIRAQDKQKLMDILTYPTVEEVVKRRV 271 CD +CLQ LSKRIHYGKFVAEAKF+ASPEAYE+AI+AQDK LMD+LT+PTVE+ +K+RV Sbjct: 218 CDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLTFPTVEDAIKKRV 277 Query: 272 EMKATVYGQEVTTDAPKAESRA-------TYKIKPSLVADLYGDWIMPLTKEVQVQYLLR 321 EMK YGQEV + E YKI P LV DLYGDWIMPLTKEVQV+YLLR Sbjct: 278 EMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGDWIMPLTKEVQVEYLLR 337
BLAST of CmaCh11G011580 vs. TAIR 10
Match:
AT1G69370.1 (chorismate mutase 3 )
HSP 1 Score: 387.5 bits (994), Expect = 1.0e-107
Identity = 204/320 (63.75%), Postives = 252/320 (78.75%), Query Frame = 0
Query: 3 MEAKILRTAPSIHSLRLRSRPRCSLFVHRMPATSSKYCSSV-LRCGLRPVQASSASTGPL 62 MEAK+L+ P+ ++ + S + R+ + K S V L G ++ S+AS Sbjct: 1 MEAKLLK--PAFYNSPNLNLTNSSRLISRLSIWNDK--SKVGLSSGSLFLRLSAASPIRY 60 Query: 63 AR-KKRVDMSETLTLESIRFSLIIQEDSIIFNLMERAQYCYNANTYDRDAFVMDGFHGSL 122 +R RVD SE L LESIR SLI QEDSIIFNL+ERAQY YNA+TYD DAF M+GF GSL Sbjct: 61 SRGLLRVDESEYLKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYDEDAFTMEGFQGSL 120 Query: 123 VEYMVKETEKLHAQVGRYKSPDEHPFFPNDLPEPLLPPMQYPQVLHPVADSININPKVWD 182 VE+MV+ETEKLHA+V RYKSPDEHPFFP LPEP+LPP+QYPQVLH A+SININ KVW+ Sbjct: 121 VEFMVRETEKLHAKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKVWN 180 Query: 183 MYFRDLIPRLVKEGDDGNCGSSAVCDTLCLQALSKRIHYGKFVAEAKFRASPEAYEAAIR 242 MYF+ L+PRLVK GDDGNCGS+A+CDT+CLQ LSKRIH+GKFVAEAKFR +P AYE AI+ Sbjct: 181 MYFKHLLPRLVKPGDDGNCGSAALCDTMCLQILSKRIHFGKFVAEAKFRENPAAYETAIK 240 Query: 243 AQDKQKLMDILTYPTVEEVVKRRVEMKATVYGQEVTTDAPKAESRATYKIKPSLVADLYG 302 QD+ +LM +LTY TVEEVVK+RVE+KA ++GQ++T + P+ E+ +YKI+PSLVA LYG Sbjct: 241 EQDRTQLMQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSLVAKLYG 300 Query: 303 DWIMPLTKEVQVQYLLRRLD 321 + IMPLTKEVQ++YLLRRLD Sbjct: 301 ERIMPLTKEVQIEYLLRRLD 316
BLAST of CmaCh11G011580 vs. TAIR 10
Match:
AT5G10870.1 (chorismate mutase 2 )
HSP 1 Score: 269.2 bits (687), Expect = 4.1e-72
Identity = 131/252 (51.98%), Postives = 184/252 (73.02%), Query Frame = 0
Query: 70 SETLTLESIRFSLIIQEDSIIFNLMERAQYCYNANTYDRDAFVMDGFHGSLVEYMVKETE 129 S L+L+ IR SLI QED+I+F+L+ERA++ N+ ++ + G SL E+ V+ETE Sbjct: 14 SNVLSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFEESRCLDSGSFSSLTEFFVRETE 73 Query: 130 KLHAQVGRYKSPDEHPFFPNDLPEPLLPPMQYPQVLHPVADSININPKVWDMYFRDLIPR 189 + A+VGRY+ P+E+PFF ++P + P +YP LHP A S+NIN ++WD+YF++L+P Sbjct: 74 IIQAKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQIWDIYFKELLPL 133 Query: 190 LVKEGDDGNCGSSAVCDTLCLQALSKRIHYGKFVAEAKFRASPEAYEAAIRAQDKQKLMD 249 VK GDDGN S+A D CLQALS+RIHYGKFVAE KFR +P+ YE AIRAQD++ LM Sbjct: 134 FVKPGDDGNYPSTAASDLACLQALSRRIHYGKFVAEVKFRDAPQDYEPAIRAQDREALMK 193 Query: 250 ILTYPTVEEVVKRRVEMKATVYGQEVTTDAPKA-ESRATYKIKPSLVADLYGDWIMPLTK 309 +LT+ VEE+VK+RV+ KA +GQEV ++ ES+ YK+ P L + +YG+W++PLTK Sbjct: 194 LLTFEKVEEMVKKRVQKKAETFGQEVKFNSGYGDESKKKYKVDPLLASRIYGEWLIPLTK 253 Query: 310 EVQVQYLLRRLD 321 V+V+YLLRRLD Sbjct: 254 LVEVEYLLRRLD 265
The following BLAST results are available for this feature:
Match Name E-value Identity Description
D2CSU4 7.5e-119 74.29 Chorismate mutase 1, chloroplastic OS=Petunia hybrida OX=4102 GN=CM1 PE=1 SV=1 [more]
P42738 1.4e-112 68.65 Chorismate mutase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CM1 PE=1 S... [more]
Q9C544 1.5e-106 63.75 Chorismate mutase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CM3 PE=1 S... [more]
B4FNK8 1.8e-104 70.00 Chorismate mutase 1, chloroplastic OS=Zea mays OX=4577 GN=CM1 PE=1 SV=1 [more]
Q9S7H4 5.8e-71 51.98 Chorismate mutase 2 OS=Arabidopsis thaliana OX=3702 GN=CM2 PE=1 SV=1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
C T T T C C A T T T C T G T T C T T T T T C T C C T C C T T T T C A T C G C T C C A T T G C T T A A C T T C T T C G A T A C T G T T T C A A T G G A G A T G G A G G C A A A A A T T T T G A G A A C G G C C C C A T C T A T T C A C T C G C T T C G A T T A C G T T C T C G T C C A A G A T G T T C T T T G T T C G T C C A T C G G A T G C C C G C A A C C A G T T C G A A G T A T T G C T C G A G T G T G C T G A G A T G C G G C C T T C G C C C T G T T C A A G C T T C T T C C G C T T C C A C C G G A C C A C T A G C A A G G A A G A A A C G G G T G G A C A T G A G T G A G A C C T T G A C C C T C G A G A G T A T A A G A T T T T C A T T A A T C A T T C A G G A G G A C A G C A T A A T A T T C A A T C T T A T G G A G A G A G C A C A G T A T T G T T A C A A T G C C A A T A C T T A T G A C C G G G A T G C T T T T G T T A T G G A T G G G T T T C A T G G T T C T T T G G T A G A G T A T A T G G T C A A A G A A A C T G A A A A G C T T C A T G C T C A G G T G G G T A G A T A C A A A A G C C C T G A T G A A C A T C C T T T T T T C C C A A A T G A C T T G C C G G A A C C A C T A T T G C C T C C G A T G C A G T A T C C T C A G G T A C T A C A T C C A G T T G C A G A T T C G A T T A A C A T C A A T C C A A A A G T A T G G G A C A T G T A C T T T A G G G A T C T C A T T C C T A G A T T A G T G A A G G A A G G A G A T G A T G G G A A T T G T G G A T C A A G T G C T G T T T G C G A C A C A T T G T G T T T G C A G G C T T T A T C A A A G A G A A T C C A T T A T G G A A A A T T C G T A G C A G A A G C T A A G T T T C G A G C C T C A C C G G A G G C G T A T G A A G C A G C T A T T A G A G C A C A G G A T A A G C A A A A A C T G A T G G A T A T C T T G A C A T A C C C G A C G G T G G A G G A G G T T G T G A A A A G G C G A G T G G A G A T G A A A G C A A C G G T T T A T G G A C A A G A G G T A A C G A C C G A T G C A C C G A A A G C T G A A T C C C G A G C A A C T T A T A A G A T C A A A C C C A G C T T G G T T G C T G A T C T A T A T G G G G A T T G G A T C A T G C C A T T G A C T A A G G A A G T T C A A G T T C A A T A T T T A T T A A G A A G A T T G G A T T G A T G A T C T T A C T T A A A T C T C C G A A G C C A A G T T G A A G C T G T G T T T G G T C T T G G A A C T G C T G A C T T G T T T T T G C A G C T A A C T T A A T T T G T G T C A G A T G G T T T A G C A C C A G A T T T T C T A A G T T A T C T G A T C T T T T C A A T G T C G G A T A C A A A A A T G G G T G A A T T A A A A C G C C C T T T T G T A G A T T T T A T C A C G A T A A A C T T T A T T C A T T T T T T A A C T C G A A T T A G A A T A G A G G A T T A G T G A A C T T T C A A C C T A T T A A A A G A A G C T A C C G A T G A A C A A T G A A C T A C G 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 Expect = 1.2E-125 / Score = 416.1 Expect = 8.2E-107 / Score = 354.4 Score = Score = 93.03595 Expect = 3.0E-123 / Score = 412.1 Score = Score = Sequence PIRSF017318 TIGR01802 PTHR21145 PS51169 G3DSA:1.10.590.10 PTHR21145:SF0 SSF48600
IPR Term IPR Description Source Source Term Source Description Alignment
IPR008238 Chorismate mutase, AroQ class, eukaryotic type PIRSF PIRSF017318 Chor_mut_AroQ_eu coord: 61..320 e-value: 1.2E-125 score: 416.1
IPR008238 Chorismate mutase, AroQ class, eukaryotic type TIGRFAM TIGR01802 TIGR01802 coord: 73..320 e-value: 8.2E-107 score: 354.4
IPR008238 Chorismate mutase, AroQ class, eukaryotic type PANTHER PTHR21145 CHORISMATE MUTASE coord: 30..320
IPR008238 Chorismate mutase, AroQ class, eukaryotic type PROSITE PS51169 CHORISMATE_MUT_3 coord: 66..320 score: 93.03595
IPR037039 Chorismate mutase, AroQ class superfamily, eukaryotic GENE3D 1.10.590.10 Chorismate mutase, AroQ class superfamily, eukaryotic coord: 66..320 e-value: 3.0E-123 score: 412.1
None No IPR available PANTHER PTHR21145:SF0 CHORISMATE MUTASE 1, CHLOROPLASTIC coord: 30..320
IPR036263 Chorismate mutase type II superfamily SUPERFAMILY 48600 Chorismate mutase II coord: 66..320
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0009073
aromatic amino acid family biosynthetic process
biological_process
GO:0008652
cellular amino acid biosynthetic process
biological_process
GO:0046417
chorismate metabolic process
cellular_component
GO:0005737
cytoplasm
molecular_function
GO:0004106
chorismate mutase activity