Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCAGCAAGGGCATGGCCAGCCTCAATCCATGGGAGCGGTTGGCAGTGGTGGTCAGATAGCATATGGCAGTAACTTGTACCATCCCGGCCAAATAACTGTAGGCTCGACTTCTGGATCTGTTGTTACATCGGTTGGAGGTATTCAGTCTACGAGTCAACCTGGTGGAGCGCAGCTTGGTCAACATCAACTTGCTTATCAGCATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTCTGGGCTAATCAGTACCAAGAGATTGAGAAGGTAACGGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTTGAATTGACTTTACGCTCTTGGAATCATACTGAAGAGAACAAGCGCAGAACGCTTCAAAAGAATGATATTGCTGCAGCTATCACCAGAACTGACATTTTCGATTTTCTGGTTGATATCGTGCCTAGGGAGGATCTGAAAGACGAAGTACTCACATCAATTCCAAGAGGATCAATAACAGTTGGAGGACCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAGGTCGGAGCACCCGGAATGATTATGGGCAAGCCTGTGATGGACCCGGCTATATATGCTCAACAATCACACCCTTACATGCCTCCACAAATGTGGCAGCACACACAAGATCAAGCCCCTCCTGATCAATAG
mRNA sequence
ATGGATCAGCAAGGGCATGGCCAGCCTCAATCCATGGGAGCGGTTGGCAGTGGTGGTCAGATAGCATATGGCAGTAACTTGTACCATCCCGGCCAAATAACTGTAGGCTCGACTTCTGGATCTGTTGTTACATCGGTTGGAGGTATTCAGTCTACGAGTCAACCTGGTGGAGCGCAGCTTGGTCAACATCAACTTGCTTATCAGCATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTCTGGGCTAATCAGTACCAAGAGATTGAGAAGGTAACGGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTTGAATTGACTTTACGCTCTTGGAATCATACTGAAGAGAACAAGCGCAGAACGCTTCAAAAGAATGATATTGCTGCAGCTATCACCAGAACTGACATTTTCGATTTTCTGGTTGATATCGTGCCTAGGGAGGATCTGAAAGACGAAGTACTCACATCAATTCCAAGAGGATCAATAACAGTTGGAGGACCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAGGTCGGAGCACCCGGAATGATTATGGGCAAGCCTGTGATGGACCCGGCTATATATGCTCAACAATCACACCCTTACATGCCTCCACAAATGTGGCAGCACACACAAGATCAAGCCCCTCCTGATCAATAG
Coding sequence (CDS)
ATGGATCAGCAAGGGCATGGCCAGCCTCAATCCATGGGAGCGGTTGGCAGTGGTGGTCAGATAGCATATGGCAGTAACTTGTACCATCCCGGCCAAATAACTGTAGGCTCGACTTCTGGATCTGTTGTTACATCGGTTGGAGGTATTCAGTCTACGAGTCAACCTGGTGGAGCGCAGCTTGGTCAACATCAACTTGCTTATCAGCATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTCTGGGCTAATCAGTACCAAGAGATTGAGAAGGTAACGGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTTGAATTGACTTTACGCTCTTGGAATCATACTGAAGAGAACAAGCGCAGAACGCTTCAAAAGAATGATATTGCTGCAGCTATCACCAGAACTGACATTTTCGATTTTCTGGTTGATATCGTGCCTAGGGAGGATCTGAAAGACGAAGTACTCACATCAATTCCAAGAGGATCAATAACAGTTGGAGGACCTGGAGATGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAGGTCGGAGCACCCGGAATGATTATGGGCAAGCCTGTGATGGACCCGGCTATATATGCTCAACAATCACACCCTTACATGCCTCCACAAATGTGGCAGCACACACAAGATCAAGCCCCTCCTGATCAATAG
Protein sequence
MDQQGHGQPQSMGAVGSGGQIAYGSNLYHPGQITVGSTSGSVVTSVGGIQSTSQPGGAQLGQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAIYAQQSHPYMPPQMWQHTQDQAPPDQ
Homology
BLAST of CmaCh11G011240 vs. ExPASy Swiss-Prot
Match:
Q8L4B2 (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana OX=3702 GN=NFYC9 PE=1 SV=1)
HSP 1 Score: 262.7 bits (670), Expect = 4.4e-69
Identity = 164/263 (62.36%), Postives = 182/263 (69.20%), Query Frame = 0
Query: 1 MDQQGHGQPQSMGAVGSGGQIAYGSNLYHPGQITVGSTSGSVVTSVGGIQSTSQPGGAQL 60
MDQQ HGQ G + YG+N Y + S + T GG +QPG
Sbjct: 1 MDQQDHGQ---------SGAMNYGTNPYQTNPM-----STTAATVAGG---AAQPG---- 60
Query: 61 GQHQLAYQHIH-QQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDV 120
QLA+ IH QQQQQQL QQLQ FW NQ++EIEK TDFKNHSLPLARIKKIMKADEDV
Sbjct: 61 ---QLAFHQIHQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDV 120
Query: 121 RMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 180
RMISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIV
Sbjct: 121 RMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIV 180
Query: 181 PREDLKDEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAIYAQQ 240
PREDL+DEVL SIPRG++ PY Y+P+ AP +G PGM+MG P A
Sbjct: 181 PREDLRDEVLGSIPRGTVPEAAAA-GYPYGYLPAGTAP-IGNPGMVMGNPG-----GAYP 229
Query: 241 SHPYMPPQMWQHTQDQAP--PDQ 261
+PYM MW Q QAP PDQ
Sbjct: 241 PNPYMGQPMW---QQQAPDQPDQ 229
BLAST of CmaCh11G011240 vs. ExPASy Swiss-Prot
Match:
Q9ZVL3 (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NFYC3 PE=1 SV=1)
HSP 1 Score: 245.7 bits (626), Expect = 5.6e-64
Identity = 147/249 (59.04%), Postives = 162/249 (65.06%), Query Frame = 0
Query: 12 MGAVGSGGQIAYGSNLYHPGQITVGSTSGSVVTSVGGIQSTSQPGGAQLGQHQLAYQHIH 71
M G + YGSN Y +T T G AY IH
Sbjct: 1 MDQQGQSSAMNYGSNPYQTNAMTTTPT----------------------GSDHPAYHQIH 60
Query: 72 QQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFA 131
QQQQQQL QQLQ+FW Q++EIEK TDFKNHSLPLARIKKIMKADEDVRMISAEAPV+FA
Sbjct: 61 QQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFA 120
Query: 132 RACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTS 191
RACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIVPREDL+DEVL
Sbjct: 121 RACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGG 180
Query: 192 IPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAIYAQQSHPYMPPQMWQH 251
+ + T G PY Y+P AP +G PGM+MG P P +PYM MWQ
Sbjct: 181 VGAEAATAAG----YPYGYLPPGTAP-IGNPGMVMGNPGAYP------PNPYMGQPMWQQ 216
Query: 252 T-QDQAPPD 260
+Q PD
Sbjct: 241 PGPEQQDPD 216
BLAST of CmaCh11G011240 vs. ExPASy Swiss-Prot
Match:
Q655V5 (Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC4 PE=1 SV=1)
HSP 1 Score: 214.2 bits (544), Expect = 1.8e-54
Identity = 143/265 (53.96%), Postives = 170/265 (64.15%), Query Frame = 0
Query: 8 QPQSMGAVGSGGQIAYGSNLYHPGQITVGSTSGSVVTSVGGIQSTSQPGGA------QL- 67
QPQ V +GG Y + Y P + +V T+ I + SQP + QL
Sbjct: 6 QPQPAIGVVAGGSQVYPA--YRP--------AATVPTAPAVIPAGSQPAPSFPANPDQLS 65
Query: 68 GQHQLAY---QHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADE 127
QHQL Y Q HQQ QQQ Q+QLQ FWA + +IE+ TDFKNHSLPLARIKKIMKADE
Sbjct: 66 AQHQLVYQQAQQFHQQLQQQQQRQLQQFWAERLVDIEQTTDFKNHSLPLARIKKIMKADE 125
Query: 128 DVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVD 187
DVRMISAEAPV+FA+ACE+FILELTLRSW HTEENKRRTLQKNDIAAAITRTD++DFLVD
Sbjct: 126 DVRMISAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDMYDFLVD 185
Query: 188 IVPREDLKDEVLTSIPRGSI-TVGGPGDALPY-CYMPSQHAPQVGAPGMIMGKPVMDPAI 247
IVPR+DLK+E + +PR + +G P D+ PY Y+P Q P G A
Sbjct: 186 IVPRDDLKEEGV-GLPRAGLPPLGVPADSYPYGYYVPQQQVPGAGI------------AY 245
Query: 248 YAQQSHPYMPPQMWQHTQDQAPPDQ 261
QQ HP Q Q Q++ P +Q
Sbjct: 246 GGQQGHPGYLWQDPQEQQEEPPAEQ 247
BLAST of CmaCh11G011240 vs. ExPASy Swiss-Prot
Match:
Q9SMP0 (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NFYC1 PE=1 SV=1)
HSP 1 Score: 212.6 bits (540), Expect = 5.3e-54
Identity = 118/186 (63.44%), Postives = 136/186 (73.12%), Query Frame = 0
Query: 66 AYQHIHQQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAE 125
+Y H+ QQQ QQQLQ FW Q QEIE+V DFKNH LPLARIKKIMKADEDVRMISAE
Sbjct: 32 SYHHLLQQQ----QQQLQLFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAE 91
Query: 126 APVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 185
AP+LFA+ACE+FILELT+RSW H EENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+++K
Sbjct: 92 APILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 151
Query: 186 DEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDP-AIYAQQSHPYM 245
DE ++ G + V +PY Y P G GM++G+P MDP +Y Q
Sbjct: 152 DE--AAVLGGGMVVAPTASGVPYYYPPM--GQPAGPGGMMIGRPAMDPNGVYVQP----- 204
Query: 246 PPQMWQ 251
P Q WQ
Sbjct: 212 PSQAWQ 204
BLAST of CmaCh11G011240 vs. ExPASy Swiss-Prot
Match:
Q9FMV5 (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NFYC4 PE=1 SV=1)
HSP 1 Score: 209.9 bits (533), Expect = 3.4e-53
Identity = 130/218 (59.63%), Postives = 146/218 (66.97%), Query Frame = 0
Query: 40 GSVVTSV-----GGIQSTSQPGGAQLGQHQLAYQHIHQQQQQQLQQQLQTFWANQYQEIE 99
GS VT+V G S GGA Y H+ QQQQQQLQ FW Q QEIE
Sbjct: 21 GSAVTTVIPPPPSGSASIVTGGGA-------TYHHLLQQQQQQLQM----FWTYQRQEIE 80
Query: 100 KVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKR 159
+V DFKNH LPLARIKKIMKADEDVRMISAEAP+LFA+ACE+FILELT+RSW H EENKR
Sbjct: 81 QVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKR 140
Query: 160 RTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEV-LTSIPRGSITVGGPGDALPYCYMPS 219
RTLQKNDIAAAITRTDIFDFLVDIVPRE++K+E S G V +PY Y P
Sbjct: 141 RTLQKNDIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPYYYPPM 200
Query: 220 QHAPQVGAPGMIMGKPVMDPA-IYAQQSHPYMPPQMWQ 251
G GM++G+P MDP+ +YAQ P Q WQ
Sbjct: 201 GQPAVPG--GMMIGRPAMDPSGVYAQP-----PSQAWQ 220
BLAST of CmaCh11G011240 vs. TAIR 10
Match:
AT1G08970.4 (nuclear factor Y, subunit C9 )
HSP 1 Score: 262.7 bits (670), Expect = 3.1e-70
Identity = 164/263 (62.36%), Postives = 182/263 (69.20%), Query Frame = 0
Query: 1 MDQQGHGQPQSMGAVGSGGQIAYGSNLYHPGQITVGSTSGSVVTSVGGIQSTSQPGGAQL 60
MDQQ HGQ G + YG+N Y + S + T GG +QPG
Sbjct: 1 MDQQDHGQ---------SGAMNYGTNPYQTNPM-----STTAATVAGG---AAQPG---- 60
Query: 61 GQHQLAYQHIH-QQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDV 120
QLA+ IH QQQQQQL QQLQ FW NQ++EIEK TDFKNHSLPLARIKKIMKADEDV
Sbjct: 61 ---QLAFHQIHQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDV 120
Query: 121 RMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 180
RMISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIV
Sbjct: 121 RMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIV 180
Query: 181 PREDLKDEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAIYAQQ 240
PREDL+DEVL SIPRG++ PY Y+P+ AP +G PGM+MG P A
Sbjct: 181 PREDLRDEVLGSIPRGTVPEAAAA-GYPYGYLPAGTAP-IGNPGMVMGNPG-----GAYP 229
Query: 241 SHPYMPPQMWQHTQDQAP--PDQ 261
+PYM MW Q QAP PDQ
Sbjct: 241 PNPYMGQPMW---QQQAPDQPDQ 229
BLAST of CmaCh11G011240 vs. TAIR 10
Match:
AT1G08970.1 (nuclear factor Y, subunit C9 )
HSP 1 Score: 262.7 bits (670), Expect = 3.1e-70
Identity = 164/263 (62.36%), Postives = 182/263 (69.20%), Query Frame = 0
Query: 1 MDQQGHGQPQSMGAVGSGGQIAYGSNLYHPGQITVGSTSGSVVTSVGGIQSTSQPGGAQL 60
MDQQ HGQ G + YG+N Y + S + T GG +QPG
Sbjct: 1 MDQQDHGQ---------SGAMNYGTNPYQTNPM-----STTAATVAGG---AAQPG---- 60
Query: 61 GQHQLAYQHIH-QQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDV 120
QLA+ IH QQQQQQL QQLQ FW NQ++EIEK TDFKNHSLPLARIKKIMKADEDV
Sbjct: 61 ---QLAFHQIHQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDV 120
Query: 121 RMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 180
RMISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIV
Sbjct: 121 RMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIV 180
Query: 181 PREDLKDEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAIYAQQ 240
PREDL+DEVL SIPRG++ PY Y+P+ AP +G PGM+MG P A
Sbjct: 181 PREDLRDEVLGSIPRGTVPEAAAA-GYPYGYLPAGTAP-IGNPGMVMGNPG-----GAYP 229
Query: 241 SHPYMPPQMWQHTQDQAP--PDQ 261
+PYM MW Q QAP PDQ
Sbjct: 241 PNPYMGQPMW---QQQAPDQPDQ 229
BLAST of CmaCh11G011240 vs. TAIR 10
Match:
AT1G08970.3 (nuclear factor Y, subunit C9 )
HSP 1 Score: 262.7 bits (670), Expect = 3.1e-70
Identity = 164/263 (62.36%), Postives = 182/263 (69.20%), Query Frame = 0
Query: 1 MDQQGHGQPQSMGAVGSGGQIAYGSNLYHPGQITVGSTSGSVVTSVGGIQSTSQPGGAQL 60
MDQQ HGQ G + YG+N Y + S + T GG +QPG
Sbjct: 1 MDQQDHGQ---------SGAMNYGTNPYQTNPM-----STTAATVAGG---AAQPG---- 60
Query: 61 GQHQLAYQHIH-QQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDV 120
QLA+ IH QQQQQQL QQLQ FW NQ++EIEK TDFKNHSLPLARIKKIMKADEDV
Sbjct: 61 ---QLAFHQIHQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDV 120
Query: 121 RMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 180
RMISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIV
Sbjct: 121 RMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIV 180
Query: 181 PREDLKDEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAIYAQQ 240
PREDL+DEVL SIPRG++ PY Y+P+ AP +G PGM+MG P A
Sbjct: 181 PREDLRDEVLGSIPRGTVPEAAAA-GYPYGYLPAGTAP-IGNPGMVMGNPG-----GAYP 229
Query: 241 SHPYMPPQMWQHTQDQAP--PDQ 261
+PYM MW Q QAP PDQ
Sbjct: 241 PNPYMGQPMW---QQQAPDQPDQ 229
BLAST of CmaCh11G011240 vs. TAIR 10
Match:
AT1G08970.2 (nuclear factor Y, subunit C9 )
HSP 1 Score: 262.7 bits (670), Expect = 3.1e-70
Identity = 164/263 (62.36%), Postives = 182/263 (69.20%), Query Frame = 0
Query: 1 MDQQGHGQPQSMGAVGSGGQIAYGSNLYHPGQITVGSTSGSVVTSVGGIQSTSQPGGAQL 60
MDQQ HGQ G + YG+N Y + S + T GG +QPG
Sbjct: 1 MDQQDHGQ---------SGAMNYGTNPYQTNPM-----STTAATVAGG---AAQPG---- 60
Query: 61 GQHQLAYQHIH-QQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDV 120
QLA+ IH QQQQQQL QQLQ FW NQ++EIEK TDFKNHSLPLARIKKIMKADEDV
Sbjct: 61 ---QLAFHQIHQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDV 120
Query: 121 RMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIV 180
RMISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIV
Sbjct: 121 RMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIV 180
Query: 181 PREDLKDEVLTSIPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAIYAQQ 240
PREDL+DEVL SIPRG++ PY Y+P+ AP +G PGM+MG P A
Sbjct: 181 PREDLRDEVLGSIPRGTVPEAAAA-GYPYGYLPAGTAP-IGNPGMVMGNPG-----GAYP 229
Query: 241 SHPYMPPQMWQHTQDQAP--PDQ 261
+PYM MW Q QAP PDQ
Sbjct: 241 PNPYMGQPMW---QQQAPDQPDQ 229
BLAST of CmaCh11G011240 vs. TAIR 10
Match:
AT1G54830.2 (nuclear factor Y, subunit C3 )
HSP 1 Score: 245.7 bits (626), Expect = 4.0e-65
Identity = 147/249 (59.04%), Postives = 162/249 (65.06%), Query Frame = 0
Query: 12 MGAVGSGGQIAYGSNLYHPGQITVGSTSGSVVTSVGGIQSTSQPGGAQLGQHQLAYQHIH 71
M G + YGSN Y +T T G AY IH
Sbjct: 1 MDQQGQSSAMNYGSNPYQTNAMTTTPT----------------------GSDHPAYHQIH 60
Query: 72 QQQQQQLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFA 131
QQQQQQL QQLQ+FW Q++EIEK TDFKNHSLPLARIKKIMKADEDVRMISAEAPV+FA
Sbjct: 61 QQQQQQLTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFA 120
Query: 132 RACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTS 191
RACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIVPREDL+DEVL
Sbjct: 121 RACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGG 180
Query: 192 IPRGSITVGGPGDALPYCYMPSQHAPQVGAPGMIMGKPVMDPAIYAQQSHPYMPPQMWQH 251
+ + T G PY Y+P AP +G PGM+MG P P +PYM MWQ
Sbjct: 181 VGAEAATAAG----YPYGYLPPGTAP-IGNPGMVMGNPGAYP------PNPYMGQPMWQQ 216
Query: 252 T-QDQAPPD 260
+Q PD
Sbjct: 241 PGPEQQDPD 216
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q8L4B2 | 4.4e-69 | 62.36 | Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana OX=3702 GN=NF... | [more] |
Q9ZVL3 | 5.6e-64 | 59.04 | Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana OX=3702 GN=NF... | [more] |
Q655V5 | 1.8e-54 | 53.96 | Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39... | [more] |
Q9SMP0 | 5.3e-54 | 63.44 | Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NF... | [more] |
Q9FMV5 | 3.4e-53 | 59.63 | Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NF... | [more] |