Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTTGAGGCTGTTGTTTTCCATCAGCACCCATTTGGCAACAACGACAACAACAATGATCTCTTCAATTTGGTCTCTTCTTCGGCTCCCTTCACCTTCCCCCATGATGAACAACACCAAGATCTTTACTTTCTCACCAACCAAACACTCAATGGTGGTGGCGGAGGGAGTGGGCGGCCGGCGAGGCGGCGGCGGGGGGGAGGGAGAACCCAAAAGAATAAAGAGGAAATAGAGAATCAAAGAATCACTCATATTACTGTGGAGAGGAACCGGAGAAAGCAAATGAATGAGTATCTCTCTGTTCTTCGATCATTGATGCCTCACTCCTACGTCCAAAGGGTATCATCCCTCTCTTTCTCTCTCCTCTTATTACTACACAAACTCATCGAATTTTAAAATTAAAAAAAAAGGGTCTCTTTACTTTGCAAAAACAAAATGGCCCATGTCTCTCTCCCTCTCAAAAAAGGTAGTAAACATATTAGAAGGGATCGGATTGGTTTCGTTAGAAGAACACGACTCTCGAGAGTTTTGCTTTAGACTTCCTCAAAAAGCCTCATATCAATAGAGAGAATATTCTTTAATTGTAAGTTTATGATCCTTCCCTAAATTAGCGGAGATAGGATTTTCGTACTCTTGGTATTACATCATGAGGGTGTGGCTCCATGATTAGTAGACAATAAAGAAAGAAATTAAAAAAAAAAAAAAAAGTTGCGTCTTTTTTGTGTGTTTCACTTCAATTATAGCAAAGAGGGTTTGGCACAAAAAGGGAAAAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAACGGTGGGCTAAAAACATGATAGGCAGCAAGACCAGGCGCACAAACCCATGGGGGGTTTTGATATGTAATGATACAAAGAATGAAGAATTAATGGTTGGTTGTGTTTTGATTACTGGTGGCAGGGCGACCAAGCCTCAATCATAGGCGGAGCCATCGACTTTGTGAAGCAGCTTGAGCAGCAAGTACATTTGCTTAGCAGCGCTCAAACATATGTAAACCCCTGTTTTCCCCCTCAAAATGCACCAATCTCTCATTTCTTTACCTGCCCTCACCTCTCCTCTGCTGCTTCCTCCTCCTCCTCCTCCTCCTCCCCCATGTCTTCCAACCAGATTCACTCCCCCATTGCCCACGTTCATGTCTCCATGGCTGACTCCCATGCAAACCTCAAGATTAGCTGTACAAAGTTCCCTAAACAGCTTCTTAAGATCGTCTCTGCTTTGCATTCCTTGCGCCTCTCTGTTCTTCATCTCAATCTCTCCACTGCCCACCAAACTGTGCTCTATTCATTCAGTCTCAAGGTTGGTGTTCTTGTTATTATTACCCATTTCATCCTTTTTTTTTAATTCAATTTTAAGATGGGTTCTTGTTTCTCTTTTAGGTTGAGGAAGATTGTGGGCTTTCTTCTGAGGATGAAATTGCTAGAGCTGTGTATCAGTTGGTTTGCAGAATTCAAGAAGAGGCCTTCTCCGTCTGAGATATCAAAAACTAAATTAGCATTTTTAATTCAACTTTGAGATTGTTCTTGTTCTGTTCTTCTTCTTTTTTTCTCTCTCGATCTAAATTTTTGGTCCGTTCATTATGTTCTTTGTGTTTCATTAATTACTTTTAGGCTCTGTCATCATAACTTCCCCTAATAATCTTAGTTTCAAG
mRNA sequence
ATGGCTCTTGAGGCTGTTGTTTTCCATCAGCACCCATTTGGCAACAACGACAACAACAATGATCTCTTCAATTTGGTCTCTTCTTCGGCTCCCTTCACCTTCCCCCATGATGAACAACACCAAGATCTTTACTTTCTCACCAACCAAACACTCAATGGTGGTGGCGGAGGGAGTGGGCGGCCGGCGAGGCGGCGGCGGGGGGGAGGGAGAACCCAAAAGAATAAAGAGGAAATAGAGAATCAAAGAATCACTCATATTACTGTGGAGAGGAACCGGAGAAAGCAAATGAATGAGTATCTCTCTGTTCTTCGATCATTGATGCCTCACTCCTACGTCCAAAGGGGCGACCAAGCCTCAATCATAGGCGGAGCCATCGACTTTGTGAAGCAGCTTGAGCAGCAAGTACATTTGCTTAGCAGCGCTCAAACATATGTAAACCCCTGTTTTCCCCCTCAAAATGCACCAATCTCTCATTTCTTTACCTGCCCTCACCTCTCCTCTGCTGCTTCCTCCTCCTCCTCCTCCTCCTCCCCCATGTCTTCCAACCAGATTCACTCCCCCATTGCCCACGTTCATGTCTCCATGGCTGACTCCCATGCAAACCTCAAGATTAGCTGTACAAAGTTCCCTAAACAGCTTCTTAAGATCGTCTCTGCTTTGCATTCCTTGCGCCTCTCTGTTCTTCATCTCAATCTCTCCACTGCCCACCAAACTGTGCTCTATTCATTCAGTCTCAAGGTTGAGGAAGATTGTGGGCTTTCTTCTGAGGATGAAATTGCTAGAGCTGTGTATCAGTTGGTTTGCAGAATTCAAGAAGAGGCCTTCTCCGTCTGAGATATCAAAAACTAAATTAGCATTTTTAATTCAACTTTGAGATTGTTCTTGTTCTGTTCTTCTTCTTTTTTTCTCTCTCGATCTAAATTTTTGGTCCGTTCATTATGTTCTTTGTGTTTCATTAATTACTTTTAGGCTCTGTCATCATAACTTCCCCTAATAATCTTAGTTTCAAG
Coding sequence (CDS)
ATGGCTCTTGAGGCTGTTGTTTTCCATCAGCACCCATTTGGCAACAACGACAACAACAATGATCTCTTCAATTTGGTCTCTTCTTCGGCTCCCTTCACCTTCCCCCATGATGAACAACACCAAGATCTTTACTTTCTCACCAACCAAACACTCAATGGTGGTGGCGGAGGGAGTGGGCGGCCGGCGAGGCGGCGGCGGGGGGGAGGGAGAACCCAAAAGAATAAAGAGGAAATAGAGAATCAAAGAATCACTCATATTACTGTGGAGAGGAACCGGAGAAAGCAAATGAATGAGTATCTCTCTGTTCTTCGATCATTGATGCCTCACTCCTACGTCCAAAGGGGCGACCAAGCCTCAATCATAGGCGGAGCCATCGACTTTGTGAAGCAGCTTGAGCAGCAAGTACATTTGCTTAGCAGCGCTCAAACATATGTAAACCCCTGTTTTCCCCCTCAAAATGCACCAATCTCTCATTTCTTTACCTGCCCTCACCTCTCCTCTGCTGCTTCCTCCTCCTCCTCCTCCTCCTCCCCCATGTCTTCCAACCAGATTCACTCCCCCATTGCCCACGTTCATGTCTCCATGGCTGACTCCCATGCAAACCTCAAGATTAGCTGTACAAAGTTCCCTAAACAGCTTCTTAAGATCGTCTCTGCTTTGCATTCCTTGCGCCTCTCTGTTCTTCATCTCAATCTCTCCACTGCCCACCAAACTGTGCTCTATTCATTCAGTCTCAAGGTTGAGGAAGATTGTGGGCTTTCTTCTGAGGATGAAATTGCTAGAGCTGTGTATCAGTTGGTTTGCAGAATTCAAGAAGAGGCCTTCTCCGTCTGA
Protein sequence
MALEAVVFHQHPFGNNDNNNDLFNLVSSSAPFTFPHDEQHQDLYFLTNQTLNGGGGGSGRPARRRRGGGRTQKNKEEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYVQRGDQASIIGGAIDFVKQLEQQVHLLSSAQTYVNPCFPPQNAPISHFFTCPHLSSAASSSSSSSSPMSSNQIHSPIAHVHVSMADSHANLKISCTKFPKQLLKIVSALHSLRLSVLHLNLSTAHQTVLYSFSLKVEEDCGLSSEDEIARAVYQLVCRIQEEAFSV
Homology
BLAST of CmaCh11G011200 vs. ExPASy Swiss-Prot
Match:
Q9SK91 (Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2)
HSP 1 Score: 189.1 bits (479), Expect = 6.6e-47
Identity = 115/222 (51.80%), Postives = 152/222 (68.47%), Query Frame = 0
Query: 63 RRRRGGGRTQKNKEEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYVQRGDQASIIG 122
RR+R R KNKEEIENQR+THI VERNRRKQMNEYL+VLRSLMP SY QRGDQASI+G
Sbjct: 95 RRKRRRTRNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVG 154
Query: 123 GAIDFVKQLEQQVHLLSSAQTYVNPCFPPQN---------APISHFFTCPHLSSAASSS- 182
GAI++VK+LE H+L S + P+ P + FF+ P S+ +SS
Sbjct: 155 GAINYVKELE---HILQSMEPKRTRTHDPKGDKTSTSSLVGPFTDFFSFPQYSTKSSSDV 214
Query: 183 -SSSSSPMSSNQIHSPIAHVHVSMADSHANLKISCTKFPKQLLKIVSALHSLRLSVLHLN 242
SSSSP A + V++A+SHAN+KI K P+QLLK++++L SLRL++LHLN
Sbjct: 215 PESSSSP----------AEIEVTVAESHANIKIMTKKKPRQLLKLITSLQSLRLTLLHLN 274
Query: 243 LSTAHQTVLYSFSLKVEEDCGLSSEDEIARAVYQLVCRIQEE 274
++T H ++LYS S++VEE L++ D+IA A+ Q + RIQEE
Sbjct: 275 VTTLHNSILYSISVRVEEGSQLNTVDDIATALNQTIRRIQEE 303
BLAST of CmaCh11G011200 vs. ExPASy Swiss-Prot
Match:
Q9C7T4 (Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1)
HSP 1 Score: 178.7 bits (452), Expect = 9.0e-44
Identity = 108/229 (47.16%), Postives = 149/229 (65.07%), Query Frame = 0
Query: 57 GSGRPARRRRGGGRTQKNKEEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYVQRGD 116
G GR RRR R+ KNKEEIENQR+THI VERNRRKQMNEYL+VLRSLMP Y QRGD
Sbjct: 102 GGGRRKRRRT---RSSKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGD 161
Query: 117 QASIIGGAIDFVKQLEQQVHLL-----------SSAQTYVNPCFPPQNAPISHFFTCPHL 176
QASI+GGAI+++K+LE + + + + P S FF P
Sbjct: 162 QASIVGGAINYLKELEHHLQSMEPPVKTATEDTGAGHDQTKTTSASSSGPFSDFFAFPQY 221
Query: 177 SSAASSSSSSSSPMSSNQIHSPIAHVHVSMADSHANLKISCTKFPKQLLKIVSALHSLRL 236
S+ +S++++ +A + V+M +SHA+LKI K P+QLLK+VS++ SLRL
Sbjct: 222 SNRPTSAAAAEG----------MAEIEVTMVESHASLKILAKKRPRQLLKLVSSIQSLRL 281
Query: 237 SVLHLNLSTAHQTVLYSFSLKVEEDCGLSSEDEIARAVYQLVCRIQEEA 275
++LHLN++T +VLYS S+KVEE L++ ++IA AV Q++ RI+EE+
Sbjct: 282 TLLHLNVTTRDDSVLYSISVKVEEGSQLNTVEDIAAAVNQILRRIEEES 317
BLAST of CmaCh11G011200 vs. ExPASy Swiss-Prot
Match:
Q9M128 (Transcription factor bHLH57 OS=Arabidopsis thaliana OX=3702 GN=BHLH57 PE=1 SV=1)
HSP 1 Score: 157.5 bits (397), Expect = 2.1e-37
Identity = 93/213 (43.66%), Postives = 141/213 (66.20%), Query Frame = 0
Query: 63 RRRRGGGRTQKNKEEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYVQRGDQASIIG 122
+R+R R KNK+E+ENQR+THI VERNRR+QMNE+L+ LRSLMP S++QRGDQASI+G
Sbjct: 95 KRKRKRTRAPKNKDEVENQRMTHIAVERNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVG 154
Query: 123 GAIDFVKQLEQQVHLLSSAQTYVNPCFPPQNAPI--SHFFTCPHLSSAASSSSSSSSPMS 182
GAIDF+K+LEQ + L + + P+ A S C + SS +S S++S + +
Sbjct: 155 GAIDFIKELEQLLQSLEAEKRKDGTDETPKTASCSSSSSLACTN-SSISSVSTTSENGFT 214
Query: 183 SNQIHSPIAHVHVSMADSHANLKISCTKFPKQLLKIVSALHSLRLSVLHLNLSTAHQTVL 242
+ V ++ +H +LK+ C + +Q+LK + ++ L+L++LHL +S++ V+
Sbjct: 215 ARFGGGDTTEVEATVIQNHVSLKVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDFVI 274
Query: 243 YSFSLKVEEDCGLSSEDEIARAVYQLVCRIQEE 274
YSF+LK+E+ C L S DEIA AV+Q+ +I E
Sbjct: 275 YSFNLKMEDGCKLGSADEIATAVHQIFEQINGE 306
BLAST of CmaCh11G011200 vs. ExPASy Swiss-Prot
Match:
Q56XR0 (Transcription factor bHLH71 OS=Arabidopsis thaliana OX=3702 GN=BHLH71 PE=1 SV=1)
HSP 1 Score: 152.5 bits (384), Expect = 6.9e-36
Identity = 101/249 (40.56%), Postives = 147/249 (59.04%), Query Frame = 0
Query: 58 SGRPARRRRGGGRTQKNKEEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYVQRGDQ 117
+ R +RRR R KN+EE ENQR+THI VERNRR+QMN++LSVLRSLMP + +GDQ
Sbjct: 63 TNRGKKRRRRKPRVCKNEEEAENQRMTHIAVERNRRRQMNQHLSVLRSLMPQPFAHKGDQ 122
Query: 118 ASIIGGAIDFVKQLEQQVHLLSSAQTY--------------------VNPCFPPQNAPIS 177
ASI+GGAIDF+K+LE ++ L + + + NP P + +S
Sbjct: 123 ASIVGGAIDFIKELEHKLLSLEAQKHHNAKLNQSVTSSTSQDSNGEQENP-HQPSSLSLS 182
Query: 178 HFFTCPHLSSAASSSSSSSSPMSSNQIHSPIAHVHVSMADSHANLKI-----------SC 237
FF + S + + S+SS + +P+ + V++ ++HAN++I
Sbjct: 183 QFFLHSYDPSQENRNGSTSS------VKTPMEDLEVTLIETHANIRILSRRRGFRWSTLA 242
Query: 238 TKFPKQLLKIVSALHSLRLSVLHLNLSTAHQTVLYSFSLKVEEDCGLSSEDEIARAVYQL 276
T P QL K+V++L SL LS+LHL+++T +YS S KVEE C LSS D+IA AV+ +
Sbjct: 243 TTKPPQLSKLVASLQSLSLSILHLSVTTLDNYAIYSISAKVEESCQLSSVDDIAGAVHHM 302
BLAST of CmaCh11G011200 vs. ExPASy Swiss-Prot
Match:
Q700E4 (Transcription factor bHLH67 OS=Arabidopsis thaliana OX=3702 GN=BHLH67 PE=2 SV=1)
HSP 1 Score: 144.8 bits (364), Expect = 1.4e-33
Identity = 89/206 (43.20%), Postives = 132/206 (64.08%), Query Frame = 0
Query: 63 RRRRGGGRTQKNKEEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYVQRGDQASIIG 122
+R+R + KN EEIENQRI HI VERNRR+QMNE+++ LR+L+P SY+QRGDQASI+G
Sbjct: 158 KRKRRKTKPSKNNEEIENQRINHIAVERNRRRQMNEHINSLRALLPPSYIQRGDQASIVG 217
Query: 123 GAIDFVKQLEQQVHLL-SSAQTYVNPCFPPQNAPISHFFTCPHLSSAASSSSSSSSPMSS 182
GAI++VK LEQ + L S +T ++H S SS+ ++
Sbjct: 218 GAINYVKVLEQIIQSLESQKRTQQQSNSEVVENALNHL-----------SGISSNDLWTT 277
Query: 183 NQIHSPIAHVHVSMADSHANLKISCTKFPKQLLKIVSALHSLRLSVLHLNLST-AHQTVL 242
+ + I + ++ +H +LK+ C K QLLK + +L L+L+VLHLN++T +H +V
Sbjct: 278 LEDQTCIPKIEATVIQNHVSLKVQCEKKQGQLLKGIISLEKLKLTVLHLNITTSSHSSVS 337
Query: 243 YSFSLKVEEDCGLSSEDEIARAVYQL 267
YSF+LK+E++C L S DEI AV+++
Sbjct: 338 YSFNLKMEDECDLESADEITAAVHRI 352
BLAST of CmaCh11G011200 vs. TAIR 10
Match:
AT1G22490.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )
HSP 1 Score: 189.1 bits (479), Expect = 4.7e-48
Identity = 115/222 (51.80%), Postives = 152/222 (68.47%), Query Frame = 0
Query: 63 RRRRGGGRTQKNKEEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYVQRGDQASIIG 122
RR+R R KNKEEIENQR+THI VERNRRKQMNEYL+VLRSLMP SY QRGDQASI+G
Sbjct: 95 RRKRRRTRNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVG 154
Query: 123 GAIDFVKQLEQQVHLLSSAQTYVNPCFPPQN---------APISHFFTCPHLSSAASSS- 182
GAI++VK+LE H+L S + P+ P + FF+ P S+ +SS
Sbjct: 155 GAINYVKELE---HILQSMEPKRTRTHDPKGDKTSTSSLVGPFTDFFSFPQYSTKSSSDV 214
Query: 183 -SSSSSPMSSNQIHSPIAHVHVSMADSHANLKISCTKFPKQLLKIVSALHSLRLSVLHLN 242
SSSSP A + V++A+SHAN+KI K P+QLLK++++L SLRL++LHLN
Sbjct: 215 PESSSSP----------AEIEVTVAESHANIKIMTKKKPRQLLKLITSLQSLRLTLLHLN 274
Query: 243 LSTAHQTVLYSFSLKVEEDCGLSSEDEIARAVYQLVCRIQEE 274
++T H ++LYS S++VEE L++ D+IA A+ Q + RIQEE
Sbjct: 275 VTTLHNSILYSISVRVEEGSQLNTVDDIATALNQTIRRIQEE 303
BLAST of CmaCh11G011200 vs. TAIR 10
Match:
AT1G72210.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )
HSP 1 Score: 178.7 bits (452), Expect = 6.4e-45
Identity = 108/229 (47.16%), Postives = 149/229 (65.07%), Query Frame = 0
Query: 57 GSGRPARRRRGGGRTQKNKEEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYVQRGD 116
G GR RRR R+ KNKEEIENQR+THI VERNRRKQMNEYL+VLRSLMP Y QRGD
Sbjct: 102 GGGRRKRRRT---RSSKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGD 161
Query: 117 QASIIGGAIDFVKQLEQQVHLL-----------SSAQTYVNPCFPPQNAPISHFFTCPHL 176
QASI+GGAI+++K+LE + + + + P S FF P
Sbjct: 162 QASIVGGAINYLKELEHHLQSMEPPVKTATEDTGAGHDQTKTTSASSSGPFSDFFAFPQY 221
Query: 177 SSAASSSSSSSSPMSSNQIHSPIAHVHVSMADSHANLKISCTKFPKQLLKIVSALHSLRL 236
S+ +S++++ +A + V+M +SHA+LKI K P+QLLK+VS++ SLRL
Sbjct: 222 SNRPTSAAAAEG----------MAEIEVTMVESHASLKILAKKRPRQLLKLVSSIQSLRL 281
Query: 237 SVLHLNLSTAHQTVLYSFSLKVEEDCGLSSEDEIARAVYQLVCRIQEEA 275
++LHLN++T +VLYS S+KVEE L++ ++IA AV Q++ RI+EE+
Sbjct: 282 TLLHLNVTTRDDSVLYSISVKVEEGSQLNTVEDIAAAVNQILRRIEEES 317
BLAST of CmaCh11G011200 vs. TAIR 10
Match:
AT4G01460.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )
HSP 1 Score: 157.5 bits (397), Expect = 1.5e-38
Identity = 93/213 (43.66%), Postives = 141/213 (66.20%), Query Frame = 0
Query: 63 RRRRGGGRTQKNKEEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYVQRGDQASIIG 122
+R+R R KNK+E+ENQR+THI VERNRR+QMNE+L+ LRSLMP S++QRGDQASI+G
Sbjct: 95 KRKRKRTRAPKNKDEVENQRMTHIAVERNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVG 154
Query: 123 GAIDFVKQLEQQVHLLSSAQTYVNPCFPPQNAPI--SHFFTCPHLSSAASSSSSSSSPMS 182
GAIDF+K+LEQ + L + + P+ A S C + SS +S S++S + +
Sbjct: 155 GAIDFIKELEQLLQSLEAEKRKDGTDETPKTASCSSSSSLACTN-SSISSVSTTSENGFT 214
Query: 183 SNQIHSPIAHVHVSMADSHANLKISCTKFPKQLLKIVSALHSLRLSVLHLNLSTAHQTVL 242
+ V ++ +H +LK+ C + +Q+LK + ++ L+L++LHL +S++ V+
Sbjct: 215 ARFGGGDTTEVEATVIQNHVSLKVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDFVI 274
Query: 243 YSFSLKVEEDCGLSSEDEIARAVYQLVCRIQEE 274
YSF+LK+E+ C L S DEIA AV+Q+ +I E
Sbjct: 275 YSFNLKMEDGCKLGSADEIATAVHQIFEQINGE 306
BLAST of CmaCh11G011200 vs. TAIR 10
Match:
AT5G46690.1 (beta HLH protein 71 )
HSP 1 Score: 152.5 bits (384), Expect = 4.9e-37
Identity = 101/249 (40.56%), Postives = 147/249 (59.04%), Query Frame = 0
Query: 58 SGRPARRRRGGGRTQKNKEEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYVQRGDQ 117
+ R +RRR R KN+EE ENQR+THI VERNRR+QMN++LSVLRSLMP + +GDQ
Sbjct: 63 TNRGKKRRRRKPRVCKNEEEAENQRMTHIAVERNRRRQMNQHLSVLRSLMPQPFAHKGDQ 122
Query: 118 ASIIGGAIDFVKQLEQQVHLLSSAQTY--------------------VNPCFPPQNAPIS 177
ASI+GGAIDF+K+LE ++ L + + + NP P + +S
Sbjct: 123 ASIVGGAIDFIKELEHKLLSLEAQKHHNAKLNQSVTSSTSQDSNGEQENP-HQPSSLSLS 182
Query: 178 HFFTCPHLSSAASSSSSSSSPMSSNQIHSPIAHVHVSMADSHANLKI-----------SC 237
FF + S + + S+SS + +P+ + V++ ++HAN++I
Sbjct: 183 QFFLHSYDPSQENRNGSTSS------VKTPMEDLEVTLIETHANIRILSRRRGFRWSTLA 242
Query: 238 TKFPKQLLKIVSALHSLRLSVLHLNLSTAHQTVLYSFSLKVEEDCGLSSEDEIARAVYQL 276
T P QL K+V++L SL LS+LHL+++T +YS S KVEE C LSS D+IA AV+ +
Sbjct: 243 TTKPPQLSKLVASLQSLSLSILHLSVTTLDNYAIYSISAKVEESCQLSSVDDIAGAVHHM 302
BLAST of CmaCh11G011200 vs. TAIR 10
Match:
AT3G61950.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )
HSP 1 Score: 144.8 bits (364), Expect = 1.0e-34
Identity = 89/206 (43.20%), Postives = 132/206 (64.08%), Query Frame = 0
Query: 63 RRRRGGGRTQKNKEEIENQRITHITVERNRRKQMNEYLSVLRSLMPHSYVQRGDQASIIG 122
+R+R + KN EEIENQRI HI VERNRR+QMNE+++ LR+L+P SY+QRGDQASI+G
Sbjct: 158 KRKRRKTKPSKNNEEIENQRINHIAVERNRRRQMNEHINSLRALLPPSYIQRGDQASIVG 217
Query: 123 GAIDFVKQLEQQVHLL-SSAQTYVNPCFPPQNAPISHFFTCPHLSSAASSSSSSSSPMSS 182
GAI++VK LEQ + L S +T ++H S SS+ ++
Sbjct: 218 GAINYVKVLEQIIQSLESQKRTQQQSNSEVVENALNHL-----------SGISSNDLWTT 277
Query: 183 NQIHSPIAHVHVSMADSHANLKISCTKFPKQLLKIVSALHSLRLSVLHLNLST-AHQTVL 242
+ + I + ++ +H +LK+ C K QLLK + +L L+L+VLHLN++T +H +V
Sbjct: 278 LEDQTCIPKIEATVIQNHVSLKVQCEKKQGQLLKGIISLEKLKLTVLHLNITTSSHSSVS 337
Query: 243 YSFSLKVEEDCGLSSEDEIARAVYQL 267
YSF+LK+E++C L S DEI AV+++
Sbjct: 338 YSFNLKMEDECDLESADEITAAVHRI 352
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SK91 | 6.6e-47 | 51.80 | Transcription factor bHLH94 OS=Arabidopsis thaliana OX=3702 GN=BHLH94 PE=1 SV=2 | [more] |
Q9C7T4 | 9.0e-44 | 47.16 | Transcription factor bHLH96 OS=Arabidopsis thaliana OX=3702 GN=BHLH96 PE=1 SV=1 | [more] |
Q9M128 | 2.1e-37 | 43.66 | Transcription factor bHLH57 OS=Arabidopsis thaliana OX=3702 GN=BHLH57 PE=1 SV=1 | [more] |
Q56XR0 | 6.9e-36 | 40.56 | Transcription factor bHLH71 OS=Arabidopsis thaliana OX=3702 GN=BHLH71 PE=1 SV=1 | [more] |
Q700E4 | 1.4e-33 | 43.20 | Transcription factor bHLH67 OS=Arabidopsis thaliana OX=3702 GN=BHLH67 PE=2 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT1G22490.1 | 4.7e-48 | 51.80 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | [more] |
AT1G72210.1 | 6.4e-45 | 47.16 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | [more] |
AT4G01460.1 | 1.5e-38 | 43.66 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | [more] |
AT5G46690.1 | 4.9e-37 | 40.56 | beta HLH protein 71 | [more] |
AT3G61950.1 | 1.0e-34 | 43.20 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | [more] |