Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAATTAAAAAAAAAAAATGAAAAATGAAAAATGAAAAAGAAAAATTGAGATTTATAATAGAAAGAGAAAGGAACCGTGTCTGTAACTGAAGGTCAAACTACACCCCAAAACGACACCACCACCGTAGCCACCGCAACGAAACGACACTGTTTTCCTCGCCGGCGAACTCTACCGCCGCTGCCATGTCCTTCCTTTTCGTTTGCTGATTCCCGATCGCCATCCGCCTTACTTCCTGGTTCATTTCTCCGGTGACGGCCGGGTAATCCAGCCTTCTCTCTTTTGCTTCTGATTTGATTATGAAGAGCTACGCTAAGGTTAATAGCAACAACAGTAGCACCACTAACAAGAGCGCCAACGGCTTTCTTCCGAATTCATTGAAATTTATTTCGTCCTGTATTAAAACTGCTTCTTCCGGTGTCCGCTCAGCCAGTGCTACCGTTGCTGCCTCCATCTCCGGCGATGCTCACGATCACAAGGATCAGGTCTACTTTTACTTTTTTATTTTAGTTTTTGTTTGTTGTGGATTTCGTTACTTGGGGAAGTGATTTTACGTTTTCCCCAAGTTTGCGTTTGGATGAGTTGACGATTGGATAGGGAGAGAGTTTGGCAGATTTGTATGTTTTGGGGGTGGCTTTAGGGCTGTATCGATGATTTTGGGTGTTTTAGTGCCGTCATTTTTGGTTGTTTAGAATGCTGGAGGATAAGAGAGATTAAACATTGGGAATATTTGTTCATCAAGTCTCTGGTTGCCTTTAGCTACTGCAGATTTGGTATCTCGAGGCTCCTAAGGGCATCTCTTGGAAAGAAAATGAGAATTGAGGAGAATGTGAACTAATTACTTAGTTCAGCATTTTTCCCCGTCAAATCTACATGACCACCGCTGGTTTAATGAGTGATCTTACCTAAGGATCCTGTGAGTTTAGGATTTCTTTTACTTCTTTTGATCCTTTGCATTTTGTATGGTCTGGGAGATTCTTTCGGAAATTTCAATTTTTTTGAACTTCAATTGTAGAAACATTAGATACTTGTGTTTGTTGCTAAATAAAGGGCTTTCAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNGTGTGTGCACTGATTTTGCTAGGATATTTCGAGAAGTTGGCAAGTAAAAGAAAAGAACCATTTGTAAGCGTGTGTTTTTAGTTTTATGTAGGGTTGTTTGATTGGAGAACAATAAACCAACTTTTAGGACAATGCGAGGGTTGGTGTTTTGGATAAAGCTTTATTCTTTCAATATTGCTGGTCTGCAAGCCCAAGTTCTTTGGATTTTAGCATTTCTTATGCATTATATGTTTTCTTTTTCATATTTTATTCTATTTCGTTTTACTAAGAGGATTTCTCGCTGATTAGTACTCTATACTCTGTGTACTACTAATCTCTATTACCAACTTGAGCTTGACTTAATTTGTTAATATATATATATCCTCGACCAAAATATTAGAAGTTTGAATCTCCACCTTACAAGTTGTTCAAGTAAAAAACAAAAAAAAAAATTACTAGTCTACTACCAGAAGTGCAGCCATGTTTGTTAGAGTTAAAACATGAACTACGGAGAAGTAGGACAAGAACCTACAAAGAAAAGAAGCAACACTATATGAAGAATTTTGTGAACCTGAGAACCTATTGGGATATCATTAGGATCATATAAGTCTTTAAAAGAAATTTTTGCTTTTGTTTTGAATTTGCTTTATCATATGTATACTACCTTGATTTAGATTCTTTATCATTAATTATGTCATTTTGATGTGGATGTTTAAATTTGTAGCAGCATTTTGATCAGAAATTTTCCTATTTGGAACTAGACAAATATTATTTTACAAGTGGATTTTTCTGTGATGCAATGCATCTTTAATGCAACAGACCTATTCTGTGTGGAATATATTTGTTTTCTGTAGTACTTTCTCTAGCATGTCATATTGTTATGCAATGCACAGTTTAGTAAGAATTCTCAATTGTGATCAAACAGGTATTATGGGCTGGATTCGACAGACTTGAGCTCAGTCCATCCTTCTTCAAACATGTGCTTTTAGTTGGTTATACAAATGGCTTTCAAGTTCTTGACGTTGAAGATGCTCCCAACGTCAGCGAACTGGTTTCAAGACGGGATGATCCAGCCACATTCTTGCAGATGCAGCCTCTTCCGGCTGAGTCAGCTGCTGGTCAGGAAGGCTTTGGAGCATCACACCCAATTCTTTTGGTTGTCGCATGTGATGAGACCCAGAGTTCAGGTCTGATGCAAAGTGGCAGAAATGGGTTGGTGAGAGATGGATATCCTAATGGTCATTCAGAGAACATTACCCTCTCCCCTACGGCTGTTAGGTTTTACTCATTAAAATCTCGCAGTTATGTTCATGTTCTGAGATTTCGCTCAACTGTGTACATGATTAGATGCAGCCCCAAAATTGTGGCTGTTGGTCTTGCATCACAAGTAAGCTTATATTATGCTCATGAATATTATTTGTAATTAAGAAAAAGATTTCTATTTCCTTTTTCTTTCTGATACATAATTAACCATATAAAACACTTCGCATACAATTGCCTTAACAATGGATGTGTTTTTTTTCCCCAAACTAATCAAATGGATGGATGGTTGCTGGTCTTGTAGTTAAGGAAGACCATTTTCTGGGGGACTTTTAAAAAATCAAGACTATTTTCTGATGGATTAAAAAAAAAAAAAAAAAGAAATCAAAACTATCTTTTGCTAGTTTTGCTGTTTAAACCAATAATGTGTTTCCTATGAATATTAAACTGATTATGAAGGATGGTTCATTGCTTACATTTCAATTTTTTTTTTAATTATTTACTCCTTTTGTTTACAGATTTATTGCTTTGATGCTCTCACCCTTGAGAGTAAATTTAGTGTTCTCACTTACCCAGTTCCACAATTGGGTGGCCAAGGACCAACTGGGGTTAATATTGGCTATGGACCTATGGCTGTGGGTCCTAGATGGTTAGCTTATGCTTCCAACAATCCTTTGCAGTCCAATACTGGCCGTTTAAGCCCACAAAGTCCTACACCTCCTGGTGTAAGCCCATCAACATCACCTAGCAGTGGAAGTTTGGTGGCTCGATATGCCATGGAATCTAGCAAGCATTTGGCTGCTGGGCTAATTAATTTGGGTGACAAGGGTTATAAAACATTGTCTAAATACTATCAAGAGTTTGTACCTGATGGTTCCAATTCTCCACTATCATCAAATTCAAGTCGAAAAGTTGGCCGGCTGGCATCAACAGAAACGGATGCTGATGGAATGGTTAGTCTTTTGACTTTTATACCGTTAGTTTTGCATGTGCATTGAAAAATAGTCTGATATATTTTTGCGATAGTTACTTATATTAATCAACATGTTATATCTTCTTTTGATATTTCTGAAAGCAGTAAAATATAAAAAGTAAACGGATATTGCATAGCAACCTACTAACGTTTGTGATTAAAGGTTGTCAATGTTATGCATCTTGTTCTGTGAATGACACTGAAGTTTTTGGGTATTGGCTACTAAGATTTGGCTTCTATCCTATCATTTTAGGGAGCTTAGGTATGAACTACTTAATACTTCCTACTGCTAGTTAGAGTCTGATCATATGAATGAGGACATATTTATACTATTCAATATGGGAAATTCCAATAGCTTTGCCCCCGGTTTTCAATGTTGCTCTTTTTGCAGGTTGTTGTGAAAGATTTTGTCTCTAAAGCTGTTGTATCACAATTTAAGGCTCACTCAAGTCCAATTTCTGCACTTTGTTTTGATCCAAGCGGGACCCTTCTAGTTACTGCCTCAACCCATGGTAGCAATATTAACATTTTTAGGATTATGCTATCCCGCCTACAAAATGGATCTGGTACTCACAGCTATGATTGGAGTTCCTCTCATGTGCACCTGTACAAGCTTCATCGTGGCATGACATCAGCTGTACGTTCTTGCCTTTTCATTAACTTTTCATTAACTTTTATGTGCTTATAAGTGGTCCTTTTTATTGCTCTCAATCCAGGTAATACAAGATATTTGTTTTAGTCACTATAGTCAATGGATAGCTATTGTCTCTTCCCGGGGAACATGCCATATTTTTGCTCTTTCACCTTTTGGAGGTGAAACTGTTCTTCAAATGCACAATTCTTTAGTTGATGGGCCTAATCCTTTACCAGCTTCATGTGTCCCTTGGTGGTCAACTTCATCTTTTATCACAAACCAGCAATCCCTTTCTCCTTCTCCTCCTCCTACTGTCACTCTTTCTGTGGTTAGCAGAATTAAGAATTGTAATTCAGGTTGGCTTAATACTGTCAGTATGTCAGCTGTTTCGGCATCTGGAAAGGTTTCCATTCCATCAGGTGCTGTTTCTGCTGTTTTCCATCGTTGCACACCTCAGAATCTGCAATCTCCTCAATTAAGTTCGAATACTTTGGAACATCTATTGGTGTTTACTCCTTCTGGCCATGTGATTCAACATAAACTGCTTCCACCAATGGGGGGAGAATGTGGTGAAACTATTTTGAGAAGCCCAAATGCTTCAATGCAGATGAAAGATGAGGAATTGCGAGTTAAAGTTGAACCTATTCAATGGTGGGATGTTTGCCGAAGAGCTGCTTGGCCAGAGAGAGAGGAATGCATATCTTCAATTACTCTCAGGAGAAAAGGAACTGCAGAAGCTGTTGAGGATACATCCTATAAACATGAGCATCTTGAAGCCCAAGAGTCAGAAAAGCCACGTGACTGTTCTCTCTTATACCTATCCAATTCTGAGGTGCAGATAAACTCTGGGAGGATACCTATCTGGCAGAAATCCAAGGTATTGGTCATAGTGCCCTTCTGATTTTTTTTTTAAGGCATTTATTAAGTCGGTGTTTTTTCCTCTCTATTGCAGGTACATTTCTATACAATGAGTTTTCCTGGGTCTAATGAGCCAAGTAGCATAAAAGATCACATGAATGGGGAGATTGAGATAGAGAAAATACTTACTAATGAGGTGGAAATTAAGCGGAAGGATTTGCTTCCAGTTTTCGATCATTTTCGTGGGGTACAGTCTGATTGGCATGGCAGGTGATGATAATCGTGTCTCATTTCATTGCTGTAAATTTGTGTTGCCATATTCTTTTAATTTAATATCCCGTATTAGTTGGCAGGATTTTCTGTTTTATGTCTCACCTCTTCTCTTCCAATGTATTAGGATAATTCATACCTCTAGCTAAGGAAGGAATAAAAACTGGGCAAGACATAACCTGATAGACCTCAATTCCGATTTACATATGTTAGGAATGGGACTTGTAAGATGGGATTAAGAACTAATGAGTAGCGTCATAAATAGTTATAGCCTTATAGGTAGATGCAGGTGGCTACGGGTGGTTATTTAGTCATGTGGGATTTGATCTGATGTTAGATAGTCAATTAGCTGTGTTTTGTGTTTGTAGTTAATAGTTGTAGAAGGGAAGAGGGGAGGGCTTCTTTTAAATTTTATTGAGCATAGGAAGGAGAGTTTTTCCGACCTCTCAAATGTGCAACTAGGTTGTAATCCTTCTACAAGGGGTTTCTCTAGTGATTGTGCTAACAAAAACTTCTTTCTATGTTTTTTTCTGCGAATATTTTTTTGATTTTTTTCTTTCGATAGATTCCAAAAGAAAGCCATGATGAGGTTTTTCCATAATAGGGCTTTTGCATTCTTGAAAGGGTGGTACCTTAAGGTCATGTCCAATAGATCCTTTACCTCCCTAGGAAATGTGAGATGCCATCCAAATATATTGAAAATTGTTGTTTATAAATGCAGAGAATCAATTGCTAGTTGAACAATAATTCTAAAATGACATCTTTAGTGTCACTACTATGGACTGCGTTTAGACACCCTCCTCCTTGGTGTTATTCCTGTAGTTGTCCATTTTTTGCAAGTGCTAGGCTGTGGATCTCCATCACTTGTGGGGTTGTTAGCTTGTTCAGTCTCTTTGGGCTCAATGATTGACTTTATTCGAGCTATGTTTGGCTTGGAATAGAGATTGCTTTGCTTTGGTGGAGGAGGTGTTTTTGGGTTTGCTTTTTTGAGATGAGGGCAAAGTCTTGTGGCACGCTAGTTTATTTGTCATTTTGTGGGGTATTTGACTTGAGGAGAATAATAGAATTTTTAGAGATGTAGAGAGGCGGTGAGATTTCATGCGTCTTTGTGGGCGTCAATTCCTAGTCCTTTTTGTAATTATGATCTTTGCTTGATTTTATTGGATTGAAGTTTGTTTCTGTTGTTAGTTTTTGGATTCCTATTTTATTTATTTATTATTTTTTTTTTTTGTGGTAGGTTTGTTTTTTTGCATGCCCTTGTTTTTCTTTCATTTTTCTCAATGAATGGTCAGATTCTTATATATATACATGTATAAAATTTACTACTATTGTTAATAGGAGTGGCTTGTTCTTTAAATGTTTGTCTTCAATATTTAAAACCTATGTATAAAAGTAGCAGTAGTTTAAACTGTTACAACTCAACTTTATATTTTTAAAGAACGTGACAAATTAATATTATTCTTCTAATAATTACACGAGACATAGACTTTAAGCCTTAGTGTGGTTTCATAGAGGCATAAGTGTTTCCTATGAAGCTTCTTATTGTCTGAAGAAGCCCTTGGTCTTGAGGCTAATAGTTAGAGCCTCGAAGCGTCTGGTTCAATAGCCAATAGTTTTTTCAAACATTGATCATGAGAAAGCCTTGATGAAGGTTACCCAAAGAATTTCCTTTTCATTGCTAAAGTGTTTCCCATGATCAAGATAGAATTACCATCATACATGGAGGATTGATCCATCAGGCTCCTTTACGAATAAGTCTTCCTTTCTGAAGATGACCAATGGGAGAATGAGAGTGAACTATCCCCTAGCAGGTTTAATTTGGAAGTTCAAGATTCCTCAAAAGTTTTAGTCATTTTATGGCCTTTGGCTTATAGAAGCCTAAATACCTACGAAAAGCTACAGACAGTTTTGAAATTGGGTGGTTTCGCCCTCAATCAGCTGCTTTTGCCTGCAAGAAGTCGTTTGACCACATTTTCCTGCAGCTTGATGCTTGTTTATGGCCAAGGGGTGGTATTCTATTTTCAATGAGTTTGGGGGTGGACTTTTGTCTCTCTAAGAAGATCGACTAGTGGGTTTTTGAAGTGCTTGATATGAGTGTCTTTGGAGGGAAAAGGGAGGATCTTATGGCGATGGCTTCCTCCTTTGGAGCCTTTGTAAAGAAAGGAAAAGTTGGTTATTTGAAGATAAGTGTTTTTTTTCAGTCCTTTGGCTTTTGATGCAGCATAATGTCTCTTGGTGGTGTATAAACCACACTAAATTCTTTTGTAATTATAGCGTTTTGACAACTATTAACAATTGGAAGAGTCTGTCTTTGATAGTTCTTTGGGGAAGGGGGTTCCCTCTACTCCTTTCTCTCAGGTTGTTCTGTGGTATTTTTGAGTAATATACATCTTTGTTTCTAGTTAAAAAATGAGAGTTTTTATGCCTTTTGCATGATGTAATTGTTACTGGTGGTTGTGCAAAATGTGTTAGGCTTTCAACAGCTTTGTACTCTGTCTGTGCATGCTGCAGAAGATTTATGTTGATGCTTTGTGTATTCAATTGTTGCTTATTTTTCCTCGAATACTGCCAATGTCTTAATCCATTTGTTCTTTTATTTCGTTAGCCTTTTGCTGTTGATGTGTGAATTTCTTGCACAATGTCTTAAGAGAATGGTTCATGTGAGTAAAATCTGTGATATATGTATTTGACGCTTGCTTGGTACTGAATTGCTTACCTTGATGCCACGTGATTCCATATTAATAAAGACACTTAGTTGGCTGAAAATTGGAGTTGTTGGTTTCTTTTGCAGGAGCCATGCTGGAGCAAAAAGCTCTAGCCCAAGTTTAGGTTCTCATTGCGCTGGAATGAAGTATTCAGAAGGTGATATCATTTCAGGTATAAAGTTGGATTCACCTGGCTTGGAGGAAAATTCAGATGGTTATTATAAACACTCGTTTTTTTTTCAAGTTTATCAATTCATTATATTCCAGTGTCTCCTTTTTCCCTAACCTTCTACTATGATTTTCAGATGTGGCTTATGCACCCATTGCCAAGTCTGTGGGTGACATTAAGATGGAAGAGAAGGATGGATCGGTTTTGTCCTCGCCAGTTATGAAAGAGAAGTCTTTCCAAGAATGGGCTTCGGTTTCTTCTAAACAATCTAGCACTGGACTTTCCCCAGTTGAAGGCAGTGATTTTACTAACAGCCCGTCAACGGTAACAATTTGCTCACTCTCCACCGATAGAACTATTTTAAGAGCGGTTCAGTCATCCAAATGTGGAGGGGCCAGTGAGGGCTCGAATACAAGTTCCAACCGTTCTGACTTGAGTATGAATATTCTTGATGAGGGACCAATGGGTGACTCATTTGATTACGAACCATTCTTTCAAGAAGAATATTGTAAAGCGATGGGTCTTAGTAACTGCCGTGACCCACCAGCTTTAACCGACGACATAGACAGTAGTGGTAGTCCTCATTACAGGGAGAAATGTGAGGAAGATGGGGACACTGATGACATGCTTGGTGGCATATTTGCTTTCTCTGAGGAAGGTACTTAATTGGGTGAAAATTTTGTTAATATTTTATTCTTATTTCTAGAGTGGCTTGGCTTGCGGAAGAAAAATCTGCTGTTCTGTTGTCACAAGGGTAAATGGCTCTGGCAGACTAACTAATGAATTAAATTAACAAATTTCTGAATTTAACACATACAAAACATTTATGGTGGTGACAGTATTAAAGGTATGTTTGGATGTAATCAAAATCATTGAAAGTGTTTTGTGAAAAAGGCACTTGTAGAGTTCTTTTGGTGCAAGTGTTTGATTGGAAAGTATTTCGAAAGTACTTTCAACGAGGATAAAACCAAATACTAAAATGATTTGTTGTTAGTCACATATCCAGAACCACTTGTCCTAGAAGCACTCGGAACACACCTTACAAAATTTACTTCACCAATAGTGGCTTTATGTTTCAAAGAGACACTTGTTGGTGGTTGTGGTTCATTGAAGTGATGGGTTCATATAAGATTGCACAATTGGAAGAAAGAAACAGGAGTTATATCTGTTTATTGTATTTTAAGTAAACTGATGGTTTCGTTGTGTTTTATTTTCCTGATGGGCTCAATAGCAGGATGTGAACTGCATATTTGTATGTAAATAGTTATGTTTCTTCGATTTTGGGCTAAATCTTGAACTGTGACATTTATTTCTCATGTTTGGTTTACTTATATTGCTTATGTCTATAGTTATGAAGTCCTATTCACAGCAGTCATCTGTAATTTAATGCCACAAATTCGTCTTGCAGGGTAGTATTTCTTCACATGTCATAGTGTTCTGTAATAATCGACTGATGGATTTCAAATGCCTCAGAGAACAGTCTACTGGTTGTCATCGTCGTTGTTGTGTTAGAGCGTCTATCCTAATTAATAAAATTGGGCTTGTTGGATTTCGATGAGTACAATGCTACTGACAGATAGAAGTGATATGTTATTGATGGTAGCACTGGTGGGACTGGTACCTAGTTTCCTCATTTCCTCCCCTTTGATTTCTGTGTACATACTGTAAATTGAAATTCATAGCTCAAATGATTTGTGATCAGTGTTCTTACCAATGCTGTGTAATATTATTATTCATTCTTCGAAGAAAAATGAAAAAAAAAAGGGAATAAAGTGAAAAAAATGAATAGTTTATTGCTGCTGTACTGTACTTATTTTCTCATTCAGATTTCAAATTCTTGTTTGGAAAAACTTATCAGATTGTGGAGGTTATTTTGTGGTTGTTTCTGCAGGAGCTGCTGGAAGAATTGACACTCTAGGAATTAAAGCTATATTACAACCCATCTTTACAATGAAGGAACCAAGGTCGGTCAAAT
mRNA sequence
AAAAAAAAATTAAAAAAAAAAAATGAAAAATGAAAAATGAAAAAGAAAAATTGAGATTTATAATAGAAAGAGAAAGGAACCGTGTCTGTAACTGAAGGTCAAACTACACCCCAAAACGACACCACCACCGTAGCCACCGCAACGAAACGACACTGTTTTCCTCGCCGGCGAACTCTACCGCCGCTGCCATGTCCTTCCTTTTCGTTTGCTGATTCCCGATCGCCATCCGCCTTACTTCCTGGTTCATTTCTCCGGTGACGGCCGGGTAATCCAGCCTTCTCTCTTTTGCTTCTGATTTGATTATGAAGAGCTACGCTAAGGTTAATAGCAACAACAGTAGCACCACTAACAAGAGCGCCAACGGCTTTCTTCCGAATTCATTGAAATTTATTTCGTCCTGTATTAAAACTGCTTCTTCCGGTGTCCGCTCAGCCAGTGCTACCGTTGCTGCCTCCATCTCCGGCGATGCTCACGATCACAAGGATCAGGTATTATGGGCTGGATTCGACAGACTTGAGCTCAGTCCATCCTTCTTCAAACATGTGCTTTTAGTTGGTTATACAAATGGCTTTCAAGTTCTTGACGTTGAAGATGCTCCCAACGTCAGCGAACTGGTTTCAAGACGGGATGATCCAGCCACATTCTTGCAGATGCAGCCTCTTCCGGCTGAGTCAGCTGCTGGTCAGGAAGGCTTTGGAGCATCACACCCAATTCTTTTGGTTGTCGCATGTGATGAGACCCAGAGTTCAGGTCTGATGCAAAGTGGCAGAAATGGGTTGGTGAGAGATGGATATCCTAATGGTCATTCAGAGAACATTACCCTCTCCCCTACGGCTGTTAGGTTTTACTCATTAAAATCTCGCAGTTATGTTCATGTTCTGAGATTTCGCTCAACTGTGTACATGATTAGATGCAGCCCCAAAATTGTGGCTGTTGGTCTTGCATCACAAATTTATTGCTTTGATGCTCTCACCCTTGAGAGTAAATTTAGTGTTCTCACTTACCCAGTTCCACAATTGGGTGGCCAAGGACCAACTGGGGTTAATATTGGCTATGGACCTATGGCTGTGGGTCCTAGATGGTTAGCTTATGCTTCCAACAATCCTTTGCAGTCCAATACTGGCCGTTTAAGCCCACAAAGTCCTACACCTCCTGGTGTAAGCCCATCAACATCACCTAGCAGTGGAAGTTTGGTGGCTCGATATGCCATGGAATCTAGCAAGCATTTGGCTGCTGGGCTAATTAATTTGGGTGACAAGGGTTATAAAACATTGTCTAAATACTATCAAGAGTTTGTACCTGATGGTTCCAATTCTCCACTATCATCAAATTCAAGTCGAAAAGTTGGCCGGCTGGCATCAACAGAAACGGATGCTGATGGAATGGTTGTTGTGAAAGATTTTGTCTCTAAAGCTGTTGTATCACAATTTAAGGCTCACTCAAGTCCAATTTCTGCACTTTGTTTTGATCCAAGCGGGACCCTTCTAGTTACTGCCTCAACCCATGGTAGCAATATTAACATTTTTAGGATTATGCTATCCCGCCTACAAAATGGATCTGGTACTCACAGCTATGATTGGAGTTCCTCTCATGTGCACCTGTACAAGCTTCATCGTGGCATGACATCAGCTGTAATACAAGATATTTGTTTTAGTCACTATAGTCAATGGATAGCTATTGTCTCTTCCCGGGGAACATGCCATATTTTTGCTCTTTCACCTTTTGGAGGTGAAACTGTTCTTCAAATGCACAATTCTTTAGTTGATGGGCCTAATCCTTTACCAGCTTCATGTGTCCCTTGGTGGTCAACTTCATCTTTTATCACAAACCAGCAATCCCTTTCTCCTTCTCCTCCTCCTACTGTCACTCTTTCTGTGGTTAGCAGAATTAAGAATTGTAATTCAGGTTGGCTTAATACTGTCAGTATGTCAGCTGTTTCGGCATCTGGAAAGGTTTCCATTCCATCAGGTGCTGTTTCTGCTGTTTTCCATCGTTGCACACCTCAGAATCTGCAATCTCCTCAATTAAGTTCGAATACTTTGGAACATCTATTGGTGTTTACTCCTTCTGGCCATGTGATTCAACATAAACTGCTTCCACCAATGGGGGGAGAATGTGGTGAAACTATTTTGAGAAGCCCAAATGCTTCAATGCAGATGAAAGATGAGGAATTGCGAGTTAAAGTTGAACCTATTCAATGGTGGGATGTTTGCCGAAGAGCTGCTTGGCCAGAGAGAGAGGAATGCATATCTTCAATTACTCTCAGGAGAAAAGGAACTGCAGAAGCTGTTGAGGATACATCCTATAAACATGAGCATCTTGAAGCCCAAGAGTCAGAAAAGCCACGTGACTGTTCTCTCTTATACCTATCCAATTCTGAGGTGCAGATAAACTCTGGGAGGATACCTATCTGGCAGAAATCCAAGGTACATTTCTATACAATGAGTTTTCCTGGGTCTAATGAGCCAAGTAGCATAAAAGATCACATGAATGGGGAGATTGAGATAGAGAAAATACTTACTAATGAGGTGGAAATTAAGCGGAAGGATTTGCTTCCAGTTTTCGATCATTTTCGTGGGGTACAGTCTGATTGGCATGGCAGGAGCCATGCTGGAGCAAAAAGCTCTAGCCCAAGTTTAGGTTCTCATTGCGCTGGAATGAAGTATTCAGAAGGTGATATCATTTCAGATGTGGCTTATGCACCCATTGCCAAGTCTGTGGGTGACATTAAGATGGAAGAGAAGGATGGATCGGTTTTGTCCTCGCCAGTTATGAAAGAGAAGTCTTTCCAAGAATGGGCTTCGGTTTCTTCTAAACAATCTAGCACTGGACTTTCCCCAGTTGAAGGCAGTGATTTTACTAACAGCCCGTCAACGGTAACAATTTGCTCACTCTCCACCGATAGAACTATTTTAAGAGCGGTTCAGTCATCCAAATGTGGAGGGGCCAGTGAGGGCTCGAATACAAGTTCCAACCGTTCTGACTTGAGTATGAATATTCTTGATGAGGGACCAATGGGTGACTCATTTGATTACGAACCATTCTTTCAAGAAGAATATTGTAAAGCGATGGGTCTTAGTAACTGCCGTGACCCACCAGCTTTAACCGACGACATAGACAGTAGTGGTAGTCCTCATTACAGGGAGAAATGTGAGGAAGATGGGGACACTGATGACATGCTTGGTGGCATATTTGCTTTCTCTGAGGAAGTATTAAAGGGTAGTATTTCTTCACATGTCATAGTGTTCTGTAATAATCGACTGATGGATTTCAAATGCCTCAGAGAACAGTCTACTGGTTGTCATCGTCGTTGTTGTGTTAGAGCGTCTATCCTAATTAATAAAATTGGGCTTGTTGGATTTCGATGAGTACAATGCTACTGACAGATAGAAGTGATATGTTATTGATGGTAGCACTGGTGGGACTGGAGCTGCTGGAAGAATTGACACTCTAGGAATTAAAGCTATATTACAACCCATCTTTACAATGAAGGAACCAAGGTCGGTCAAAT
Coding sequence (CDS)
ATGAAGAGCTACGCTAAGGTTAATAGCAACAACAGTAGCACCACTAACAAGAGCGCCAACGGCTTTCTTCCGAATTCATTGAAATTTATTTCGTCCTGTATTAAAACTGCTTCTTCCGGTGTCCGCTCAGCCAGTGCTACCGTTGCTGCCTCCATCTCCGGCGATGCTCACGATCACAAGGATCAGGTATTATGGGCTGGATTCGACAGACTTGAGCTCAGTCCATCCTTCTTCAAACATGTGCTTTTAGTTGGTTATACAAATGGCTTTCAAGTTCTTGACGTTGAAGATGCTCCCAACGTCAGCGAACTGGTTTCAAGACGGGATGATCCAGCCACATTCTTGCAGATGCAGCCTCTTCCGGCTGAGTCAGCTGCTGGTCAGGAAGGCTTTGGAGCATCACACCCAATTCTTTTGGTTGTCGCATGTGATGAGACCCAGAGTTCAGGTCTGATGCAAAGTGGCAGAAATGGGTTGGTGAGAGATGGATATCCTAATGGTCATTCAGAGAACATTACCCTCTCCCCTACGGCTGTTAGGTTTTACTCATTAAAATCTCGCAGTTATGTTCATGTTCTGAGATTTCGCTCAACTGTGTACATGATTAGATGCAGCCCCAAAATTGTGGCTGTTGGTCTTGCATCACAAATTTATTGCTTTGATGCTCTCACCCTTGAGAGTAAATTTAGTGTTCTCACTTACCCAGTTCCACAATTGGGTGGCCAAGGACCAACTGGGGTTAATATTGGCTATGGACCTATGGCTGTGGGTCCTAGATGGTTAGCTTATGCTTCCAACAATCCTTTGCAGTCCAATACTGGCCGTTTAAGCCCACAAAGTCCTACACCTCCTGGTGTAAGCCCATCAACATCACCTAGCAGTGGAAGTTTGGTGGCTCGATATGCCATGGAATCTAGCAAGCATTTGGCTGCTGGGCTAATTAATTTGGGTGACAAGGGTTATAAAACATTGTCTAAATACTATCAAGAGTTTGTACCTGATGGTTCCAATTCTCCACTATCATCAAATTCAAGTCGAAAAGTTGGCCGGCTGGCATCAACAGAAACGGATGCTGATGGAATGGTTGTTGTGAAAGATTTTGTCTCTAAAGCTGTTGTATCACAATTTAAGGCTCACTCAAGTCCAATTTCTGCACTTTGTTTTGATCCAAGCGGGACCCTTCTAGTTACTGCCTCAACCCATGGTAGCAATATTAACATTTTTAGGATTATGCTATCCCGCCTACAAAATGGATCTGGTACTCACAGCTATGATTGGAGTTCCTCTCATGTGCACCTGTACAAGCTTCATCGTGGCATGACATCAGCTGTAATACAAGATATTTGTTTTAGTCACTATAGTCAATGGATAGCTATTGTCTCTTCCCGGGGAACATGCCATATTTTTGCTCTTTCACCTTTTGGAGGTGAAACTGTTCTTCAAATGCACAATTCTTTAGTTGATGGGCCTAATCCTTTACCAGCTTCATGTGTCCCTTGGTGGTCAACTTCATCTTTTATCACAAACCAGCAATCCCTTTCTCCTTCTCCTCCTCCTACTGTCACTCTTTCTGTGGTTAGCAGAATTAAGAATTGTAATTCAGGTTGGCTTAATACTGTCAGTATGTCAGCTGTTTCGGCATCTGGAAAGGTTTCCATTCCATCAGGTGCTGTTTCTGCTGTTTTCCATCGTTGCACACCTCAGAATCTGCAATCTCCTCAATTAAGTTCGAATACTTTGGAACATCTATTGGTGTTTACTCCTTCTGGCCATGTGATTCAACATAAACTGCTTCCACCAATGGGGGGAGAATGTGGTGAAACTATTTTGAGAAGCCCAAATGCTTCAATGCAGATGAAAGATGAGGAATTGCGAGTTAAAGTTGAACCTATTCAATGGTGGGATGTTTGCCGAAGAGCTGCTTGGCCAGAGAGAGAGGAATGCATATCTTCAATTACTCTCAGGAGAAAAGGAACTGCAGAAGCTGTTGAGGATACATCCTATAAACATGAGCATCTTGAAGCCCAAGAGTCAGAAAAGCCACGTGACTGTTCTCTCTTATACCTATCCAATTCTGAGGTGCAGATAAACTCTGGGAGGATACCTATCTGGCAGAAATCCAAGGTACATTTCTATACAATGAGTTTTCCTGGGTCTAATGAGCCAAGTAGCATAAAAGATCACATGAATGGGGAGATTGAGATAGAGAAAATACTTACTAATGAGGTGGAAATTAAGCGGAAGGATTTGCTTCCAGTTTTCGATCATTTTCGTGGGGTACAGTCTGATTGGCATGGCAGGAGCCATGCTGGAGCAAAAAGCTCTAGCCCAAGTTTAGGTTCTCATTGCGCTGGAATGAAGTATTCAGAAGGTGATATCATTTCAGATGTGGCTTATGCACCCATTGCCAAGTCTGTGGGTGACATTAAGATGGAAGAGAAGGATGGATCGGTTTTGTCCTCGCCAGTTATGAAAGAGAAGTCTTTCCAAGAATGGGCTTCGGTTTCTTCTAAACAATCTAGCACTGGACTTTCCCCAGTTGAAGGCAGTGATTTTACTAACAGCCCGTCAACGGTAACAATTTGCTCACTCTCCACCGATAGAACTATTTTAAGAGCGGTTCAGTCATCCAAATGTGGAGGGGCCAGTGAGGGCTCGAATACAAGTTCCAACCGTTCTGACTTGAGTATGAATATTCTTGATGAGGGACCAATGGGTGACTCATTTGATTACGAACCATTCTTTCAAGAAGAATATTGTAAAGCGATGGGTCTTAGTAACTGCCGTGACCCACCAGCTTTAACCGACGACATAGACAGTAGTGGTAGTCCTCATTACAGGGAGAAATGTGAGGAAGATGGGGACACTGATGACATGCTTGGTGGCATATTTGCTTTCTCTGAGGAAGTATTAAAGGGTAGTATTTCTTCACATGTCATAGTGTTCTGTAATAATCGACTGATGGATTTCAAATGCCTCAGAGAACAGTCTACTGGTTGTCATCGTCGTTGTTGTGTTAGAGCGTCTATCCTAATTAATAAAATTGGGCTTGTTGGATTTCGATGA
Protein sequence
MKSYAKVNSNNSSTTNKSANGFLPNSLKFISSCIKTASSGVRSASATVAASISGDAHDHKDQVLWAGFDRLELSPSFFKHVLLVGYTNGFQVLDVEDAPNVSELVSRRDDPATFLQMQPLPAESAAGQEGFGASHPILLVVACDETQSSGLMQSGRNGLVRDGYPNGHSENITLSPTAVRFYSLKSRSYVHVLRFRSTVYMIRCSPKIVAVGLASQIYCFDALTLESKFSVLTYPVPQLGGQGPTGVNIGYGPMAVGPRWLAYASNNPLQSNTGRLSPQSPTPPGVSPSTSPSSGSLVARYAMESSKHLAAGLINLGDKGYKTLSKYYQEFVPDGSNSPLSSNSSRKVGRLASTETDADGMVVVKDFVSKAVVSQFKAHSSPISALCFDPSGTLLVTASTHGSNINIFRIMLSRLQNGSGTHSYDWSSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFALSPFGGETVLQMHNSLVDGPNPLPASCVPWWSTSSFITNQQSLSPSPPPTVTLSVVSRIKNCNSGWLNTVSMSAVSASGKVSIPSGAVSAVFHRCTPQNLQSPQLSSNTLEHLLVFTPSGHVIQHKLLPPMGGECGETILRSPNASMQMKDEELRVKVEPIQWWDVCRRAAWPEREECISSITLRRKGTAEAVEDTSYKHEHLEAQESEKPRDCSLLYLSNSEVQINSGRIPIWQKSKVHFYTMSFPGSNEPSSIKDHMNGEIEIEKILTNEVEIKRKDLLPVFDHFRGVQSDWHGRSHAGAKSSSPSLGSHCAGMKYSEGDIISDVAYAPIAKSVGDIKMEEKDGSVLSSPVMKEKSFQEWASVSSKQSSTGLSPVEGSDFTNSPSTVTICSLSTDRTILRAVQSSKCGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKAMGLSNCRDPPALTDDIDSSGSPHYREKCEEDGDTDDMLGGIFAFSEEVLKGSISSHVIVFCNNRLMDFKCLREQSTGCHRRCCVRASILINKIGLVGFR
Homology
BLAST of CmaCh11G011140 vs. ExPASy Swiss-Prot
Match:
Q8H1Q5 (Autophagy-related protein 18h OS=Arabidopsis thaliana OX=3702 GN=ATG18H PE=2 SV=1)
HSP 1 Score: 945.3 bits (2442), Expect = 5.8e-274
Identity = 545/980 (55.61%), Postives = 680/980 (69.39%), Query Frame = 0
Query: 1 MKSYAKVNSNN-----SSTTNKSANGFLPNSLKFISSCIKTASSGVRSASATVAASISGD 60
MKS +KVN NN + T N NGFLPNSLKFIS+CI+TASSGVRSASA+VAAS+S D
Sbjct: 1 MKSNSKVNINNNGDNHNQTKNNGTNGFLPNSLKFISTCIRTASSGVRSASASVAASLSSD 60
Query: 61 AHDHKDQVLWAGFDRLELSPSFFKHVLLVGYTNGFQVLDVEDAPNVSELVSRRDDPATFL 120
+H+ KDQVLW+ FDRL S S FK+VLL+GYTNGFQVLD++D+ +V+E VSRRDDP TFL
Sbjct: 61 SHELKDQVLWSSFDRLHTSESSFKNVLLLGYTNGFQVLDIDDSNDVTEFVSRRDDPVTFL 120
Query: 121 QMQPLPAESAAGQEGFGASHPILLVVACDETQSSGLMQSGRNGLVRDGYPNGHSENITLS 180
QMQPLPA+ G EGF +SHPILL VA DE + SG + + R+G VR NG+ + + LS
Sbjct: 121 QMQPLPAK-CDGVEGFRSSHPILLAVA-DEAKGSGPIVTSRDGSVR----NGYEDPLALS 180
Query: 181 PTAVRFYSLKSRSYVHVLRFRSTVYMIRCSPKIVAVGLASQIYCFDALTLESKFSVLTYP 240
PT VRFYSL+S +YVHVLRFRSTVYM+RCSP+IVAVGL SQIYCFDALTLE+KFSVL+YP
Sbjct: 181 PTVVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLGSQIYCFDALTLENKFSVLSYP 240
Query: 241 VPQLGGQGPTGVNIGYGPMAVGPRWLAYASNNPLQSNTGRLSPQSPTPPGVSPSTSPSSG 300
VPQLG QG +GVN+GYGPMAVG RWLAYASN+PL S+ GRLSPQ+ TPPGVSPSTSP++G
Sbjct: 241 VPQLGNQGISGVNVGYGPMAVGARWLAYASNSPLSSSIGRLSPQNVTPPGVSPSTSPNNG 300
Query: 301 SLVARYAMESSKHLAAGLINLGDKGYKTLSKYYQEFVPDGSNSPLSSNSSRKVGRLA--S 360
+LVARYAMESSKHLAAGL+NLGDKGYKT+SKY Q+ DG LSS+ RKVGR+ S
Sbjct: 301 NLVARYAMESSKHLAAGLLNLGDKGYKTISKYCQDLKHDGPGPSLSSSPGRKVGRVGSHS 360
Query: 361 TETDADGMVVVKDFVSKAVVSQFKAHSSPISALCFDPSGTLLVTASTHGSNINIFRIMLS 420
E+D G V+VKDF S+A+++QF+AH+SPISALCFDPSGTLLVTAS HG+NIN+FRIM +
Sbjct: 361 AESDVVGTVIVKDFESRAIIAQFRAHTSPISALCFDPSGTLLVTASIHGNNINVFRIMPT 420
Query: 421 RLQNGSGTHSYDWSSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFALSP 480
+NG G SYDWSSSHV LYKLHRGMTSAVIQDICFS YSQWIAIVSS+ TCHI+ LSP
Sbjct: 421 PTKNGPGAQSYDWSSSHVPLYKLHRGMTSAVIQDICFSSYSQWIAIVSSKSTCHIYVLSP 480
Query: 481 FGGETVLQMHNSLVDGPNPLPASCVPWWSTSSFITNQQSLSPSPPPTVTLSVVSRIKNCN 540
FGGE VL++ NS DGP P +PWWS+ SF+T S PP +VTLSVVSRIK CN
Sbjct: 481 FGGENVLEIRNSQFDGPTLAPTLSLPWWSSPSFMTTH--FSYPPPASVTLSVVSRIK-CN 540
Query: 541 SGWLNTVSMSAVSASGKVSIPSGAVSAVFHRCTPQNLQSPQLSSNTLEHLLVFTPSGHVI 600
+ + +A S GK + PSG ++AVFH+ PQ QS SS L++LLV+TPSGHV+
Sbjct: 541 NFF-----HAASSVVGKPTFPSGCLAAVFHQSVPQESQS---SSPALDYLLVYTPSGHVV 600
Query: 601 QHKLLPPMGGECGETILRSPNASMQMKDEELRVKVEPIQWWDVCRRAAWPEREECISSIT 660
Q+KL+P +GG+ E+ R+ S +EELRVKVEP+Q WDVCRRA WPEREE I +T
Sbjct: 601 QYKLIPSLGGDQAESNTRNGATSGLTSEEELRVKVEPVQCWDVCRRADWPEREENICGLT 660
Query: 661 LRRKGTAEAVEDTSYKHEHLEAQESEKPRDCSLLYLSNSEVQINSGRIPIWQKSKVHFYT 720
+ AE DTS ++++ KP + +YL+N+EV INSGR PIWQ S++ FY
Sbjct: 661 YGGRKNAELTVDTS------DSEDQTKPLEKHHVYLANAEVLINSGRKPIWQNSEISFYP 720
Query: 721 MSFPGSNEPSSIKDHM-NGEIEIEKILTNEVEIKRKDLLPVFDHFRGVQSDWHGRSHAGA 780
M +P ++ ++ H GE EI K+ NEV+I+RKDLLPV+D+F V + R +G
Sbjct: 721 M-YPPDSDGKNLNSHQGGGETEIGKVSANEVDIRRKDLLPVYDNFHSVYTSMRNRGFSGE 780
Query: 781 KSSSPSLGSHCAGMKYSEGDIISDVAYAPIAKSVGDIKMEEKDGSVLSSPVMKEKSFQEW 840
+ S S S +K E + + Y + EE+ GS + +
Sbjct: 781 RDSDSSSSSDPGQVK--EMHPFNGMVYP---------EDEERRGS--AHFALTPNQNPHT 840
Query: 841 ASVSSKQSSTGL-SPVEGSDFTNSPSTVTICSLSTDRTILRAVQSSKCGGASEGSNTSSN 900
V+ KQ + S V+ +D+ + + V L + ++ + G S SN SSN
Sbjct: 841 GIVTFKQPVVSISSAVKDTDYIDDDAHV----LPKNASLPAETKIENSSGISGDSNVSSN 900
Query: 901 RSDLSMNILD--EGPMGDSFDYEPFFQEEYCKAMGLSNCRDPPALTDDIDSSGSPHYREK 960
RSD+SMN D EGP+ S ++E FF+E +SN D S G K
Sbjct: 901 RSDMSMNAADEGEGPIDGSPNFEQFFEEV------VSNETVTETEHKDAPSDG------K 926
Query: 961 CEEDGDTDDMLGGIFAFSEE 970
++D D DDMLGG+FAFSEE
Sbjct: 961 LDDDED-DDMLGGVFAFSEE 926
BLAST of CmaCh11G011140 vs. ExPASy Swiss-Prot
Match:
Q8GUL1 (Autophagy-related protein 18g OS=Arabidopsis thaliana OX=3702 GN=ATG18G PE=2 SV=1)
HSP 1 Score: 783.9 bits (2023), Expect = 2.2e-225
Identity = 484/994 (48.69%), Postives = 609/994 (61.27%), Query Frame = 0
Query: 20 NGFLPNSLKFISSCIKTAS-------SGVRSASATVAASISGDAHDHKDQVLWAGFDRLE 79
+G LPNS K ISSC+KT S S VRSA A+VAASIS A D KDQV WAGF LE
Sbjct: 10 SGLLPNSFKIISSCLKTVSANATNVASSVRSAGASVAASISA-AEDDKDQVTWAGFGILE 69
Query: 80 LSPSFFKHVLLVGYTNGFQVLDVEDAPNVSELVSRRDDPATFLQMQPLPAESAAGQEGFG 139
L +HVLL+GY NGFQV DVEDA N +ELVS+R P +FLQMQPLPA S EGF
Sbjct: 70 LGQHVTRHVLLLGYQNGFQVFDVEDASNFNELVSKRGGPVSFLQMQPLPARS-GDHEGFW 129
Query: 140 ASHPILLVVACDETQSSGLMQS-GRNG-LVRDGYPNGHSENITLSPTAVRFYSLKSRSYV 199
SHP+LLVVA DET +GL S +NG L RDG + + + PT VRFYSL+S SYV
Sbjct: 130 NSHPLLLVVAGDETNGTGLGHSFSQNGSLARDGSSDSKAGDAINYPTTVRFYSLRSHSYV 189
Query: 200 HVLRFRSTVYMIRCSPKIVAVGLASQIYCFDALTLESKFSVLTYPVPQLGGQGPTGVNIG 259
+VLRFRS+V MIRCS ++VAVGLA+QIYC DALTLE+KFSVLTYPVPQ QG T VN+G
Sbjct: 190 YVLRFRSSVCMIRCSSRVVAVGLANQIYCVDALTLENKFSVLTYPVPQPVRQGTTRVNVG 249
Query: 260 YGPMAVGPRWLAYASNNPLQSNTGRLSPQSPT-PPGVSPSTSPSSGSLVARYAMESSKHL 319
YGPMAVGPRWLAYAS + + TGRLSPQ+ T P +SPS+S S +ARYAMESSK L
Sbjct: 250 YGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGGSSFMARYAMESSKQL 309
Query: 320 AAGLINLGDKGYKTLSKYYQEFVPDGSNSPLSSNSSRKVGRLASTETDADGMVVVKDFVS 379
A GLINLGD GYKTLSKY Q+ +PDGS SP S N+ KVG ++ ++ + GMV VKD VS
Sbjct: 310 ANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNAIWKVGGVSGSDAENAGMVAVKDLVS 369
Query: 380 KAVVSQFKAHSSPISALCFDPSGTLLVTASTHGSNINIFRIMLSRLQNGSGTHSYDWSSS 439
A+VSQFKAH+SPISALCFDPSGTLLVTAS G+NIN+F+IM SR N G SY+W SS
Sbjct: 370 GALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSRSHNAPGDLSYEWESS 429
Query: 440 HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFALSPFGGETVLQMHNSLVDG 499
HVHL+KLHRG+TSA++QDICFS SQW+AI+SS+GTCHIF L+ G + Q +
Sbjct: 430 HVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSSGSDAAFQPCEG--EE 489
Query: 500 PNPLPASCVPWWSTSSFITNQQSLSPSPPPTVTLSVVSRIKNCNSGWLNTVSMSAVSASG 559
P LPAS +PWW T S +NQQSL SPP V LSVVSRIK + GWLNTVS + +A+G
Sbjct: 490 PTRLPASSLPWWFTQSLSSNQQSL--SPPTAVALSVVSRIKYSSFGWLNTVSNATTAATG 549
Query: 560 KVSIPSGAVSAVFHRCTPQNLQSPQLSSNTLEHLLVFTPSGHVIQHKLLPPMGGECGETI 619
KV +PSGAV+AVFH+ +LQ +N LEH+LV+TPSGHV+QH+LLP + E E
Sbjct: 550 KVFVPSGAVAAVFHKSVTHDLQL-NSRTNALEHILVYTPSGHVVQHELLPSVCTESPENG 609
Query: 620 LRSPNAS-MQMKDEELRVKVEPIQWWDVCRRAAWPEREECISSITLRRKGTAEAVEDTSY 679
LR S +Q+++++LRVKVEPIQWWDVCRR+ W E EE + ++ E V +
Sbjct: 610 LRVQKTSHVQVQEDDLRVKVEPIQWWDVCRRSDWLETEERLPKSITEKQYDLETVSNHLT 669
Query: 680 KHE----------HLEAQE-----SEKPRDCSLLYLSNSEVQINSGRIPIWQKSKVHFYT 739
HE H + SEKP + S YLSN EV++ SG +P+WQ SK+ F+
Sbjct: 670 SHEDACLSLDMNSHFSEDKYLKSCSEKPPERSHCYLSNFEVKVTSGMLPVWQNSKISFHV 729
Query: 740 MSFPGSNEPSSIKDHMNGEIEIEKILTNEVEIKRKDLLPVFDHFRGVQSDWHGRSHAGAK 799
M P + + GE EIEK+ +E+EIK+K LLPVFDHF ++ R
Sbjct: 730 MDSPRDSSST------GGEFEIEKVPAHELEIKQKKLLPVFDHFHSTKATLEDRFSMKCY 789
Query: 800 SSSPSLGSHCAGMKYSEGDIISDVAYAPIAKSVGDIKMEEKDGSVLSSPVMKEKSFQEWA 859
+S + GSH G I D+ I K GS+ S+ +E S ++
Sbjct: 790 HTS-ATGSH-----QVNGKICQDI-----------INCHSKPGSIESAESSEEGSTKQME 849
Query: 860 SV-------SSKQSSTGLSPV-----------EGSDFTNSPSTVTICSLSTDRTILRAVQ 919
++ +S +SS L P + + P T + +L R
Sbjct: 850 NLHDSDHMSNSIKSSLPLYPTVNGIYKEIEKNNANGWMEKPVTAKLSTLKETR------- 909
Query: 920 SSKCGGASEGSNTSSNRSD-LSMNILDEG--PMGDSFDYEPFFQEEYCKAMGLSNCRDPP 967
+ G T +D ++ +L G PMG F EE+CKA+
Sbjct: 910 ------ITNGFTTPPILTDSVNEQMLSTGKPPMGFGF----ALHEEHCKAVADPKEEHLK 956
BLAST of CmaCh11G011140 vs. ExPASy Swiss-Prot
Match:
Q9FH32 (Autophagy-related protein 18f OS=Arabidopsis thaliana OX=3702 GN=ATG18F PE=2 SV=1)
HSP 1 Score: 365.5 bits (937), Expect = 1.9e-99
Identity = 271/776 (34.92%), Postives = 400/776 (51.55%), Query Frame = 0
Query: 7 VNSNNSSTTNKSANGFLP----NSLKFISSCIKTASSGVRSASATVAASISGDAHDHKDQ 66
+ N ++ KS +G + +S + +S+C+K SSG + + + ++ S H DQ
Sbjct: 1 MKKNGDGSSPKSPDGVVSRSARSSFRALSNCLKVISSGASTVARSAVSAASSAVESHHDQ 60
Query: 67 VLWAGFDRLELSPSFFKHVLLVGYTNGFQVLDVEDAPNVSELVSRRDDPATFLQMQPLPA 126
VLWAGFD L+ + VLL+ + +GFQV DVED NV +VS D A F+QM P
Sbjct: 61 VLWAGFDNLQKEDGDTRRVLLLAFKSGFQVWDVEDTENVHVIVSAHDGQAFFMQMLLNPI 120
Query: 127 ESAAGQEGFGASHPILLVVACDETQSSGLMQSGRNGLVRDGYPNGHSENITLSPTAVRFY 186
S + F S P+L V C + S + N SE + +PT V Y
Sbjct: 121 NSGVLDDRFYKSRPLLAV--CGDYSSKKISSD-----------NPGSETVA-TPTNVYVY 180
Query: 187 SLKSRSYVHVLRFRSTVYMIRCSPKIVAVGLASQIYCFDALTLESKFSVLTYPVPQLGGQ 246
SLKS+SYVH L+FR+T+Y +RC +IVAV A+QI CFDA TLE + ++T + G
Sbjct: 181 SLKSQSYVHTLKFRATIYSVRCCSRIVAVLQAAQIDCFDAATLEMDYRIVTNSI-VCGSL 240
Query: 247 GPTGVNIGYGPMAVGPRWLAYASNNPLQSNTGRLSPQSPTPPGVSPSTSPSSGSLVARYA 306
G +GYGP+AVGPRW+AY+ + S++ + + VS STS S VA++A
Sbjct: 241 G-----VGYGPLAVGPRWIAYSGSRIATSSSAIFTSEI-----VSLSTSSPS---VAQFA 300
Query: 307 MESSKHLAAGLINLGDKGYKTLSKYYQEFVPDGSNSPLSSNSSRKVGRLASTETDADGMV 366
+SSK LA+G+ NLGDKGY++L+KY E +P N + VG + ++ GMV
Sbjct: 301 RDSSKQLASGIANLGDKGYRSLTKYCSEVLP---NPYIPGLKGIGVGNEKVADAESIGMV 360
Query: 367 VVKDFVSKAVVSQFKAHSSPISALCFDPSGTLLVTASTHGSNINIFRIMLSRLQNGSGTH 426
+VKD +K+V++QFKAH SPISALCFD SG LLVTAS G NIN+FRIM + T
Sbjct: 361 IVKDITNKSVITQFKAHKSPISALCFDQSGLLLVTASIQGHNINVFRIMPT-----ISTS 420
Query: 427 SYDWSSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFALSPFGGETVLQM 486
+++ HL++L RG T+AVIQDICFS S I + SSRGT H+F ++P
Sbjct: 421 RAVKTTTFAHLFRLQRGFTNAVIQDICFSKDSNLIVVGSSRGTSHLFEINP--------- 480
Query: 487 HNSLVDGPNPLPASCVPWWSTSSFITNQQSLSPSPPPTVTLSVVSRIKNCN-SGWLNTVS 546
+G P+P +S +SRI++ N SGW+ TVS
Sbjct: 481 ---EKEGDAPVP----------------------------MSAISRIRSGNSSGWIGTVS 540
Query: 547 MSAVSASGKV--SIPSGAVSAVFHRC---TPQNLQSPQLSSNTLEHLLVFTPSGHVIQHK 606
+A +A+G V S+P G V++ F C + N + +LLVF PSG + Q+
Sbjct: 541 GAASAAAGMVAGSVP-GTVTSTFCYCDEKSNNNYYGSVADMCSKTNLLVFAPSGCMTQYA 600
Query: 607 LLPPMGGECGETILRSPNASMQMKDEELRVKVEPIQWWDVCRRAAWPEREECIS------ 666
L G ET + S + E ++ V+PI+ W + + + E + S
Sbjct: 601 LREHQVGVGHETAAMTGFDSESGLETEGKLAVDPIRRWSMIQNQSRRETHDPHSDIYGGG 660
Query: 667 -SITLRRKGTAEAVEDTSYKHE-HLEAQESEKPRDCSLLYLSNSEVQIN--SGRIPIWQK 726
S+ + K E V S + + + + + D LY+ +E Q ++P+W +
Sbjct: 661 TSVDSKSKVFPEVVRKQSVEEAWKVSKKGTTRVVDKRHLYIYEAEQQQTHLPTQLPLWAR 696
Query: 727 SKVHFYTMSFPGSNEPSSIKDHMNGEIEIEKILTNEVEIKRKDLLPVFDHFRGVQS 763
K F + N I E+EIE I T +E + +DL+PV+ + + +S
Sbjct: 721 RKFRFQELVL---NRGEEISGGGGREMEIEGIQTRTIEARTRDLVPVWGYLQSPRS 696
BLAST of CmaCh11G011140 vs. ExPASy Swiss-Prot
Match:
Q8CCN5 (BCAS3 microtubule associated cell migration factor OS=Mus musculus OX=10090 GN=Bcas3 PE=1 SV=2)
HSP 1 Score: 167.5 bits (423), Expect = 7.6e-40
Identity = 131/455 (28.79%), Postives = 209/455 (45.93%), Query Frame = 0
Query: 58 DHKDQVLWAGFDRLEL---SPSFFKH-----------VLLVGYTNGFQVLDVEDAPNVSE 117
+ K++++W F+ +L S + H ++++GY++G QV + + E
Sbjct: 55 EEKEKIVWVRFENADLNDTSRNLEFHELHSTGNEPPLLVMIGYSDGMQVWGIPISGEAQE 114
Query: 118 LVSRRDDPATFLQMQPLPAESAAGQEGFGASHPILLVVACDETQSSGLMQSGRNGLVRDG 177
L S R P ++ P P A + F P+L V C SSG
Sbjct: 115 LFSVRHGPVRAARILPAPQLGAQKCDNFAEKRPLLGV--CKSIGSSG------------- 174
Query: 178 YPNGHSENITLSPTAVRFYSLKSRSYVHVLRFRSTVYMIRCSPKIVAVGLASQIYCFDAL 237
T V YSL++ V ++F++ +Y + C+ +I+ V L +I FD+
Sbjct: 175 --------TTPPYCCVDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDSC 234
Query: 238 TLESKFSVLT-YPVPQLGGQGPTGVNIGYGPMAVGPRWLAYASNNPLQSNTGRLSPQSPT 297
T KF V + YP P GP P+A+G RWLAYA N ++ + R
Sbjct: 235 TFTKKFFVTSCYPCP-----GP-----NMNPIALGSRWLAYAENKLIRCHQSR------- 294
Query: 298 PPGVSPSTSPSSGSLVARY---AMESSKHLAAGLINLGDKGYKTLSKYYQEFVPDGSNSP 357
+ G + Y + ++K L +GL +G K L+ V + +
Sbjct: 295 --------GGACGDNIQSYTATVLSAAKTLKSGLTMVG-KVVTQLTGTLPSGVTE-DDVA 354
Query: 358 LSSNSSRK-----VGRLASTETDADGMVVV-KDFVSKAVVSQFKAHSSPISALCFDPSGT 417
L NS R + + TET +G V+V +D S +V+ F AH P+ + F+ SG
Sbjct: 355 LHCNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFNTSGM 414
Query: 418 LLVTASTHGSNINIFRIMLSRLQNGSGTHSYDWSSSHV---HLYKLHRGMTSAVIQDICF 477
LLVT T G + ++F+I+ ++ WSSS HLY LHRG T A +QDICF
Sbjct: 415 LLVTTDTLGHDFHVFQIL-----------THPWSSSQCAVHHLYTLHRGETEAKVQDICF 448
Query: 478 SHYSQWIAIVSSRGTCHIFALSPFGGETVLQMHNS 486
SH +W+ + + RGT H+F ++P+GG+ ++ H S
Sbjct: 475 SHDCRWVVVSTLRGTSHVFPINPYGGQPCVRTHMS 448
BLAST of CmaCh11G011140 vs. ExPASy Swiss-Prot
Match:
Q9H6U6 (BCAS3 microtubule associated cell migration factor OS=Homo sapiens OX=9606 GN=BCAS3 PE=1 SV=3)
HSP 1 Score: 165.6 bits (418), Expect = 2.9e-39
Identity = 130/459 (28.32%), Postives = 211/459 (45.97%), Query Frame = 0
Query: 58 DHKDQVLWAGFDRLELSPSF----FKHV----------LLVGYTNGFQVLDVEDAPNVSE 117
+ K++++W F+ +L+ + F + +++GY++G QV + + E
Sbjct: 55 EEKEKIVWVRFENADLNDTSRNLEFHEIHSTGNEPPLLIMIGYSDGMQVWSIPISGEAQE 114
Query: 118 LVSRRDDPATFLQMQPLPAESAAGQEGFGASHPILLVVACDETQSSGLMQSGRNGLVRDG 177
L S R P ++ P P A + F P+L V C SSG
Sbjct: 115 LFSVRHGPIRAARILPAPQFGAQKCDNFAEKRPLLGV--CKSIGSSG------------- 174
Query: 178 YPNGHSENITLSP-TAVRFYSLKSRSYVHVLRFRSTVYMIRCSPKIVAVGLASQIYCFDA 237
T P V YSL++ V ++F++ +Y + C+ +I+ V L +I FD+
Sbjct: 175 ---------TSPPYCCVDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDS 234
Query: 238 LTLESKFSVLT-YPVPQLGGQGPTGVNIGYGPMAVGPRWLAYASNNPLQSNTGRLSP--- 297
T KF V + YP P GP P+A+G RWLAYA N ++ + R
Sbjct: 235 CTFTKKFFVTSCYPCP-----GP-----NMNPIALGSRWLAYAENKLIRCHQSRGGACGD 294
Query: 298 --QSPTPPGVSPSTSPSSG-SLVARYAMESSKHLAAGLINLGDKGYKTLSKYYQEFVPDG 357
QS T +S + + SG ++V + + + L +G+
Sbjct: 295 NIQSYTATVISAAKTLKSGLTMVGKVVTQLTGTLPSGVTE-------------------- 354
Query: 358 SNSPLSSNSSRK-----VGRLASTETDADGMVVV-KDFVSKAVVSQFKAHSSPISALCFD 417
+ + SNS R + + TET +G V+V +D S +V+ F AH P+ + F+
Sbjct: 355 DDVAIHSNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAHEKPVCCMAFN 414
Query: 418 PSGTLLVTASTHGSNINIFRIMLSRLQNGSGTHSYDWSSSHV---HLYKLHRGMTSAVIQ 477
SG LLVT T G + ++F+I+ ++ WSSS HLY LHRG T A +Q
Sbjct: 415 TSGMLLVTTDTLGHDFHVFQIL-----------THPWSSSQCAVHHLYTLHRGETEAKVQ 448
Query: 478 DICFSHYSQWIAIVSSRGTCHIFALSPFGGETVLQMHNS 486
DICFSH +W+ + + RGT H+F ++P+GG+ ++ H S
Sbjct: 475 DICFSHDCRWVVVSTLRGTSHVFPINPYGGQPCVRTHMS 448
BLAST of CmaCh11G011140 vs. TAIR 10
Match:
AT1G54710.1 (homolog of yeast autophagy 18 (ATG18) H )
HSP 1 Score: 945.3 bits (2442), Expect = 4.1e-275
Identity = 545/980 (55.61%), Postives = 680/980 (69.39%), Query Frame = 0
Query: 1 MKSYAKVNSNN-----SSTTNKSANGFLPNSLKFISSCIKTASSGVRSASATVAASISGD 60
MKS +KVN NN + T N NGFLPNSLKFIS+CI+TASSGVRSASA+VAAS+S D
Sbjct: 1 MKSNSKVNINNNGDNHNQTKNNGTNGFLPNSLKFISTCIRTASSGVRSASASVAASLSSD 60
Query: 61 AHDHKDQVLWAGFDRLELSPSFFKHVLLVGYTNGFQVLDVEDAPNVSELVSRRDDPATFL 120
+H+ KDQVLW+ FDRL S S FK+VLL+GYTNGFQVLD++D+ +V+E VSRRDDP TFL
Sbjct: 61 SHELKDQVLWSSFDRLHTSESSFKNVLLLGYTNGFQVLDIDDSNDVTEFVSRRDDPVTFL 120
Query: 121 QMQPLPAESAAGQEGFGASHPILLVVACDETQSSGLMQSGRNGLVRDGYPNGHSENITLS 180
QMQPLPA+ G EGF +SHPILL VA DE + SG + + R+G VR NG+ + + LS
Sbjct: 121 QMQPLPAK-CDGVEGFRSSHPILLAVA-DEAKGSGPIVTSRDGSVR----NGYEDPLALS 180
Query: 181 PTAVRFYSLKSRSYVHVLRFRSTVYMIRCSPKIVAVGLASQIYCFDALTLESKFSVLTYP 240
PT VRFYSL+S +YVHVLRFRSTVYM+RCSP+IVAVGL SQIYCFDALTLE+KFSVL+YP
Sbjct: 181 PTVVRFYSLRSHNYVHVLRFRSTVYMVRCSPRIVAVGLGSQIYCFDALTLENKFSVLSYP 240
Query: 241 VPQLGGQGPTGVNIGYGPMAVGPRWLAYASNNPLQSNTGRLSPQSPTPPGVSPSTSPSSG 300
VPQLG QG +GVN+GYGPMAVG RWLAYASN+PL S+ GRLSPQ+ TPPGVSPSTSP++G
Sbjct: 241 VPQLGNQGISGVNVGYGPMAVGARWLAYASNSPLSSSIGRLSPQNVTPPGVSPSTSPNNG 300
Query: 301 SLVARYAMESSKHLAAGLINLGDKGYKTLSKYYQEFVPDGSNSPLSSNSSRKVGRLA--S 360
+LVARYAMESSKHLAAGL+NLGDKGYKT+SKY Q+ DG LSS+ RKVGR+ S
Sbjct: 301 NLVARYAMESSKHLAAGLLNLGDKGYKTISKYCQDLKHDGPGPSLSSSPGRKVGRVGSHS 360
Query: 361 TETDADGMVVVKDFVSKAVVSQFKAHSSPISALCFDPSGTLLVTASTHGSNINIFRIMLS 420
E+D G V+VKDF S+A+++QF+AH+SPISALCFDPSGTLLVTAS HG+NIN+FRIM +
Sbjct: 361 AESDVVGTVIVKDFESRAIIAQFRAHTSPISALCFDPSGTLLVTASIHGNNINVFRIMPT 420
Query: 421 RLQNGSGTHSYDWSSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFALSP 480
+NG G SYDWSSSHV LYKLHRGMTSAVIQDICFS YSQWIAIVSS+ TCHI+ LSP
Sbjct: 421 PTKNGPGAQSYDWSSSHVPLYKLHRGMTSAVIQDICFSSYSQWIAIVSSKSTCHIYVLSP 480
Query: 481 FGGETVLQMHNSLVDGPNPLPASCVPWWSTSSFITNQQSLSPSPPPTVTLSVVSRIKNCN 540
FGGE VL++ NS DGP P +PWWS+ SF+T S PP +VTLSVVSRIK CN
Sbjct: 481 FGGENVLEIRNSQFDGPTLAPTLSLPWWSSPSFMTTH--FSYPPPASVTLSVVSRIK-CN 540
Query: 541 SGWLNTVSMSAVSASGKVSIPSGAVSAVFHRCTPQNLQSPQLSSNTLEHLLVFTPSGHVI 600
+ + +A S GK + PSG ++AVFH+ PQ QS SS L++LLV+TPSGHV+
Sbjct: 541 NFF-----HAASSVVGKPTFPSGCLAAVFHQSVPQESQS---SSPALDYLLVYTPSGHVV 600
Query: 601 QHKLLPPMGGECGETILRSPNASMQMKDEELRVKVEPIQWWDVCRRAAWPEREECISSIT 660
Q+KL+P +GG+ E+ R+ S +EELRVKVEP+Q WDVCRRA WPEREE I +T
Sbjct: 601 QYKLIPSLGGDQAESNTRNGATSGLTSEEELRVKVEPVQCWDVCRRADWPEREENICGLT 660
Query: 661 LRRKGTAEAVEDTSYKHEHLEAQESEKPRDCSLLYLSNSEVQINSGRIPIWQKSKVHFYT 720
+ AE DTS ++++ KP + +YL+N+EV INSGR PIWQ S++ FY
Sbjct: 661 YGGRKNAELTVDTS------DSEDQTKPLEKHHVYLANAEVLINSGRKPIWQNSEISFYP 720
Query: 721 MSFPGSNEPSSIKDHM-NGEIEIEKILTNEVEIKRKDLLPVFDHFRGVQSDWHGRSHAGA 780
M +P ++ ++ H GE EI K+ NEV+I+RKDLLPV+D+F V + R +G
Sbjct: 721 M-YPPDSDGKNLNSHQGGGETEIGKVSANEVDIRRKDLLPVYDNFHSVYTSMRNRGFSGE 780
Query: 781 KSSSPSLGSHCAGMKYSEGDIISDVAYAPIAKSVGDIKMEEKDGSVLSSPVMKEKSFQEW 840
+ S S S +K E + + Y + EE+ GS + +
Sbjct: 781 RDSDSSSSSDPGQVK--EMHPFNGMVYP---------EDEERRGS--AHFALTPNQNPHT 840
Query: 841 ASVSSKQSSTGL-SPVEGSDFTNSPSTVTICSLSTDRTILRAVQSSKCGGASEGSNTSSN 900
V+ KQ + S V+ +D+ + + V L + ++ + G S SN SSN
Sbjct: 841 GIVTFKQPVVSISSAVKDTDYIDDDAHV----LPKNASLPAETKIENSSGISGDSNVSSN 900
Query: 901 RSDLSMNILD--EGPMGDSFDYEPFFQEEYCKAMGLSNCRDPPALTDDIDSSGSPHYREK 960
RSD+SMN D EGP+ S ++E FF+E +SN D S G K
Sbjct: 901 RSDMSMNAADEGEGPIDGSPNFEQFFEEV------VSNETVTETEHKDAPSDG------K 926
Query: 961 CEEDGDTDDMLGGIFAFSEE 970
++D D DDMLGG+FAFSEE
Sbjct: 961 LDDDED-DDMLGGVFAFSEE 926
BLAST of CmaCh11G011140 vs. TAIR 10
Match:
AT1G03380.1 (homolog of yeast autophagy 18 (ATG18) G )
HSP 1 Score: 783.9 bits (2023), Expect = 1.6e-226
Identity = 484/994 (48.69%), Postives = 609/994 (61.27%), Query Frame = 0
Query: 20 NGFLPNSLKFISSCIKTAS-------SGVRSASATVAASISGDAHDHKDQVLWAGFDRLE 79
+G LPNS K ISSC+KT S S VRSA A+VAASIS A D KDQV WAGF LE
Sbjct: 10 SGLLPNSFKIISSCLKTVSANATNVASSVRSAGASVAASISA-AEDDKDQVTWAGFGILE 69
Query: 80 LSPSFFKHVLLVGYTNGFQVLDVEDAPNVSELVSRRDDPATFLQMQPLPAESAAGQEGFG 139
L +HVLL+GY NGFQV DVEDA N +ELVS+R P +FLQMQPLPA S EGF
Sbjct: 70 LGQHVTRHVLLLGYQNGFQVFDVEDASNFNELVSKRGGPVSFLQMQPLPARS-GDHEGFW 129
Query: 140 ASHPILLVVACDETQSSGLMQS-GRNG-LVRDGYPNGHSENITLSPTAVRFYSLKSRSYV 199
SHP+LLVVA DET +GL S +NG L RDG + + + PT VRFYSL+S SYV
Sbjct: 130 NSHPLLLVVAGDETNGTGLGHSFSQNGSLARDGSSDSKAGDAINYPTTVRFYSLRSHSYV 189
Query: 200 HVLRFRSTVYMIRCSPKIVAVGLASQIYCFDALTLESKFSVLTYPVPQLGGQGPTGVNIG 259
+VLRFRS+V MIRCS ++VAVGLA+QIYC DALTLE+KFSVLTYPVPQ QG T VN+G
Sbjct: 190 YVLRFRSSVCMIRCSSRVVAVGLANQIYCVDALTLENKFSVLTYPVPQPVRQGTTRVNVG 249
Query: 260 YGPMAVGPRWLAYASNNPLQSNTGRLSPQSPT-PPGVSPSTSPSSGSLVARYAMESSKHL 319
YGPMAVGPRWLAYAS + + TGRLSPQ+ T P +SPS+S S +ARYAMESSK L
Sbjct: 250 YGPMAVGPRWLAYASKSSMTMKTGRLSPQTFTSSPSLSPSSSSGGSSFMARYAMESSKQL 309
Query: 320 AAGLINLGDKGYKTLSKYYQEFVPDGSNSPLSSNSSRKVGRLASTETDADGMVVVKDFVS 379
A GLINLGD GYKTLSKY Q+ +PDGS SP S N+ KVG ++ ++ + GMV VKD VS
Sbjct: 310 ANGLINLGDMGYKTLSKYCQDMLPDGSTSPASPNAIWKVGGVSGSDAENAGMVAVKDLVS 369
Query: 380 KAVVSQFKAHSSPISALCFDPSGTLLVTASTHGSNINIFRIMLSRLQNGSGTHSYDWSSS 439
A+VSQFKAH+SPISALCFDPSGTLLVTAS G+NIN+F+IM SR N G SY+W SS
Sbjct: 370 GALVSQFKAHTSPISALCFDPSGTLLVTASVCGNNINVFQIMPSRSHNAPGDLSYEWESS 429
Query: 440 HVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFALSPFGGETVLQMHNSLVDG 499
HVHL+KLHRG+TSA++QDICFS SQW+AI+SS+GTCHIF L+ G + Q +
Sbjct: 430 HVHLFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSSGSDAAFQPCEG--EE 489
Query: 500 PNPLPASCVPWWSTSSFITNQQSLSPSPPPTVTLSVVSRIKNCNSGWLNTVSMSAVSASG 559
P LPAS +PWW T S +NQQSL SPP V LSVVSRIK + GWLNTVS + +A+G
Sbjct: 490 PTRLPASSLPWWFTQSLSSNQQSL--SPPTAVALSVVSRIKYSSFGWLNTVSNATTAATG 549
Query: 560 KVSIPSGAVSAVFHRCTPQNLQSPQLSSNTLEHLLVFTPSGHVIQHKLLPPMGGECGETI 619
KV +PSGAV+AVFH+ +LQ +N LEH+LV+TPSGHV+QH+LLP + E E
Sbjct: 550 KVFVPSGAVAAVFHKSVTHDLQL-NSRTNALEHILVYTPSGHVVQHELLPSVCTESPENG 609
Query: 620 LRSPNAS-MQMKDEELRVKVEPIQWWDVCRRAAWPEREECISSITLRRKGTAEAVEDTSY 679
LR S +Q+++++LRVKVEPIQWWDVCRR+ W E EE + ++ E V +
Sbjct: 610 LRVQKTSHVQVQEDDLRVKVEPIQWWDVCRRSDWLETEERLPKSITEKQYDLETVSNHLT 669
Query: 680 KHE----------HLEAQE-----SEKPRDCSLLYLSNSEVQINSGRIPIWQKSKVHFYT 739
HE H + SEKP + S YLSN EV++ SG +P+WQ SK+ F+
Sbjct: 670 SHEDACLSLDMNSHFSEDKYLKSCSEKPPERSHCYLSNFEVKVTSGMLPVWQNSKISFHV 729
Query: 740 MSFPGSNEPSSIKDHMNGEIEIEKILTNEVEIKRKDLLPVFDHFRGVQSDWHGRSHAGAK 799
M P + + GE EIEK+ +E+EIK+K LLPVFDHF ++ R
Sbjct: 730 MDSPRDSSST------GGEFEIEKVPAHELEIKQKKLLPVFDHFHSTKATLEDRFSMKCY 789
Query: 800 SSSPSLGSHCAGMKYSEGDIISDVAYAPIAKSVGDIKMEEKDGSVLSSPVMKEKSFQEWA 859
+S + GSH G I D+ I K GS+ S+ +E S ++
Sbjct: 790 HTS-ATGSH-----QVNGKICQDI-----------INCHSKPGSIESAESSEEGSTKQME 849
Query: 860 SV-------SSKQSSTGLSPV-----------EGSDFTNSPSTVTICSLSTDRTILRAVQ 919
++ +S +SS L P + + P T + +L R
Sbjct: 850 NLHDSDHMSNSIKSSLPLYPTVNGIYKEIEKNNANGWMEKPVTAKLSTLKETR------- 909
Query: 920 SSKCGGASEGSNTSSNRSD-LSMNILDEG--PMGDSFDYEPFFQEEYCKAMGLSNCRDPP 967
+ G T +D ++ +L G PMG F EE+CKA+
Sbjct: 910 ------ITNGFTTPPILTDSVNEQMLSTGKPPMGFGF----ALHEEHCKAVADPKEEHLK 956
BLAST of CmaCh11G011140 vs. TAIR 10
Match:
AT5G54730.1 (homolog of yeast autophagy 18 (ATG18) F )
HSP 1 Score: 365.5 bits (937), Expect = 1.4e-100
Identity = 271/776 (34.92%), Postives = 400/776 (51.55%), Query Frame = 0
Query: 7 VNSNNSSTTNKSANGFLP----NSLKFISSCIKTASSGVRSASATVAASISGDAHDHKDQ 66
+ N ++ KS +G + +S + +S+C+K SSG + + + ++ S H DQ
Sbjct: 1 MKKNGDGSSPKSPDGVVSRSARSSFRALSNCLKVISSGASTVARSAVSAASSAVESHHDQ 60
Query: 67 VLWAGFDRLELSPSFFKHVLLVGYTNGFQVLDVEDAPNVSELVSRRDDPATFLQMQPLPA 126
VLWAGFD L+ + VLL+ + +GFQV DVED NV +VS D A F+QM P
Sbjct: 61 VLWAGFDNLQKEDGDTRRVLLLAFKSGFQVWDVEDTENVHVIVSAHDGQAFFMQMLLNPI 120
Query: 127 ESAAGQEGFGASHPILLVVACDETQSSGLMQSGRNGLVRDGYPNGHSENITLSPTAVRFY 186
S + F S P+L V C + S + N SE + +PT V Y
Sbjct: 121 NSGVLDDRFYKSRPLLAV--CGDYSSKKISSD-----------NPGSETVA-TPTNVYVY 180
Query: 187 SLKSRSYVHVLRFRSTVYMIRCSPKIVAVGLASQIYCFDALTLESKFSVLTYPVPQLGGQ 246
SLKS+SYVH L+FR+T+Y +RC +IVAV A+QI CFDA TLE + ++T + G
Sbjct: 181 SLKSQSYVHTLKFRATIYSVRCCSRIVAVLQAAQIDCFDAATLEMDYRIVTNSI-VCGSL 240
Query: 247 GPTGVNIGYGPMAVGPRWLAYASNNPLQSNTGRLSPQSPTPPGVSPSTSPSSGSLVARYA 306
G +GYGP+AVGPRW+AY+ + S++ + + VS STS S VA++A
Sbjct: 241 G-----VGYGPLAVGPRWIAYSGSRIATSSSAIFTSEI-----VSLSTSSPS---VAQFA 300
Query: 307 MESSKHLAAGLINLGDKGYKTLSKYYQEFVPDGSNSPLSSNSSRKVGRLASTETDADGMV 366
+SSK LA+G+ NLGDKGY++L+KY E +P N + VG + ++ GMV
Sbjct: 301 RDSSKQLASGIANLGDKGYRSLTKYCSEVLP---NPYIPGLKGIGVGNEKVADAESIGMV 360
Query: 367 VVKDFVSKAVVSQFKAHSSPISALCFDPSGTLLVTASTHGSNINIFRIMLSRLQNGSGTH 426
+VKD +K+V++QFKAH SPISALCFD SG LLVTAS G NIN+FRIM + T
Sbjct: 361 IVKDITNKSVITQFKAHKSPISALCFDQSGLLLVTASIQGHNINVFRIMPT-----ISTS 420
Query: 427 SYDWSSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFALSPFGGETVLQM 486
+++ HL++L RG T+AVIQDICFS S I + SSRGT H+F ++P
Sbjct: 421 RAVKTTTFAHLFRLQRGFTNAVIQDICFSKDSNLIVVGSSRGTSHLFEINP--------- 480
Query: 487 HNSLVDGPNPLPASCVPWWSTSSFITNQQSLSPSPPPTVTLSVVSRIKNCN-SGWLNTVS 546
+G P+P +S +SRI++ N SGW+ TVS
Sbjct: 481 ---EKEGDAPVP----------------------------MSAISRIRSGNSSGWIGTVS 540
Query: 547 MSAVSASGKV--SIPSGAVSAVFHRC---TPQNLQSPQLSSNTLEHLLVFTPSGHVIQHK 606
+A +A+G V S+P G V++ F C + N + +LLVF PSG + Q+
Sbjct: 541 GAASAAAGMVAGSVP-GTVTSTFCYCDEKSNNNYYGSVADMCSKTNLLVFAPSGCMTQYA 600
Query: 607 LLPPMGGECGETILRSPNASMQMKDEELRVKVEPIQWWDVCRRAAWPEREECIS------ 666
L G ET + S + E ++ V+PI+ W + + + E + S
Sbjct: 601 LREHQVGVGHETAAMTGFDSESGLETEGKLAVDPIRRWSMIQNQSRRETHDPHSDIYGGG 660
Query: 667 -SITLRRKGTAEAVEDTSYKHE-HLEAQESEKPRDCSLLYLSNSEVQIN--SGRIPIWQK 726
S+ + K E V S + + + + + D LY+ +E Q ++P+W +
Sbjct: 661 TSVDSKSKVFPEVVRKQSVEEAWKVSKKGTTRVVDKRHLYIYEAEQQQTHLPTQLPLWAR 696
Query: 727 SKVHFYTMSFPGSNEPSSIKDHMNGEIEIEKILTNEVEIKRKDLLPVFDHFRGVQS 763
K F + N I E+EIE I T +E + +DL+PV+ + + +S
Sbjct: 721 RKFRFQELVL---NRGEEISGGGGREMEIEGIQTRTIEARTRDLVPVWGYLQSPRS 696
BLAST of CmaCh11G011140 vs. TAIR 10
Match:
AT3G56440.1 (homolog of yeast autophagy 18 (ATG18) D )
HSP 1 Score: 54.3 bits (129), Expect = 6.7e-07
Identity = 46/140 (32.86%), Postives = 62/140 (44.29%), Query Frame = 0
Query: 372 VVSQFKAHSSPISALCFDPSGTLLVTASTHGSNINIFRIMLSRLQNGSGTHSYDWSSSHV 431
+V AH S I+ + G LL TAST G+ I IF M GT
Sbjct: 197 MVQIINAHDSNIACMTLTLDGLLLATASTKGTLIRIFNTM-------DGT---------- 256
Query: 432 HLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFAL--SPFGGETVLQMHNSLVDG 491
L ++ RG+ A I I S QW+A+ S +GT HIF+L G + H + +
Sbjct: 257 RLQEVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVIGEDAYSTEHETSSNS 316
Query: 492 PNPL--PASCVPWWSTSSFI 508
PL PAS S+ SF+
Sbjct: 317 LQPLVSPASGANPGSSLSFL 319
BLAST of CmaCh11G011140 vs. TAIR 10
Match:
AT3G62770.1 (Transducin/WD40 repeat-like superfamily protein )
HSP 1 Score: 53.9 bits (128), Expect = 8.7e-07
Identity = 39/137 (28.47%), Postives = 60/137 (43.80%), Query Frame = 0
Query: 360 GMVVVKDFVSKAVVSQFKAHSSPISALCFDPSGTLLVTASTHGSNINIFRIMLSRLQNGS 419
G V ++ + SK AH S I+ G LL TAS+ G+ + IF + L+
Sbjct: 229 GQVRIEHYASKR-TKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTLRQ-- 288
Query: 420 GTHSYDWSSSHVHLYKLHRGMTSAVIQDICFSHYSQWIAIVSSRGTCHIFALSPFGGETV 479
++ RG A I + FS +QW+A+ S +GT H+F L G
Sbjct: 289 ---------------EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFGLKVNSGS-- 344
Query: 480 LQMHNSLVDGPNPLPAS 497
Q+ +S P+ P+S
Sbjct: 349 -QVKDSSRIAPDATPSS 344
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q8H1Q5 | 5.8e-274 | 55.61 | Autophagy-related protein 18h OS=Arabidopsis thaliana OX=3702 GN=ATG18H PE=2 SV=... | [more] |
Q8GUL1 | 2.2e-225 | 48.69 | Autophagy-related protein 18g OS=Arabidopsis thaliana OX=3702 GN=ATG18G PE=2 SV=... | [more] |
Q9FH32 | 1.9e-99 | 34.92 | Autophagy-related protein 18f OS=Arabidopsis thaliana OX=3702 GN=ATG18F PE=2 SV=... | [more] |
Q8CCN5 | 7.6e-40 | 28.79 | BCAS3 microtubule associated cell migration factor OS=Mus musculus OX=10090 GN=B... | [more] |
Q9H6U6 | 2.9e-39 | 28.32 | BCAS3 microtubule associated cell migration factor OS=Homo sapiens OX=9606 GN=BC... | [more] |