Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon five_prime_UTR CDS polypeptide three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGGTTAAAGCGTTTTCTCTGTCTCTCCCTCGCTCAAGATTGCAGTTTTTGGAATTTATTCGTCGTGCTGTGGAAGGGGGAATCTCAGAGGCGGATAGTCAGAG ATGTTGGACATCAATTTGTTCAGGGAAGAGAAGGGCAACAATCCTGAAATCATTCGCGAGTCTCAACGCCGCCGATTTGCCAGCGTTGAACTCGTTGATGAAGTAATTAAGCTTGACAAGGAATGGCGTCAAC GTAATCCCCTCAATCTTTTCCATCGCTTTCATTTCTACCGTTATTTGTTACTTTTTCTTATTTTTCTTTTTGGAATTCGATTTTGTTTAGGCCAATTTGAGCTTGAGAATCTCAGGAAGGAGTTCAATAAGATTAACAAGCAAATTGCTCAGCTCAGAATA GTAACGCATCTATCTTTTTTCTTCAAAGCTATTTGTGCTTTCTTTTCTGCGGGTTTAGATTCCACATCTAATCTTCTCTATATTGGTTGCATGACAAATTAGATTTGGAACTAGCATTAATTTGAAAGTCTAGGACATTGTCAGTTTCCGATTTGGGGATTTAATACGTTCCATTATTTACTTTGAAAATTTTGGGAATGAAGGCTGGTGAGGATGCGTCGGAGAAGATTAAAGACACTGAAGAAAACAAAAAGTTGTCTGCAGAGAAAGACGTTGAAGCTAAGGACGTGTTAAAACAGTTGAATTCAAAATTGGAAATAATTGGAAACCTTGTGCACGATTCCGTTCCCGTCAGCAATGATGAG GTGTGGTATTTGGGATATCTGCCTTTGTTCTATTCTTAGTAGCGCCATCCTTTTTTTTTTTTTTTTTTTTTTTTGTTTAAATTTTTAATATTGTACTTAGCGACATTTTGTAGGCTAATAATGCTGTAATCAGATCGTGGGGTGAGAAACTGGTAAAACCAAAACTAAAGAATCATGTTGATCTTGTTGAGCTTCTTGGAATTGCAGATAGCAAAAAAG GTATTGAAATTTACAGGCTTCTATGAATACAAGATTCAGCCTTTTATGTCTTCTATTAATTTTTCTGTGGCATTAGGTGTTTGATCTTATGGTCTTCATTCAAATCTATATTAACTGAAATCTCAGAGTAACAAGAGTCATATGCTATCTGCATTATATATGTTTCAAGTTAACCATCTAGTCTGACAAGCTTTAGATTTAGGATGTTGGTTCAGCTGTAATCCTTTTCCAGAACATTTGTTTCTTCATACTTCGTGGAATCTTTTGTTTGCCCCCTCTTGTTTTCCCTTCTCCATATCCATATGAAATTTCTTTTATTTTCTCTTTTGTTGGGTCACTTATTTAATAAAGAACAAGGAGATGTTATTTTGCCGACTATTAGAGCCTTTTTTGGGACATTATAATCAAATGGAACAACCACACTTTCAATGAAATTTATCTCTTTTGATAGTTTCAGAGATACGGTTCTTATACATGCTCTAAGTTGGTTTTATTTTTACTCTGGTTACAAATTACAGATTGAATAGACAGAATTATCTTTTAGTTAATTGGAAGGATTTTATGTAGCTTTTTTCAGCTCTAGATGTTCACTTTTATGCTAATTCCAACTTGATGGAAATATGTAGGTTCTGAAATAGCAGGTGGTAGAGGCTACTACCTCAAAGGAGATGGTGTGCGTTTGAACCAAGCTTTGATCAATTATGGCCTCGACTTTTTAGAGAAAAGGGGTTACACAGCAATGCAGACTCCTTTCTTCATGAGAAAAGATATCATGGCTAGATGTGCTCAACTAGCACAATTTGATGAAGAACTTTATAAA GTCTGTTATTACCCTCATCTTGTTTCCATGGAATTTTAAGGAATTTTAAATTCTAATGAATTTGAAATGAATCCCTTATTTCTTGAAATTAAATCTTGATTTAAAATCCTGTTTCTCAAGAATTTTAACACGAAGGATTTTACAGGATTTCAATGTCAATTGCCAATTATGAATTTTCTTTTTCATTTTATTAACACTTGAACAAACGAATTCAAATTCATTTCAAATCATTCTCATATTAAACCACAACAATTTTAAAATCATTTCTAGTTTCTCATATCATGTGATATAAAATCATTTCTTATATGTTTTTTTTTATTCCAAACATAACCATACTGATTTCCTTCTTTGGTAGTACAGTGTTTAACTGTATTTCAGAACAAATTAGCAGTACAGTTTTTTGCTTTGTTGGCCTGTGAAAACGTGACAAAATGTGACTGAATTAATTGATGTTAATTAGGTTACTGGTGAGGGGGATGATAAGTATCTAATTGCCACTGCTGAACAACCAATTTGTTCATATCATCTTGAAGATTGGATTCATCCTTCCCAGTTGCCTATAAG GTTCTTACGTCTCATTGAAAGCCTGTCCACCCTCTGACACCGTAAGAATGCATTTTTTTAAAAAATAAAATTTACCATTGTTTATGATCTACACAGATATGCTGGGTATTCAACTTGCTTCCGCAAAGAAGCGGGTTCCCATGGTCGAGATACTCTTGGAATTTTCCGAGTCCACCAATTCGAGAAAATAGAGCAATTTTGTGTCACCAGCCCAAATGGCAATGATTCGTGGGACATGCATGAAGAGATGATTAAGAATTCTGAGGACTTCTACAAGACG GTATCTAACTTCTATTCCTTATGTTAGTGATTTCTTTTTTACATAATTACAATTTCCATGTTTGCAAGCTGGTTTATTTGGCTATTTTGTGAAACATTTGCTTAAACGAGAAATATTGTTATTTTTAGAGGAGTCGAGAGATCTTAGGAAGAGGTTAGTTATATATTCTGTCTGATGTGAAATCCAATGTTTTGGCAGTTAAATCTCCCATACCAAGTTGTGGCTATAGTTTCTGGTGCATTAAATGATGCGGCTGCCAAGAAATACGATCTGGAAGCATGGTTTCCTGCATCCCATACTTACAGGGAGTTAGTATCCTGTTCAAATTGCACTGATTATCAGTCCAGAAGATTAGAGACCCGATTTGGTCAGAAAAAG GTTAGTTCATTTCTTACTTCTAAATTATTGGAGGGTTTATTTCTGTCATTAAAATTAAACCCGGTGGTACTAACGTTTTAATAGGCTTCTAATAGGGAGGAATTGATTCTTATAGCTAATTACGTCTGTGACTATGATTCTTTTTGTTCGGTTTTTTTAATGCTTTTGTACATTCAGTTTCCCATTTTTACAAAGTATATGATTCTGACATTCTTGCAAGTTGAGTTTAGTATTGAATTTTCAGGTCCTGCGTCCATTCTTTGTGTTTCATCAAGTTTTTTATTGTTTTAAAAAGTTAAAAGGAGTTTAAACATTTGACTTGTCTCTTTTAGTCCTTATATCTTCAAAAGATTCTGATATGCCCTTTGAGTTTTTAATTCTGTATTTAATAACTCTCTATAACTTTAATGCCTATGCCACACAGTAACTGTTCTGATTTAAGTTTTAATGCTGAGGCCACACAATATCTAAACCAGCCTAAAATCAACTCGCCACTAAACACTTAGATATTACAGTCAACGTGCCTCATATGCACGAAATTGACTGTTTTAACATCAGTGACCTATTAGTGATCCATTAGACACAAAATGAGAGTAACTTGGTAGAGAAAACTATTAGAAACCTTTTCAATTACAAGAATTAGATAGATCCAACCTTGGAAGTTGAGGGATTAACGATGAACATTGTAAAAGCACATAGACGACAGACAACATTGAGATCTCTTAAAAGTATACAAACTACATGGATGCAATCTTACGAGTGCAAGGAAGAAACCAATAATCTTTCTTTTCCTTTCCAATATTTGCAGAGCAACGAGCAGACAAAGCAATATGTGCACATGCTGAATTCCACGCTCACAGCAACAGAAAGGACTTTGTGCTGCATTCTTGAGAACTACCAGAAAGAAGATGGGGTGGAAATACCAGAAGTTCTACAACCATTTATGGGTGGAAAAACTTTTATGCCCTTCAAGGCGAAACCAACAACAAGCGATGCCAAAGGGAAGAAATCGAAGGCCTGA TTGCATAATTTTCTTCTCTCCCATTTGATTTATAAAATTTCTGACTCAAGGAAAGGATATATTACTCACAGTATTGTTGGAACTTCAAATTATCTTTTTGGTGGGTATGAAGTTATCACGACACTAGTAACAGATGGCTGTTCTTATTTATATGCTTCAATT GTGGGTACTCTCTCTATAAAAGAGTTAGATTGAATTTTCTGATTTAGAGAAGCTTGGCATTCGTTTCTGAGATTGACTTGGGTTCTTAATTGATTTTATTTAGACTGAAACGAGTGTTTTCGAAGCTAATTTGAGAGCGAATATGTTCGGATTCTAAACCAATTTTCTTGGGCTTTTGCAGGGCTGCCAATCGTTTTCATCAACCCTGTCAAGCAAGCCCAAAGCTGACCCCAATAATGAAATTCATGGACCACTCCAACTTGGTCTGGAAACTCTTATTTAGAAAATTCAGATTGTTAGGTTTGAGATGAGATATTGCCATTGAACGCTGTTTTGGTATAATTTATAGCTATCATTTTTATAATCGTTAGATGCATGGGGAGCGTTTTCAATAGTTTTCTGGGGAAAAAACTGAAGTCAACAAGAAAGAAGAGATTGATTTATGCATGTTTACCATCATTTTGGAGTTTATGTTCTTTGGCAAATCTGATTATTGTTAGTTTGATTTAATTTCCCTTCTGTATTGAATTTGAGTTCACTCGCCCCATTTTCATGAACCACATCACCAAC mRNA sequence
GCAGGTTAAAGCGTTTTCTCTGTCTCTCCCTCGCTCAAGATTGCAGTTTTTGGAATTTATTCGTCGTGCTGTGGAAGGGGGAATCTCAGAGGCGGATAGTCAGAGATGTTGGACATCAATTTGTTCAGGGAAGAGAAGGGCAACAATCCTGAAATCATTCGCGAGTCTCAACGCCGCCGATTTGCCAGCGTTGAACTCGTTGATGAAGTAATTAAGCTTGACAAGGAATGGCGTCAACGCCAATTTGAGCTTGAGAATCTCAGGAAGGAGTTCAATAAGATTAACAAGCAAATTGCTCAGCTCAGAATAGCTGGTGAGGATGCGTCGGAGAAGATTAAAGACACTGAAGAAAACAAAAAGTTGTCTGCAGAGAAAGACGTTGAAGCTAAGGACGTGTTAAAACAGTTGAATTCAAAATTGGAAATAATTGGAAACCTTGTGCACGATTCCGTTCCCGTCAGCAATGATGAGGCTAATAATGCTGTAATCAGATCGTGGGGTGAGAAACTGGTAAAACCAAAACTAAAGAATCATGTTGATCTTGTTGAGCTTCTTGGAATTGCAGATAGCAAAAAAGGTTCTGAAATAGCAGGTGGTAGAGGCTACTACCTCAAAGGAGATGGTGTGCGTTTGAACCAAGCTTTGATCAATTATGGCCTCGACTTTTTAGAGAAAAGGGGTTACACAGCAATGCAGACTCCTTTCTTCATGAGAAAAGATATCATGGCTAGATGTGCTCAACTAGCACAATTTGATGAAGAACTTTATAAAGTTACTGGTGAGGGGGATGATAAGTATCTAATTGCCACTGCTGAACAACCAATTTGTTCATATCATCTTGAAGATTGGATTCATCCTTCCCAGTTGCCTATAAGATATGCTGGGTATTCAACTTGCTTCCGCAAAGAAGCGGGTTCCCATGGTCGAGATACTCTTGGAATTTTCCGAGTCCACCAATTCGAGAAAATAGAGCAATTTTGTGTCACCAGCCCAAATGGCAATGATTCGTGGGACATGCATGAAGAGATGATTAAGAATTCTGAGGACTTCTACAAGACGTTAAATCTCCCATACCAAGTTGTGGCTATAGTTTCTGGTGCATTAAATGATGCGGCTGCCAAGAAATACGATCTGGAAGCATGGTTTCCTGCATCCCATACTTACAGGGAGTTAGTATCCTGTTCAAATTGCACTGATTATCAGTCCAGAAGATTAGAGACCCGATTTGGTCAGAAAAAGAGCAACGAGCAGACAAAGCAATATGTGCACATGCTGAATTCCACGCTCACAGCAACAGAAAGGACTTTGTGCTGCATTCTTGAGAACTACCAGAAAGAAGATGGGGTGGAAATACCAGAAGTTCTACAACCATTTATGGGTGGAAAAACTTTTATGCCCTTCAAGGCGAAACCAACAACAAGCGATGCCAAAGGGAAGAAATCGAAGGCCTGATTGCATAATTTTCTTCTCTCCCATTTGATTTATAAAATTTCTGACTCAAGGAAAGGATATATTACTCACAGTATTGTTGGAACTTCAAATTATCTTTTTGGTGGGTATGAAGTTATCACGACACTAGTAACAGATGGCTGTTCTTATTTATATGCTTCAATTGGCTGCCAATCGTTTTCATCAACCCTGTCAAGCAAGCCCAAAGCTGACCCCAATAATGAAATTCATGGACCACTCCAACTTGGTCTGGAAACTCTTATTTAGAAAATTCAGATTGTTAGGTTTGAGATGAGATATTGCCATTGAACGCTGTTTTGGTATAATTTATAGCTATCATTTTTATAATCGTTAGATGCATGGGGAGCGTTTTCAATAGTTTTCTGGGGAAAAAACTGAAGTCAACAAGAAAGAAGAGATTGATTTATGCATGTTTACCATCATTTTGGAGTTTATGTTCTTTGGCAAATCTGATTATTGTTAGTTTGATTTAATTTCCCTTCTGTATTGAATTTGAGTTCACTCGCCCCATTTTCATGAACCACATCACCAAC Coding sequence (CDS)
ATGTTGGACATCAATTTGTTCAGGGAAGAGAAGGGCAACAATCCTGAAATCATTCGCGAGTCTCAACGCCGCCGATTTGCCAGCGTTGAACTCGTTGATGAAGTAATTAAGCTTGACAAGGAATGGCGTCAACGCCAATTTGAGCTTGAGAATCTCAGGAAGGAGTTCAATAAGATTAACAAGCAAATTGCTCAGCTCAGAATAGCTGGTGAGGATGCGTCGGAGAAGATTAAAGACACTGAAGAAAACAAAAAGTTGTCTGCAGAGAAAGACGTTGAAGCTAAGGACGTGTTAAAACAGTTGAATTCAAAATTGGAAATAATTGGAAACCTTGTGCACGATTCCGTTCCCGTCAGCAATGATGAGGCTAATAATGCTGTAATCAGATCGTGGGGTGAGAAACTGGTAAAACCAAAACTAAAGAATCATGTTGATCTTGTTGAGCTTCTTGGAATTGCAGATAGCAAAAAAGGTTCTGAAATAGCAGGTGGTAGAGGCTACTACCTCAAAGGAGATGGTGTGCGTTTGAACCAAGCTTTGATCAATTATGGCCTCGACTTTTTAGAGAAAAGGGGTTACACAGCAATGCAGACTCCTTTCTTCATGAGAAAAGATATCATGGCTAGATGTGCTCAACTAGCACAATTTGATGAAGAACTTTATAAAGTTACTGGTGAGGGGGATGATAAGTATCTAATTGCCACTGCTGAACAACCAATTTGTTCATATCATCTTGAAGATTGGATTCATCCTTCCCAGTTGCCTATAAGATATGCTGGGTATTCAACTTGCTTCCGCAAAGAAGCGGGTTCCCATGGTCGAGATACTCTTGGAATTTTCCGAGTCCACCAATTCGAGAAAATAGAGCAATTTTGTGTCACCAGCCCAAATGGCAATGATTCGTGGGACATGCATGAAGAGATGATTAAGAATTCTGAGGACTTCTACAAGACGTTAAATCTCCCATACCAAGTTGTGGCTATAGTTTCTGGTGCATTAAATGATGCGGCTGCCAAGAAATACGATCTGGAAGCATGGTTTCCTGCATCCCATACTTACAGGGAGTTAGTATCCTGTTCAAATTGCACTGATTATCAGTCCAGAAGATTAGAGACCCGATTTGGTCAGAAAAAGAGCAACGAGCAGACAAAGCAATATGTGCACATGCTGAATTCCACGCTCACAGCAACAGAAAGGACTTTGTGCTGCATTCTTGAGAACTACCAGAAAGAAGATGGGGTGGAAATACCAGAAGTTCTACAACCATTTATGGGTGGAAAAACTTTTATGCCCTTCAAGGCGAAACCAACAACAAGCGATGCCAAAGGGAAGAAATCGAAGGCCTGA Protein sequence
MLDINLFREEKGNNPEIIRESQRRRFASVELVDEVIKLDKEWRQRQFELENLRKEFNKINKQIAQLRIAGEDASEKIKDTEENKKLSAEKDVEAKDVLKQLNSKLEIIGNLVHDSVPVSNDEANNAVIRSWGEKLVKPKLKNHVDLVELLGIADSKKGSEIAGGRGYYLKGDGVRLNQALINYGLDFLEKRGYTAMQTPFFMRKDIMARCAQLAQFDEELYKVTGEGDDKYLIATAEQPICSYHLEDWIHPSQLPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKIEQFCVTSPNGNDSWDMHEEMIKNSEDFYKTLNLPYQVVAIVSGALNDAAAKKYDLEAWFPASHTYRELVSCSNCTDYQSRRLETRFGQKKSNEQTKQYVHMLNSTLTATERTLCCILENYQKEDGVEIPEVLQPFMGGKTFMPFKAKPTTSDAKGKKSKA
Homology
BLAST of CmaCh11G011280 vs. ExPASy Swiss-Prot
Match:
Q39230 (Serine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At5g27470 PE=1 SV=1)
HSP 1 Score: 739.6 bits (1908), Expect = 2.1e-212
Identity = 353/451 (78.27%), Postives = 408/451 (90.47%), Query Frame = 0
Query: 1 MLDINLFREEKGNNPEIIRESQRRRFASVELVDEVIKLDKEWRQRQFELENLRKEFNKIN 60 MLDINLFREEKGNNPEIIRESQRRRFASVE+VDE+IKLDKEWRQRQFE+++ RKEFNK+N Sbjct: 1 MLDINLFREEKGNNPEIIRESQRRRFASVEIVDEIIKLDKEWRQRQFEVDSFRKEFNKLN 60 Query: 61 KQIAQLRIAGEDASEKIKDTEENKKLSAEKDVEAKDVLKQLNSKLEIIGNLVHDSVPVSN 120 KQ+AQL+I EDASE I+ TE+NK+ S K+ E ++ L +KLE +GNLVHDSVPV Sbjct: 61 KQVAQLKIKKEDASEIIQQTEKNKQDSTAKEAEVREAYAALKAKLEQVGNLVHDSVPVDK 120 Query: 121 DEANNAVIRSWGEKLVKP---KLKNHVDLVELLGIADSKKGSEIAGGRGYYLKGDGVRLN 180 DEANN VI+ WGEK KLKNHVDLVELLGIAD+K+G+EIAG RG++LKGDG+ LN Sbjct: 121 DEANNLVIKLWGEKRFSTPGLKLKNHVDLVELLGIADTKRGAEIAGARGFFLKGDGLMLN 180 Query: 181 QALINYGLDFLEKRGYTAMQTPFFMRKDIMARCAQLAQFDEELYKVTGEGDDKYLIATAE 240 QALIN+GL FL+KRG+T +Q PFFMRKD+MA+CAQLAQFDEELYKVTGEGDDKYLIATAE Sbjct: 181 QALINFGLTFLKKRGFTGLQPPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATAE 240 Query: 241 QPICSYHLEDWIHPSQLPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKIEQFCVTSPN 300 QP+C+YH+++WIHP++LP+RYAGYS+CFRKEAGSHGRDTLGIFRVHQFEKIEQFC+T PN Sbjct: 241 QPLCAYHIDEWIHPTELPLRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKIEQFCITGPN 300 Query: 301 GNDSWDMHEEMIKNSEDFYKTLNLPYQVVAIVSGALNDAAAKKYDLEAWFPASHTYRELV 360 N SW+M +EM+KNSEDFY+ L LPYQ+V+IVSGALNDAAAKKYDLEAWFP+S T+RELV Sbjct: 301 ENASWEMLDEMMKNSEDFYQALKLPYQIVSIVSGALNDAAAKKYDLEAWFPSSETFRELV 360 Query: 361 SCSNCTDYQSRRLETRFGQKKSNEQTKQYVHMLNSTLTATERTLCCILENYQKEDGVEIP 420 SCSNCTDYQ+RRLE R+GQKKSNEQTKQYVHMLNSTLTATERT+CCILENYQ+EDGV+IP Sbjct: 361 SCSNCTDYQARRLEIRYGQKKSNEQTKQYVHMLNSTLTATERTICCILENYQREDGVDIP 420 Query: 421 EVLQPFMGGKTFMPFKAKPTTSDAKGKKSKA 449 EVLQPFMGG+TF+PFKAKP +D KGKKSKA Sbjct: 421 EVLQPFMGGETFLPFKAKPVVADTKGKKSKA 451
BLAST of CmaCh11G011280 vs. ExPASy Swiss-Prot
Match:
O81983 (Serine--tRNA ligase OS=Helianthus annuus OX=4232 PE=2 SV=1)
HSP 1 Score: 733.0 bits (1891), Expect = 2.0e-210
Identity = 351/435 (80.69%), Postives = 395/435 (90.80%), Query Frame = 0
Query: 1 MLDINLFREEKGNNPEIIRESQRRRFASVELVDEVIKLDKEWRQRQFELENLRKEFNKIN 60 MLDINLFREEKG NPEI+RESQRRR ASVE+VDE+IKLDKEWRQRQFELE LRK+FN+IN Sbjct: 1 MLDINLFREEKGGNPEIVRESQRRRGASVEIVDEIIKLDKEWRQRQFELEQLRKDFNRIN 60 Query: 61 KQIAQLRIAGEDASEKIKDTEENKKLSAEKDVEAKDVLKQLNSKLEIIGNLVHDSVPVSN 120 K++A+LRI+G DAS IK+TEENK +A+K E ++ L SKLE +GNLVHDSVPVSN Sbjct: 61 KEVAKLRISGGDASSLIKNTEENKDSTAKKQAEVQEARTALYSKLETVGNLVHDSVPVSN 120 Query: 121 DEANNAVIRSWGEKLVKPKLKNHVDLVELLGIADSKKGSEIAGGRGYYLKGDGVRLNQAL 180 DEA+NAV+R+WGE+ + LKNHV+LVELLGIAD KKG+ +AGGRGYYLKGDGVRLNQAL Sbjct: 121 DEADNAVVRTWGERREETNLKNHVELVELLGIADLKKGANVAGGRGYYLKGDGVRLNQAL 180 Query: 181 INYGLDFLEKRGYTAMQTPFFMRKDIMARCAQLAQFDEELYKVTGEGDDKYLIATAEQPI 240 IN+GLDFLEKR YTA+QTPFFMRKDIM +CAQLAQFDEELYKVTGEGDDKYLIATAEQP+ Sbjct: 181 INFGLDFLEKRKYTALQTPFFMRKDIMGKCAQLAQFDEELYKVTGEGDDKYLIATAEQPL 240 Query: 241 CSYHLEDWIHPSQLPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKIEQFCVTSPNGND 300 C+YH++DWIHP++LP+RYAGYS+CFRKEAGSHGRDTLGIFRVHQFEK+EQFC+T P+GND Sbjct: 241 CAYHIDDWIHPNELPLRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCLTKPSGND 300 Query: 301 SWDMHEEMIKNSEDFYKTLNLPYQVVAIVSGALNDAAAKKYDLEAWFPASHTYRELVSCS 360 SW+MHEEMIKNSE+FY+ L LPYQVV+IVSGALNDAAAKKYDLEAWFPAS TYRELVSCS Sbjct: 301 SWEMHEEMIKNSEEFYQMLKLPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRELVSCS 360 Query: 361 NCTDYQSRRLETRFGQKKSNEQTKQYVHMLNSTLTATERTLCCILENYQKEDGVEIPEVL 420 NCTDYQSR+LE R GQKK NEQ KQY H+LNSTLTATERTLCCILENYQ E GV IPEVL Sbjct: 361 NCTDYQSRKLEIRCGQKKGNEQAKQYCHLLNSTLTATERTLCCILENYQTEKGVAIPEVL 420 Query: 421 QPFMGGKTFMPFKAK 436 QPFMGGKTF+ F K Sbjct: 421 QPFMGGKTFLDFLKK 435
BLAST of CmaCh11G011280 vs. ExPASy Swiss-Prot
Match:
Q7KWQ2 (Serine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=serS PE=1 SV=1)
HSP 1 Score: 502.3 bits (1292), Expect = 5.7e-141
Identity = 250/436 (57.34%), Postives = 320/436 (73.39%), Query Frame = 0
Query: 2 LDINLFREEKGNNPEIIRESQRRRFASVELVDEVIKLDKEWRQRQFELENLRKEFNKINK 61 LDI LFR +KG NP++IR+SQ+ R+A+V+ V EVI LDK ++ ++ L+N E+ K+NK Sbjct: 3 LDIVLFRADKGGNPDLIRQSQKVRYANVDAVQEVIDLDKVVKETKYRLDNTNAEYAKLNK 62 Query: 62 QIAQLRIAGEDASEKIKDTEENKKLSAEKDVEAKDVLKQLNSKLEIIGNLVHDSVPVSND 121 +A + AGE A E I EE + + E +V L KL IGN+VH+SVP+ N+ Sbjct: 63 SVAMKKKAGESADEIIAQAEELNQSIIKLKAEVSEVELLLRKKLRPIGNIVHESVPIDNN 122 Query: 122 EANNAVIRSWGEKLVKPKLKNHVDLVELLGIADSKKGSEIAGGRGYYLKGDGVRLNQALI 181 E NN +I++WGE L +H +L+E++ D ++G+ ++G R Y+LKG GV LNQA+I Sbjct: 123 EDNNQIIKTWGECKTSEGLLHHHELLEMIDGYDPERGTLVSGHRCYFLKGIGVLLNQAII 182 Query: 182 NYGLDFLEKRGYTAMQTPFFMRKDIMARCAQLAQFDEELYKVTGEGDDKYLIATAEQPIC 241 N+ L + KRG +QTPFFM KD+MA+ AQL QFD+ELYKVTG+ ++KYLIAT+EQPI Sbjct: 183 NFALMHMTKRGSVPLQTPFFMNKDVMAKTAQLEQFDDELYKVTGDNEEKYLIATSEQPIS 242 Query: 242 SYHLEDWIHPSQLPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKIEQFCVTSPNGNDS 301 ++H ++WI LP +Y GYSTCFRKEAGSHGRDT GIFRVHQFEKIEQFC+T P S Sbjct: 243 AFHQDEWIEEKDLPKKYVGYSTCFRKEAGSHGRDTWGIFRVHQFEKIEQFCITEP--EKS 302 Query: 302 WDMHEEMIKNSEDFYKTLNLPYQVVAIVSGALNDAAAKKYDLEAWFPASHTYRELVSCSN 361 WDM EEMI NSE FY+ L +PY+VV IVSGALN+AA+KKYDLE WFP + YRELVSCSN Sbjct: 303 WDMMEEMINNSEQFYQELGIPYRVVNIVSGALNNAASKKYDLEGWFPGYNQYRELVSCSN 362 Query: 362 CTDYQSRRLETRFGQKKSNEQTKQYVHMLNSTLTATERTLCCILENYQKEDGVEIPEVLQ 421 CTDYQSR LE R G KK +Q K+YVHMLNSTL AT R +CCILENYQ E G+ +P L+ Sbjct: 363 CTDYQSRDLEIRCGMKKQGQQQKKYVHMLNSTLAATTRVICCILENYQTEGGITVPVPLR 422 Query: 422 PFMGGKTFMPF-KAKP 437 P++ GK F+PF KA P Sbjct: 423 PYL-GKDFIPFVKAAP 435
BLAST of CmaCh11G011280 vs. ExPASy Swiss-Prot
Match:
O14018 (Serine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC29A4.15 PE=3 SV=1)
HSP 1 Score: 501.9 bits (1291), Expect = 7.5e-141
Identity = 265/456 (58.11%), Postives = 332/456 (72.81%), Query Frame = 0
Query: 1 MLDINLFREEKGNNPEIIRESQRRRFASVELVDEVIKLDKEWRQRQFELENLRKEFNKIN 60 MLDINLF+ EKG NPEIIRESQR+R A V +VD+VI++ KEW +FEL+N K N++ Sbjct: 1 MLDINLFQVEKGGNPEIIRESQRKRGADVGVVDKVIEMYKEWVSLRFELDNTNKSINRVQ 60 Query: 61 KQIAQLRIAGEDASEKIKD----TEENKKLSAEKDVEAKDVLKQLNSKLEIIGNLVHDSV 120 K+I A EDASE +++ TE K L ++ + K++L ++S IGN+VHDSV Sbjct: 61 KEIGLKMKAKEDASELLEEKNSLTERKKNLIEQETAKNKEMLNVVSS----IGNIVHDSV 120 Query: 121 PVSNDEANNAVIRSWGEKLVKPKLKN---HVDLVELLGIADSKKGSEIAGGRGYYLKGDG 180 PVS DE NN +IR W + V + KN H +++ L D ++G +++G RGY+L+ G Sbjct: 121 PVSMDEDNNEIIRKWAPEGVTVEKKNCLSHHEVLTRLDGYDPERGVKVSGHRGYFLRQYG 180 Query: 181 VRLNQALINYGLDFLEKRGYTAMQTPFFMRKDIMARCAQLAQFDEELYKVTGEGDDKYLI 240 V N ALI YGLDFLEKRGY A+Q P + KD+MA+ AQL QFDEELYKV +++YLI Sbjct: 181 VFFNLALIQYGLDFLEKRGYIALQAPTMLNKDVMAKTAQLEQFDEELYKVIDGDEERYLI 240 Query: 241 ATAEQPICSYHLEDWIH-PS-QLPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKIEQF 300 AT+EQPI +YH +W PS QLP++YAGYSTC+R+EAGSHGRD GIFRVH FEKIEQF Sbjct: 241 ATSEQPISAYHSGEWFEKPSEQLPLKYAGYSTCYRREAGSHGRDAWGIFRVHAFEKIEQF 300 Query: 301 CVTSPNGNDSWDMHEEMIKNSEDFYKTLNLPYQVVAIVSGALNDAAAKKYDLEAWFPASH 360 +T P SW+ EMI ++EDFYK+L LPY++VAIVSGALN+AAAKKYDLEAWFP Sbjct: 301 VLTDP--EKSWEAFTEMINHAEDFYKSLELPYRIVAIVSGALNNAAAKKYDLEAWFPFQG 360 Query: 361 TYRELVSCSNCTDYQSRRLETRFGQKKSNEQTKQYVHMLNSTLTATERTLCCILENYQKE 420 Y+ELVSCSNCTDYQSR LE R G KK ++ K+YVH LNSTL ATER LCCILENYQ Sbjct: 361 EYKELVSCSNCTDYQSRNLEIRCGVKKMGDREKKYVHCLNSTLCATERALCCILENYQTP 420 Query: 421 DGVEIPEVLQPFMGGKTFMPF-KAKPTTSDAKGKKS 447 DGV +P+VLQP+MGGKTF+PF K P S +K K+ Sbjct: 421 DGVNVPKVLQPYMGGKTFLPFTKELPKNSTSKKGKN 450
BLAST of CmaCh11G011280 vs. ExPASy Swiss-Prot
Match:
Q9HGT6 (Serine--tRNA ligase, cytoplasmic OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=SES1 PE=1 SV=1)
HSP 1 Score: 465.7 bits (1197), Expect = 5.9e-130
Identity = 256/465 (55.05%), Postives = 321/465 (69.03%), Query Frame = 0
Query: 1 MLDINLFREEKGNNPEIIRESQRRRFASVELVDEVIKLDKEWRQRQFELENLRKEFNKIN 60 MLDIN F EKG +PEII+ SQ++R SVELVDE+I KEW + +F+L+ K+ N + Sbjct: 1 MLDINAFLVEKGGDPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQ 60 Query: 61 KQIAQLRIAGEDASEKIKDTEE---NKKLSAEKDVEAKDVLKQLNSKLEIIGNLVHDSVP 120 K+I + A EDA + I + E+ KK EK+ EA K L SK+ +GN+VH+SV Sbjct: 61 KEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEAD---KNLRSKINQVGNIVHESVV 120 Query: 121 VSNDEANNAVIRSW-GEKLVKP-----------KLKNHVDLVELLGIADSKKGSEIAGGR 180 S DE NN ++R+W E KP KL +H L+ L G D ++G I G R Sbjct: 121 DSQDEENNELVRTWTPENYKKPEQIAAATGAPAKLSHHEVLLRLDGY-DPERGVRIVGHR 180 Query: 181 GYYLKGDGVRLNQALINYGLDFLEKRGYTAMQTPFFMRKDIMARCAQLAQFDEELYKVTG 240 GY+L+ GV LNQALINYGL FL +GY +Q P M K++MA+ AQL+QFDEELYKV Sbjct: 181 GYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVID 240 Query: 241 EGDDKYLIATAEQPICSYHLEDWIH--PSQLPIRYAGYSTCFRKEAGSHGRDTLGIFRVH 300 D+KYLIAT+EQPI +YH +W QLP+RYAGYS+CFR+EAGSHG+D GIFRVH Sbjct: 241 GEDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVH 300 Query: 301 QFEKIEQFCVTSPNGNDSWDMHEEMIKNSEDFYKTLNLPYQVVAIVSGALNDAAAKKYDL 360 FEKIEQF +T P SW+ + MI SE+FY++L LPY+VV IVSG LN+AAAKKYDL Sbjct: 301 AFEKIEQFVLTEP--EKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSGELNNAAAKKYDL 360 Query: 361 EAWFPASHTYRELVSCSNCTDYQSRRLETRFGQKKSNEQTKQYVHMLNSTLTATERTLCC 420 EAWFP Y+ELVSCSNCTDYQSR LE R G K+ N+Q K+YVH LNSTL+ATERT+CC Sbjct: 361 EAWFPFQQEYKELVSCSNCTDYQSRNLEIRCGIKQQNQQEKKYVHCLNSTLSATERTICC 420 Query: 421 ILENYQKEDGVEIPEVLQPFMGGK-TFMPF---KAKPTTSDAKGK 445 ILENYQKEDG+ IPEVL+ ++ G+ F+P+ K TTS K K Sbjct: 421 ILENYQKEDGLVIPEVLRKYIPGEPEFIPYIKELPKNTTSVKKAK 459
BLAST of CmaCh11G011280 vs. TAIR 10
Match:
AT5G27470.1 (seryl-tRNA synthetase / serine--tRNA ligase )
HSP 1 Score: 739.6 bits (1908), Expect = 1.5e-213
Identity = 353/451 (78.27%), Postives = 408/451 (90.47%), Query Frame = 0
Query: 1 MLDINLFREEKGNNPEIIRESQRRRFASVELVDEVIKLDKEWRQRQFELENLRKEFNKIN 60 MLDINLFREEKGNNPEIIRESQRRRFASVE+VDE+IKLDKEWRQRQFE+++ RKEFNK+N Sbjct: 1 MLDINLFREEKGNNPEIIRESQRRRFASVEIVDEIIKLDKEWRQRQFEVDSFRKEFNKLN 60 Query: 61 KQIAQLRIAGEDASEKIKDTEENKKLSAEKDVEAKDVLKQLNSKLEIIGNLVHDSVPVSN 120 KQ+AQL+I EDASE I+ TE+NK+ S K+ E ++ L +KLE +GNLVHDSVPV Sbjct: 61 KQVAQLKIKKEDASEIIQQTEKNKQDSTAKEAEVREAYAALKAKLEQVGNLVHDSVPVDK 120 Query: 121 DEANNAVIRSWGEKLVKP---KLKNHVDLVELLGIADSKKGSEIAGGRGYYLKGDGVRLN 180 DEANN VI+ WGEK KLKNHVDLVELLGIAD+K+G+EIAG RG++LKGDG+ LN Sbjct: 121 DEANNLVIKLWGEKRFSTPGLKLKNHVDLVELLGIADTKRGAEIAGARGFFLKGDGLMLN 180 Query: 181 QALINYGLDFLEKRGYTAMQTPFFMRKDIMARCAQLAQFDEELYKVTGEGDDKYLIATAE 240 QALIN+GL FL+KRG+T +Q PFFMRKD+MA+CAQLAQFDEELYKVTGEGDDKYLIATAE Sbjct: 181 QALINFGLTFLKKRGFTGLQPPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATAE 240 Query: 241 QPICSYHLEDWIHPSQLPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKIEQFCVTSPN 300 QP+C+YH+++WIHP++LP+RYAGYS+CFRKEAGSHGRDTLGIFRVHQFEKIEQFC+T PN Sbjct: 241 QPLCAYHIDEWIHPTELPLRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKIEQFCITGPN 300 Query: 301 GNDSWDMHEEMIKNSEDFYKTLNLPYQVVAIVSGALNDAAAKKYDLEAWFPASHTYRELV 360 N SW+M +EM+KNSEDFY+ L LPYQ+V+IVSGALNDAAAKKYDLEAWFP+S T+RELV Sbjct: 301 ENASWEMLDEMMKNSEDFYQALKLPYQIVSIVSGALNDAAAKKYDLEAWFPSSETFRELV 360 Query: 361 SCSNCTDYQSRRLETRFGQKKSNEQTKQYVHMLNSTLTATERTLCCILENYQKEDGVEIP 420 SCSNCTDYQ+RRLE R+GQKKSNEQTKQYVHMLNSTLTATERT+CCILENYQ+EDGV+IP Sbjct: 361 SCSNCTDYQARRLEIRYGQKKSNEQTKQYVHMLNSTLTATERTICCILENYQREDGVDIP 420 Query: 421 EVLQPFMGGKTFMPFKAKPTTSDAKGKKSKA 449 EVLQPFMGG+TF+PFKAKP +D KGKKSKA Sbjct: 421 EVLQPFMGGETFLPFKAKPVVADTKGKKSKA 451
BLAST of CmaCh11G011280 vs. TAIR 10
Match:
AT1G11870.2 (Seryl-tRNA synthetase )
HSP 1 Score: 243.0 bits (619), Expect = 4.4e-64
Identity = 150/429 (34.97%), Postives = 238/429 (55.48%), Query Frame = 0
Query: 13 NNPEIIRESQRRRFASVELVDEVIKLDKEWRQRQFELENLRKEFNKINKQIAQLRIAGED 72 +N E + + R R ++ L + V++L + Q E+E LR+E N + K++ + Sbjct: 86 DNKEAVEINIRNRNSNANL-EAVLQLYENMVNLQKEVERLREERNNVAKKMK----GKLE 145 Query: 73 ASEKIKDTEENKKLSAEKDVEAKDVLK---QLNSKLEIIGNLVHDSVPVSNDEANNAVIR 132 SE+ + EE K L +D++K +L + I N+ H VPV ++++ Sbjct: 146 PSERERLVEEGKNLKESLVTLEEDLVKLKDELQHVAQSIPNMTHPDVPVGGEDSSAIRQE 205 Query: 133 SWGEKLVKPKLKNHVDLVELLGIADSKKGSEIAGGRGYYLKGDGVRLNQALINYGLDFLE 192 + +K+H+ L + L + D +E++G + +YLK + V L AL+N+ L + Sbjct: 206 VGSPREFSFPIKDHLQLGKDLDLIDFDSAAEVSGSKFFYLKNEAVLLEMALLNWTLSQVM 265 Query: 193 KRGYTAMQTPFFMRKDIMARCAQLAQFDE-ELYKVTGEGDDKYLIATAEQPICSYHLEDW 252 K+GYT + TP +R I+ +C + D ++Y + +G D+ LI TAE P+ H++ Sbjct: 266 KKGYTPLTTPEIVRSSIVEKCGFQPRGDNTQVYSI--DGTDQCLIGTAEIPVGGIHMDSI 325 Query: 253 IHPSQLPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKIEQFCVTSPNGNDSWDMHEEM 312 + S LP++Y +S CFR EAG+ G T G++RVHQF K E F + P DS H+E+ Sbjct: 326 LLESALPLKYIAFSHCFRTEAGAAGAATKGLYRVHQFSKAEMFVICQP--EDSESFHQEL 385 Query: 313 IKNSEDFYKTLNLPYQVVAIVSGALNDAAAKKYDLEAWFPASHTYRELVSCSNCTDYQSR 372 I+ ED + +L L ++ + + + L A +K+D+EAW P + E+ S SNCTDYQSR Sbjct: 386 IQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRFGEISSASNCTDYQSR 445 Query: 373 RLETRF--------GQK--KSNEQTKQYVHMLNSTLTATERTLCCILENYQKEDG-VEIP 427 RL R+ G K K+N ++VH LN+T A R + C+LENYQ+EDG V IP Sbjct: 446 RLGIRYRPSEPPQTGPKKGKANLPATKFVHTLNATACAVPRMMVCLLENYQQEDGSVVIP 505
BLAST of CmaCh11G011280 vs. TAIR 10
Match:
AT1G11870.1 (Seryl-tRNA synthetase )
HSP 1 Score: 243.0 bits (619), Expect = 4.4e-64
Identity = 150/429 (34.97%), Postives = 238/429 (55.48%), Query Frame = 0
Query: 13 NNPEIIRESQRRRFASVELVDEVIKLDKEWRQRQFELENLRKEFNKINKQIAQLRIAGED 72 +N E + + R R ++ L + V++L + Q E+E LR+E N + K++ + Sbjct: 84 DNKEAVEINIRNRNSNANL-EAVLQLYENMVNLQKEVERLREERNNVAKKMK----GKLE 143 Query: 73 ASEKIKDTEENKKLSAEKDVEAKDVLK---QLNSKLEIIGNLVHDSVPVSNDEANNAVIR 132 SE+ + EE K L +D++K +L + I N+ H VPV ++++ Sbjct: 144 PSERERLVEEGKNLKESLVTLEEDLVKLKDELQHVAQSIPNMTHPDVPVGGEDSSAIRQE 203 Query: 133 SWGEKLVKPKLKNHVDLVELLGIADSKKGSEIAGGRGYYLKGDGVRLNQALINYGLDFLE 192 + +K+H+ L + L + D +E++G + +YLK + V L AL+N+ L + Sbjct: 204 VGSPREFSFPIKDHLQLGKDLDLIDFDSAAEVSGSKFFYLKNEAVLLEMALLNWTLSQVM 263 Query: 193 KRGYTAMQTPFFMRKDIMARCAQLAQFDE-ELYKVTGEGDDKYLIATAEQPICSYHLEDW 252 K+GYT + TP +R I+ +C + D ++Y + +G D+ LI TAE P+ H++ Sbjct: 264 KKGYTPLTTPEIVRSSIVEKCGFQPRGDNTQVYSI--DGTDQCLIGTAEIPVGGIHMDSI 323 Query: 253 IHPSQLPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKIEQFCVTSPNGNDSWDMHEEM 312 + S LP++Y +S CFR EAG+ G T G++RVHQF K E F + P DS H+E+ Sbjct: 324 LLESALPLKYIAFSHCFRTEAGAAGAATKGLYRVHQFSKAEMFVICQP--EDSESFHQEL 383 Query: 313 IKNSEDFYKTLNLPYQVVAIVSGALNDAAAKKYDLEAWFPASHTYRELVSCSNCTDYQSR 372 I+ ED + +L L ++ + + + L A +K+D+EAW P + E+ S SNCTDYQSR Sbjct: 384 IQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRFGEISSASNCTDYQSR 443 Query: 373 RLETRF--------GQK--KSNEQTKQYVHMLNSTLTATERTLCCILENYQKEDG-VEIP 427 RL R+ G K K+N ++VH LN+T A R + C+LENYQ+EDG V IP Sbjct: 444 RLGIRYRPSEPPQTGPKKGKANLPATKFVHTLNATACAVPRMMVCLLENYQQEDGSVVIP 503
BLAST of CmaCh11G011280 vs. TAIR 10
Match:
AT1G11870.3 (Seryl-tRNA synthetase )
HSP 1 Score: 153.7 bits (387), Expect = 3.5e-37
Identity = 98/315 (31.11%), Postives = 168/315 (53.33%), Query Frame = 0
Query: 13 NNPEIIRESQRRRFASVELVDEVIKLDKEWRQRQFELENLRKEFNKINKQIAQLRIAGED 72 +N E + + R R ++ L + V++L + Q E+E LR+E N + K++ + Sbjct: 86 DNKEAVEINIRNRNSNANL-EAVLQLYENMVNLQKEVERLREERNNVAKKMK----GKLE 145 Query: 73 ASEKIKDTEENKKLSAEKDVEAKDVLK---QLNSKLEIIGNLVHDSVPVSNDEANNAVIR 132 SE+ + EE K L +D++K +L + I N+ H VPV ++++ Sbjct: 146 PSERERLVEEGKNLKESLVTLEEDLVKLKDELQHVAQSIPNMTHPDVPVGGEDSSAIRQE 205 Query: 133 SWGEKLVKPKLKNHVDLVELLGIADSKKGSEIAGGRGYYLKGDGVRLNQALINYGLDFLE 192 + +K+H+ L + L + D +E++G + +YLK + V L AL+N+ L + Sbjct: 206 VGSPREFSFPIKDHLQLGKDLDLIDFDSAAEVSGSKFFYLKNEAVLLEMALLNWTLSQVM 265 Query: 193 KRGYTAMQTPFFMRKDIMARCAQLAQFDE-ELYKVTGEGDDKYLIATAEQPICSYHLEDW 252 K+GYT + TP +R I+ +C + D ++Y + +G D+ LI TAE P+ H++ Sbjct: 266 KKGYTPLTTPEIVRSSIVEKCGFQPRGDNTQVYSI--DGTDQCLIGTAEIPVGGIHMDSI 325 Query: 253 IHPSQLPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKIEQFCVTSPNGNDSWDMHEEM 312 + S LP++Y +S CFR EAG+ G T G++RVHQF K E F + P DS H+E+ Sbjct: 326 LLESALPLKYIAFSHCFRTEAGAAGAATKGLYRVHQFSKAEMFVICQP--EDSESFHQEL 385 Query: 313 IKNSEDFYKTLNLPY 324 I+ ED + +L L + Sbjct: 386 IQIEEDLFTSLGLHF 391
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Q39230 2.1e-212 78.27 Serine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana OX=3702 GN=At5g27470 PE... [more]
O81983 2.0e-210 80.69 Serine--tRNA ligase OS=Helianthus annuus OX=4232 PE=2 SV=1 [more]
Q7KWQ2 5.7e-141 57.34 Serine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=serS PE... [more]
O14018 7.5e-141 58.11 Serine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC... [more]
Q9HGT6 5.9e-130 55.05 Serine--tRNA ligase, cytoplasmic OS=Candida albicans (strain SC5314 / ATCC MYA-2... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
G C A G G T T A A A G C G T T T T C T C T G T C T C T C C C T C G C T C A A G A T T G C A G T T T T T G G A A T T T A T T C G T C G T G C T G T G G A A G G G G G A A T C T C A G A G G C G G A T A G T C A G A G A T G T T G G A C A T C A A T T T G T T C A G G G A A G A G A A G G G C A A C A A T C C T G A A A T C A T T C G C G A G T C T C A A C G C C G C C G A T T T G C C A G C G T T G A A C T C G T T G A T G A A G T A A T T A A G C T T G A C A A G G A A T G G C G T C A A C G C C A A T T T G A G C T T G A G A A T C T C A G G A A G G A G T T C A A T A A G A T T A A C A A G C A A A T T G C T C A G C T C A G A A T A G C T G G T G A G G A T G C G T C G G A G A A G A T T A A A G A C A C T G A A G A A A A C A A A A A G T T G T C T G C A G A G A A A G A C G T T G A A G C T A A G G A C G T G T T A A A A C A G T T G A A T T C A A A A T T G G A A A T A A T T G G A A A C C T T G T G C A C G A T T C C G T T C C C G T C A G C A A T G A T G A G G C T A A T A A T G C T G T A A T C A G A T C G T G G G G T G A G A A A C T G G T A A A A C C A A A A C T A A A G A A T C A T G T T G A T C T T G T T G A G C T T C T T G G A A T T G C A G A T A G C A A A A A A G G T T C T G A A A T A G C A G G T G G T A G A G G C T A C T A C C T C A A A G G A G A T G G T G T G C G T T T G A A C C A A G C T T T G A T C A A T T A T G G C C T C G A C T T T T T A G A G A A A A G G G G T T A C A C A G C A A T G C A G A C T C C T T T C T T C A T G A G A A A A G A T A T C A T G G C T A G A T G T G C T C A A C T A G C A C A A T T T G A T G A A G A A C T T T A T A A A G T T A C T G G T G A G G G G G A T G A T A A G T A T C T A A T T G C C A C T G C T G A A C A A C C A A T T T G T T C A T A T C A T C T T G A A G A T T G G A T T C A T C C T T C C C A G T T G C C T A T A A G A T A T G C T G G G T A T T C A A C T T G C T T C C G C A A A G A A G C G G G T T C C C A T G G T C G A G A T A C T C T T G G A A T T T T C C G A G T C C A C C A A T T C G A G A A A A T A G A G C A A T T T T G T G T C A C C A G C C C A A A T G G C A A T G A T T C G T G G G A C A T G C A T G A A G A G A T G A T T A A G A A T T C T G A G G A C T T C T A C A A G A C G T T A A A T C T C C C A T A C C A A G T T G T G G C T A T A G T T T C T G G T G C A T T A A A T G A T G C G G C T G C C A A G A A A T A C G A T C T G G A A G C A T G G T T T C C T G C A T C C C A T A C T T A C A G G G A G T T A G T A T C C T G T T C A A A T T G C A C T G A T T A T C A G T C C A G A A G A T T A G A G A C C C G A T T T G G T C A G A A A A A G A G C A A C G A G C A G A C A A A G C A A T A T G T G C A C A T G C T G A A T T C C A C G C T C A C A G C A A C A G A A A G G A C T T T G T G C T G C A T T C T T G A G A A C T A C C A G A A A G A A G A T G G G G T G G A A A T A C C A G A A G T T C T A C A A C C A T T T A T G G G T G G A A A A A C T T T T A T G C C C T T C A A G G C G A A A C C A A C A A C A A G C G A T G C C A A A G G G A A G A A A T C G A A G G C C T G A T T G C A T A A T T T T C T T C T C T C C C A T T T G A T T T A T A A A A T T T C T G A C T C A A G G A A A G G A T A T A T T A C T C A C A G T A T T G T T G G A A C T T C A A A T T A T C T T T T T G G T G G G T A T G A A G T T A T C A C G A C A C T A G T A A C A G A T G G C T G T T C T T A T T T A T A T G C T T C A A T T G G C T G C C A A T C G T T T T C A T C A A C C C T G T C A A G C A A G C C C A A A G C T G A C C C C A A T A A T G A A A T T C A T G G A C C A C T C C A A C T T G G T C T G G A A A C T C T T A T T T A G A A A A T T C A G A T T G T T A G G T T T G A G A T G A G A T A T T G C C A T T G A A C G C T G T T T T G G T A T A A T T T A T A G C T A T C A T T T T T A T A A T C G T T A G A T G C A T G G G G A G C G T T T T C A A T A G T T T T C T G G G G A A A A A A C T G A A G T C A A C A A G A A A G A A G A G A T T G A T T T A T G C A T G T T T A C C A T C A T T T T G G A G T T T A T G T T C T T T G G C A A A T C T G A T T A T T G T T A G T T T G A T T T A A T T T C C C T T C T G T A T T G A A T T T G A G T T C A C T C G C C C C A T T T T C A T G A A C C A C A T C A C C A A C 200 400 600 800 1000 1200 1400 1600 1800 2000 Score = Expect = 1.2E-145 / Score = 486.6 Score = Score = Score = 66.38 Score = 59.79 Score = 45.24 Score = 61.44 Score = 65.58 Expect = 1.9E-147 / Score = 489.6 Expect = 2.0E-185 / Score = 614.4 Score = Expect = 1.1E-37 / Score = 129.8 Expect = 4.0E-38 / Score = 132.2 Expect = 4.7E-26 / Score = 91.1 Score = 22.289726 Expect = 0.0 / Score = 522.12 Score = Sequence Coil G3DSA:3.30.930.10 PTHR11778:SF18 SSF55681 PR00981 TIGR00414 PIRSF001529 PTHR11778 PF00587 G3DSA:1.10.287.40 PF02403 PS50862 cd00770 SSF46589
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 49..83
None No IPR available GENE3D 3.30.930.10 Bira Bifunctional Protein; Domain 2 coord: 110..440 e-value: 1.2E-145 score: 486.6
None No IPR available PANTHER PTHR11778:SF18 BNAA09G03770D PROTEIN coord: 1..432
None No IPR available SUPERFAMILY 55681 Class II aaRS and biotin synthetases coord: 121..431
IPR002317 Serine-tRNA ligase, type1 PRINTS PR00981 TRNASYNTHSER coord: 339..355 score: 61.44 coord: 357..373 score: 65.58 coord: 268..280 score: 66.38 coord: 322..335 score: 45.24 coord: 280..293 score: 59.79
IPR002317 Serine-tRNA ligase, type1 TIGRFAM TIGR00414 TIGR00414 coord: 1..424 e-value: 1.9E-147 score: 489.6
IPR002317 Serine-tRNA ligase, type1 PIRSF PIRSF001529 Ser-tRNA_ligase coord: 1..433 e-value: 2.0E-185 score: 614.4
IPR002317 Serine-tRNA ligase, type1 PANTHER PTHR11778 SERYL-TRNA SYNTHETASE coord: 1..432
IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) PFAM PF00587 tRNA-synt_2b coord: 221..408 e-value: 1.1E-37 score: 129.8
IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily GENE3D 1.10.287.40 coord: 1..109 e-value: 4.0E-38 score: 132.2
IPR015866 Serine-tRNA synthetase, type1, N-terminal PFAM PF02403 Seryl_tRNA_N coord: 1..112 e-value: 4.7E-26 score: 91.1
IPR006195 Aminoacyl-tRNA synthetase, class II PROSITE PS50862 AA_TRNA_LIGASE_II coord: 142..417 score: 22.289726
IPR033729 Serine-tRNA ligase catalytic core domain CDD cd00770 SerRS_core coord: 124..424 e-value: 0.0 score: 522.12
IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm SUPERFAMILY 46589 tRNA-binding arm coord: 1..117
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0006434
seryl-tRNA aminoacylation
biological_process
GO:0006418
tRNA aminoacylation for protein translation
cellular_component
GO:0005829
cytosol
molecular_function
GO:0005524
ATP binding
molecular_function
GO:0004828
serine-tRNA ligase activity
molecular_function
GO:0000049
tRNA binding
molecular_function
GO:0004812
aminoacyl-tRNA ligase activity
molecular_function
GO:0000166
nucleotide binding