CmaCh11G011040 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G011040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	SWI/SNF complex subunit SWI3D-like
Location	Cma_Chr11: 6117295 .. 6126424 (-)
RNA-Seq Expression	CmaCh11G011040
Synteny	CmaCh11G011040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTCTCAAGTTAAATGCATCATGGGAGCATGAATTCTGGGTCATCCAATAACAGTATAATCAGCAACAATGGAGTTCTCAAAAGCAAACACTGCCATCATCATCTACCACTGAATCCAGGAACCTCCAAGCAAGTACTGAAATGGAGGAGAAGCGCCGAGACGCCGGAAATTTACCGGCGAACACCACGGATTCGCCTTCATCGGAGCCGCCTTCGTCTCGCCGTCGAGCTGGAGCTCAGAAGCGAAAGGTCAGCGCTCTCGGTGGCTCTAACTCCTCATCCGCTCCTTCGAAACGCGTTACTCGGGACAAATTTGCTCTTTTGCATCCTCCAAATCACAACGGTCCCTTCACTAGAGCTCGACTTGGCCCTAACAATGGCGCTGGAACAGCATCGGGTAATGCGGCTGAAGGTATCTCCGCCGCGGGATCAGTTAAGGTGGAGGGATCTTTTCTTCATTCCGAAGTTCAGCGTGGAGACACACTGGTCGCCGCGGCGGAGGAATTGAACAAGGCGAGTAGATTGGCGAATTTGGAAGCGTCTTTCGTAGCTGATTTCGAATCTATTAAATCTCGGGGTATGAATGCTCACGTCGTTCCGAATCATTGCGGTGAGTTTGGTTTACACACATGCAAAATCCTGGTTTGTGCCAATTATTTTAGAGGCTTATGGAGATGACTTTCCTGTTGAGAAAATGGAGTAATAGGAGAAAATTTTGAGGGGCTTGATGAAGGAGAGCTCCCCACTTTTCTTTGTTGTGATTAGGAATTCATATCTCAGTAATGCATATCTAACTCTACATTAGGCTTCGTGTATCTGTTTCAATCAAGTTCAGTGCACATTTTTTCACTTTAATTTTGTAAACATTTATTAGCAAATCGAGGGTAGTTTAAAGAAAGGTATATATAAGAACGTGGTGGAAGAAATAATAGTTACATCTTGAGCTCCTTCTGCCTTTCTGAAACTGTGATTGAATGCAAGAACATGAGAAAAATTTAAGCTCTCTGAAAGTTCTTATTATCCGAATCAATTGTGAAGAAGGATGGTTTGAACAACTGGAAATTAGGCCCCTTTCTTAACTTCTAGCTCATTTGTGTTGGCTTTGTTCCAGTTCTCATTTCGTAGAAAAAAACTCTGTCAAAAAGAGGAGAAAATTCAGGTTATTAAATTTTTTAATCTGTGATTTTATTTTGAAACTCAAAGGCGTATTGGGTTTAGGCCTCCAATGCATTTTTGCATGAACCTCTAGATGTAAGCTTTCAACCTTGTAAATTTATTGGTCGTGAATTAGTCATTTTTGCATCGGTGGTAGCGTAAAATTAGAGCTGCACTGCAGTACAACTCTTCTTTAATGGTCCATTAGTTTTCATTAATTTATTTGTGCGGAGGTCGAGAGGTCGAGAGTTTCAGATTGAGAATATAATTACCCTGTAGATAATCTTATGATATGTGAAATTATTTGAATGATGCCTGTTATCTTGGATTGGACAAGTACGTAGACAGATGTTTTTCATGGGCATCGAGAGGGAGTCTCAACCAGTATTTTTTGTTTCCCTTTTTTTGCCTTTCTATTTCTTGTTCATGGTTTGTTTCTTAAAGCTTCTTAATTATCTAAAATATGTATTGAGATTGATTTGACTCAGAATAACCAGCCATGCAATAAGCTTAATTCTTCTTCTTGACAAAAATTTCCTTTCTACCTTTCTAGCCCCTAGAACAAGCTTAATCCAAGGCTTTCTTTCATTAGTAAAGAGATATCCACTAGTTCATTGATTATTGATTTGGTCTTTGTTTTCAGGTTGGTTTTCATGGACAAAAGTCCACCCGATTGAGGAACGCTCGATGCCTTCTTTTTTCAGTGGAAACTCTGGCACTCGAAGCCCTGATATTTATATTGAGATACGTAATTGGATTATGAAAAAATTCCATGCAAATCCTAGTACGCAGATTGAGTCAAAAGATGTATCAGAGATGGAAATCGGAGAACTAGAGGCTAGACAGGAGGTGATGGAGTTTCTAGACCATTGGGGTTTGATTAATTTTCACCCTTTCCTATCTGCAGATTCAACTTCAACAAGTGATGTTGATGATGAAAATCAAAAGGACTCTTTGGTTGAGAAGTTGTTTCACTTTGAAACATTAGAATCCTCTCCATCTGTTGTTCCAAAGACTAATGTTACCACCGCTCCACCAAGATTGCTTCGAGAATCTGCAATTTCTGAAGAGATGGTGAGGCCTGAGGGTCCATCTGTTGAGTACCACTGTAACTCGTGCTCTGGTGATTGCTCTCGGAAACGGTACCACTGCCAGAAGCAGGTTGGTTTTCAATTCAAAACTCCTTCCTTAAACAGTTTATTGTTGGAATATCAAATTCGTATTTCAGGAATCGCATGGATGCATAATCATGACATCTAAATTTCATGAGTTGTCTCGCCAGTCAAATGTTATGTATCATTTACATATCAACTAATAGTATTCATCTTTGACAGGCAGATTTTGATTTATGTTCGGAGTGCTTTAACAATGGGAAATTTGATTCTGATATGTCTTCATCAGATTTTATTCTCATGGAGTCTGCTGAGGTTCCTGGTGCTAGTGGAGGTAAGTGGACAGATCAGGAAACTCTCCTCCTCCTTGAGGCTTTAGAGCTTTATAAGGAAAACTGGAATGAGATTGCAGAACATGTGGCCACCAAAACAAAAGCCCAATGTATATTGCACTTCATTCAAATGCCAATTGAAGATAGCTTTCTTGAATCTGAGAACAATGATGAAGTCGGTGCAAAAGAAACTGTTGTTCCACCATCAAATGAAAATGATTCGTCAGTTCCCATGGATATCACTGAATCGATGGATAACAAGACTACTAGAAAAGAGGCCTCAAATGTAGAAAATGCCAGCAAGGAAGATACAGTTGAGGTAAAAGTGGGGCAGGATAATTCAAAATCAAAGGATGTTGAAGTAAAAGCTGCTTTAGACAACTCGAAATCAGAAGATGGTGGTCAGAAGGTTTCTGAAGACATTGCCTTGAATGCTTTGAGGGAGGCATTTGAAGCCATTGGTTATGTATTAACATCTGATCAGCACCCACTTTCATTTTCTGGTGTAGGGAACCCTGTCATGGCACTGGTAAGTTGAAATTTAGAGTATAAGAACTAATGAAATAGGTAGTCTTCCTCATTTTATTTGATCGATCTTGATAATTTTTAATTCATTGGTATATCTCAAATCAATTATAGTAGATTTGTCATTTGTCGGATCAATATATGGTGTTTCCATTGTTTCTCTGAATCAGTTTAGGATTAAGTCTAATGATGTTGATGTTTTTTGCTTTTCATTAAAAAGCATCTAAAAATATAACCACTTTTTATAATTGTGCAGTGAACCAAAAACTTAAGTCATCACCTAAGTAGGTTCCTTGTGTCTGTTGAACTTGGTTTCTGGCATTTTCTTCAATTTTCCAAGTCCCAAAAATAGAAGATGATTGTTCACGTGATGAATCTTTTGGATGACATGGCAGGCATTTTAATTCTTGTTAGCCTATAAGATGCACCAGGTCTGCACTGCAAAGGAGCAGTTTGACGTTCACTTTGTATGAACTTACTACTTTGCTTGGAGGTGCACGTCAACTTTGTTGATTCTAGATTCTTGCTATCTTTTTCCTTTTCTTCTTTTATATTCAATTCAAATAATTTTCTATCCTAGCTAGAAAACGTTGGTTTAGCTTGAACCTGCTTTAGCCTTCTAGAAGTTTTCTGTGAGATATGTGTTTACATGAACCAAGTTTTGACAGTTATCTTTGTTGCAAGTTCTCATTCATTGACTTCTGTTGTTGCCCAGAATTACCTTCAGTTAGGTACTATCATGTTTATCATATTTATAGATGGAGCAGAAATGCTTAAGCCTATACTCTTTGTTCTTATCAGTAATTAGCACTCCCTATAATCATAAATTTTATTGCTGGTTGTTTAAATTATTAAATACTTCCTTTTCAGGCTGCATTCCTTGCACGCTTAGTTGGATCTGATGTTGCCGGTGCATCAGCTCATTTTTCTTTGAAAAGCATATCTCAGAAATCTCCCAGTTTAGATCTGGCTACAAGACACTGCTTTATTTTAGAAGATCCACTAGATGACAAGGCACAAGCTAATTCAGAGAGGTACTTGACGTTGAGACTTGACATGTTTGTTTCAGTTTAGTTCTATTCTTTGATCACAACTGATACTATTGCAGGGTTGTCAATGTGGAAGCTCAGCAAAATGTCAATGAACAGTGTGAAAAACAGAGGAAAGACAATTCTACTTCAGTCTTAGATGACAGAGCCTTATCAACGACTAACATTGATTACAAAAATGGAGAATCTGAGACAGAGGAAACAACAATGGAGAATAGAAATTCTTCAGATGCTACTAAAGAACACGATCCAATGGTTAATCATGGTTCAGATGGAACAAATAAATTGAAAGAACTGACAGAACCAGAAGCTCAGCAAAATGTCAATGAACAGTGTGAAAAACAGAGGAAAGACAATTCTACTTCAGTCTTAGATGACAGAGCCTTATCAACGACTAACATTGATTACAAAAATGGAGAATCTGTGACAGAGGAAACAACAATGGAGAATAGAAATTCTTCAGATGCTACTAAGGAACACGATCCAATGGTTAATCATGGTTCAGATGGAACAAATAAATTGAAAGAACTGACAGAACCAGAAGTGCCCAAGGATGATAGAACAGGCATTGTTAAGGAAACTGAAAATATGGAATCAAAATTGACAACAAATACATTTGAAAAATTGGGAGAAGAAACTTCTTTTGAAAAGCCATCACAATCTACGTTGTTATCAAAGGATATACATATCTCAGATCTACAGTATGCTGAAAAAACTGAGATTCAGAGACAAGATCCATCTCCTTCTGTCAATACTTCAAAAATAGATGATGTGCCAAATCCTTTACCTTCCGTGAATGAACTTCAGCCACTTTTTGCTGCCACTTCAGTGAAAGTAGCCTCAAGTGATGTAGCTATGGTATCTGATCCTCGAGATAAGAGTGAACCTGCACAAACTGAAACATCTAAATCTTTGGTTGACCAGGGAGCAAGCAAGGTCTCTGATTCTTTGCCCACAGAAGAGAATGCAACTCCACAGCCAGTTAAACAAAATCCAGTTCTTGATAAAGGAACAGGTGCGTGTTTCTTTTGTAGTTTTCCTCTAGTTTTAATTTTGTAGTCTATGGACCTCCCACCAGGCAGGTTACATTTTTGAGTTTTTTAAGAAACTGTTCAAGACTTTCCAAAGCTTGCACGTTCCAAGGGGATGGGGAAATACAAGTTATTTCCTATTGAACAATATTGACTTTGATTTGTTTTTAGGAACTTTATCATGCACTGTGATGTATGTTTCTGAGAAAAAGGATCATCAAGAACCGCAGAAGGAGTTTAGGACTTCTGTTAAGTTTGCTAGGAACTCTGAACTTGGGATGTCCAATGTCTTAACGCCAATTTATTTGGTCGAATCTTAGAGAAAATCTTGCTCATTAAAGGTAGGATAAATTTCTACCTGCCAATAGGAAGATTATTTCCTTCAAATTAGACAAGAGGCTTGGATGGAAGAGTAGGCAAGAGTTCAAAATGGGCTTTGACTATTAACTCTTACCCTTTTATACTACTCACAAGATGAATTGGCAAGAGTTCTCTGGTTTGCTTGGACATTCCTAAATGAAAAAACCTGAAGTGGTCTTGAACTCTGGAACTGAATAAACAAGTCTATGGGCAACACAGAAGAGAAAAGTTTGTTGAAAATAAAAATTATAAGTGAAGGTTCCGAGGTGTTGAGAGAAGAGGGGCTTGAATTGAAAGAATAGTTTGAGAGGTTGCATACCAGAGAAGAATTGCCCAGATAAAAGGTTAAACCTTAATGGTTCCACAAAAAATCCCCTGTACAAGGCAATCAGGAAAGGTTTTTACCCGAGGAAAATCGAAGTTTTTATTTTTATTTTTACGGGAGCTAAGACATGGAGGTATTAACCCAACTGCTTGACTTAAAAAAGGTTGCTATAAATATCTTGCAATATCACTTAATTGTGTTATGTGCATGAAGGCTACAGAATGGCACTGCCTTTTATTTGCCTATTGCACCTTTGCAAGAAATTTCTGGGAGTTTGTGCTTGCTGCTTTTGATTGGTTCATGGTGACGGGAAACATCCAAGATCTCTTAGCCATCTTTCTCTTGGAACACCCTTTTGGAATCATTAGAGAATAAGCTTCTTTGGTTATCTATCAAATAGTCTTCTTTTGGAATCATTGGGAAGAAAGGAATAGCTGAATTTTTATTCTCATTGTAGTTTTTCTACCTTAGTCGCTAATTGGAGGGTTTTTTTGCAACTACCTTAGTCGCTATAGTGGCTGGGTTAATCCTTTCTTCTGTACACTTCATTCATCAATAAAATCATATATTTCCTCCAAAGAAAACGGTTTAAACCCAGGAAATTAACTCTTATCTTTCCATAATAGTTCAGTGGAAGGAAGTGTGAAAAATGGATATAAATTGATCAGAAACGATGGAATTTGTGTTGAATCTCTCTTAGAAATTATACAGAAGTACTTAACCACTCTCATCAACTTTTCTCGTCTAGTTCTTCCATCTCCTTTGAATTGGAGGGATTAGATTGGCGCCATGTTCTTTTAACGTGCCACTTAATTCAGGCACATTAGTACAAACGCCAATCCTTATAAGTGCAGCATTAAGGTACTTATACATTGGAAAAAAGTGTTTAGTACTACTATTTCAAGAAATGTATCCACTTTTTTTCATGAGAGATAAATCCTTGTTCTAGTGGTAAAAACGGATGGCAGTATCTTTCTTCTTGGAGAAAGTGTAATTTTCTTGGGGGAATCATACTGTATTCGACAAAACCAATCATAGTGAAGATTCACTTTATTTCTTATCCTTCAAAGTACCCTATGCCAAAGTCCATGACCTCCAATTGGAGTAGCCATCCCAAGTTCCTTTACTCCACCCATCTTCATTAACTTAGATTGGAAGGTCTTCTTGTAACCTCCCTTGGTTGGAATGAGACACCTTCTCCCTTTGCTCATTTGGATTGGTTTTGCAGAAGAGGAAACAAGTTGGACTAGAAATCAAGAGTTTCATGGGAAGAAAGGGGGCTGTAACACTTTTTTTAATAGTATCTCAACTTTGTCTTTGCTTTAATAATATGATGGAGCAACTATTTAAGCAATTTTTTTTTTCCTTCTCCAAGTTTTTAGGGTTTTCGTGGATGAGTTAGAATGGCAGCCTATGCATAGTAGAGATAAGTTTCGGAGATTAAGCATGTAGCGTTTAGTTTTGTTTCGACTTGATTACCTTGTCTGAAGAGTGTTGGGAGAGTATTAAATTGGATGTGTTAAAGGTTAGGAGACATGTTTGAAAGAGTTGTAGAGAATGATTTGAAGGTGATGAGTCCTGCAACATATGCTTTAAGATCACAGAATTACGTTTGGTTCTTTGTGAACAAGATGGTATAATTTCTTGTGCTTTTCTCATCCTTTGTTTTTTCTAGTATAATATATTATGATGAAAACTGTGTTCGATCTGCTGTGCTCATCATTTGTGTGTGTATATATATATATATATCTAAGGACGGGAAAATCCCCGAAAAGAATTAGTTGTTACTATGACACGACCAAGAAGCTAGAAAATGAACGTGGTACAAAAAGTATTGGTGTTGGTGATATCTTCTAAGAGGTCGTTTGGTTTAAGACTTTATAGATGCTTGGAATGAACGGGTATCTGTCATTGATATGCTTGGAAATAAGATTGCTAGGTATAAAAGATTATTGTGTTTAGTTGTGCATGATAACGTTATTTGGAATTTATGAGTACAAATTATGTTTATATTTATTTTATGGAACTAATGGAGATAACCTTATATATAATTTAATAGATTAATTAATGAAACAATAAAAAAATTAATTCAAAATATCACTAAAAACTAATCTTTTTTAAATCCAAAATTGATTTATTAAAAATAATAAATCCTTTTAATTGGATAATTGAATATGATTTTAGCAGATAAGTTCATTAATTGATATATTTTTGTCGACAAAATTAATTGAATAAATATATGAATATTATTATTTTTAATTTTAATTGATTAATTATGATACATTCATAATGAATGTACTCATCAAAATTAGTCAAAGAAATAGTTAATTGATTATAAATGATCGATTAATTTGTTATAATTGAAAAATAATTAAGTAAATTAATTTTGGTCAACCAAAATCAATTAATTAATTAACTATATTCAAAATAAAATTGAATAACACGAGCAGATCATCAATCTTCTTTCATTTGCTAGGTTCGGCCAGAAGTTCTCTGAGGTTTCAAAATGTTTGTATAGTTCTTTTAGGTTTATATACTGACTGCCTGTGTTATTTATCGTGCCTGTTTATTTGTTCATAACAGATGATAATCAAAGCAAGAACAATGAAGAAGAAAATTCCAAATGTACAAGTAAGAAAGAGGAAAAAGTCGATAAGCTGAAGCGTGCTGCAGTTACGACGCTTGCAGCAGCAGCTGTGAAGGCAAAAGTTCTGGCTAATCAAGAAGAAGATCAAATTCGTCAACTTGCCATGATATTAATCGAGAAACAGGTATATCGATCAAAGTTGGTTTCGATCGATTTTTATTACATTTTAATGAAATTATTACCCCTTCTTTGGGCAGCTGCATAAGTTGGAAAGCAAGTTAGCATTCTTCAACGACATGGACAACGTGTCAATGAGAGTCAGGGAGCAACTGGACAGGTCAAAGCAAAGGCTTTTCCAGGAACGTGCGCAGATAATTGCTGCTCGACTTGGCTTACCTGCTTCGGCATCACGAGGTGTGGCACCGGTGTTGCCAGGAAACAGAATGGCTAGGAACTTCCCAAACTCAGTTCCAAAGCCTCCAATGGGCATGGCGCCCCAAAGGCCACCAACTTCTGGACCACGGGTATAGCTAGCTGCTACTAATCCTAACCCGAAATATGCAACCAACCAACACCAGTACCACAATTTCTGTAAGTTCATTTTTCACCTGCAAATCATCAGGACACACTTTCTTCTGTTGGTTCCAAGTAA

mRNA sequence

GAATTCTCAAGTTAAATGCATCATGGGAGCATGAATTCTGGGTCATCCAATAACAGTATAATCAGCAACAATGGAGTTCTCAAAAGCAAACACTGCCATCATCATCTACCACTGAATCCAGGAACCTCCAAGCAAGTACTGAAATGGAGGAGAAGCGCCGAGACGCCGGAAATTTACCGGCGAACACCACGGATTCGCCTTCATCGGAGCCGCCTTCGTCTCGCCGTCGAGCTGGAGCTCAGAAGCGAAAGGTCAGCGCTCTCGGTGGCTCTAACTCCTCATCCGCTCCTTCGAAACGCGTTACTCGGGACAAATTTGCTCTTTTGCATCCTCCAAATCACAACGGTCCCTTCACTAGAGCTCGACTTGGCCCTAACAATGGCGCTGGAACAGCATCGGGTAATGCGGCTGAAGGTATCTCCGCCGCGGGATCAGTTAAGGTGGAGGGATCTTTTCTTCATTCCGAAGTTCAGCGTGGAGACACACTGGTCGCCGCGGCGGAGGAATTGAACAAGGCGAGTAGATTGGCGAATTTGGAAGCGTCTTTCGTAGCTGATTTCGAATCTATTAAATCTCGGGGTATGAATGCTCACGTCGTTCCGAATCATTGCGGTTGGTTTTCATGGACAAAAGTCCACCCGATTGAGGAACGCTCGATGCCTTCTTTTTTCAGTGGAAACTCTGGCACTCGAAGCCCTGATATTTATATTGAGATACGTAATTGGATTATGAAAAAATTCCATGCAAATCCTAGTACGCAGATTGAGTCAAAAGATGTATCAGAGATGGAAATCGGAGAACTAGAGGCTAGACAGGAGGTGATGGAGTTTCTAGACCATTGGGGTTTGATTAATTTTCACCCTTTCCTATCTGCAGATTCAACTTCAACAAGTGATGTTGATGATGAAAATCAAAAGGACTCTTTGGTTGAGAAGTTGTTTCACTTTGAAACATTAGAATCCTCTCCATCTGTTGTTCCAAAGACTAATGTTACCACCGCTCCACCAAGATTGCTTCGAGAATCTGCAATTTCTGAAGAGATGGTGAGGCCTGAGGGTCCATCTGTTGAGTACCACTGTAACTCGTGCTCTGGTGATTGCTCTCGGAAACGGTACCACTGCCAGAAGCAGGCAGATTTTGATTTATGTTCGGAGTGCTTTAACAATGGGAAATTTGATTCTGATATGTCTTCATCAGATTTTATTCTCATGGAGTCTGCTGAGGTTCCTGGTGCTAGTGGAGGTAAGTGGACAGATCAGGAAACTCTCCTCCTCCTTGAGGCTTTAGAGCTTTATAAGGAAAACTGGAATGAGATTGCAGAACATGTGGCCACCAAAACAAAAGCCCAATGTATATTGCACTTCATTCAAATGCCAATTGAAGATAGCTTTCTTGAATCTGAGAACAATGATGAAGTCGGTGCAAAAGAAACTGTTGTTCCACCATCAAATGAAAATGATTCGTCAGTTCCCATGGATATCACTGAATCGATGGATAACAAGACTACTAGAAAAGAGGCCTCAAATGTAGAAAATGCCAGCAAGGAAGATACAGTTGAGGTAAAAGTGGGGCAGGATAATTCAAAATCAAAGGATGTTGAAGTAAAAGCTGCTTTAGACAACTCGAAATCAGAAGATGGTGGTCAGAAGGTTTCTGAAGACATTGCCTTGAATGCTTTGAGGGAGGCATTTGAAGCCATTGGTTATGTATTAACATCTGATCAGCACCCACTTTCATTTTCTGGTGTAGGGAACCCTGTCATGGCACTGGCTGCATTCCTTGCACGCTTAGTTGGATCTGATGTTGCCGGTGCATCAGCTCATTTTTCTTTGAAAAGCATATCTCAGAAATCTCCCAGTTTAGATCTGGCTACAAGACACTGCTTTATTTTAGAAGATCCACTAGATGACAAGGCACAAGCTAATTCAGAGAGGGTTGTCAATGTGGAAGCTCAGCAAAATGTCAATGAACAGTGTGAAAAACAGAGGAAAGACAATTCTACTTCAGTCTTAGATGACAGAGCCTTATCAACGACTAACATTGATTACAAAAATGGAGAATCTGAGACAGAGGAAACAACAATGGAGAATAGAAATTCTTCAGATGCTACTAAAGAACACGATCCAATGGTTAATCATGGTTCAGATGGAACAAATAAATTGAAAGAACTGACAGAACCAGAAGCTCAGCAAAATGTCAATGAACAGTGTGAAAAACAGAGGAAAGACAATTCTACTTCAGTCTTAGATGACAGAGCCTTATCAACGACTAACATTGATTACAAAAATGGAGAATCTGTGACAGAGGAAACAACAATGGAGAATAGAAATTCTTCAGATGCTACTAAGGAACACGATCCAATGGTTAATCATGGTTCAGATGGAACAAATAAATTGAAAGAACTGACAGAACCAGAAGTGCCCAAGGATGATAGAACAGGCATTGTTAAGGAAACTGAAAATATGGAATCAAAATTGACAACAAATACATTTGAAAAATTGGGAGAAGAAACTTCTTTTGAAAAGCCATCACAATCTACGTTGTTATCAAAGGATATACATATCTCAGATCTACAGTATGCTGAAAAAACTGAGATTCAGAGACAAGATCCATCTCCTTCTGTCAATACTTCAAAAATAGATGATGTGCCAAATCCTTTACCTTCCGTGAATGAACTTCAGCCACTTTTTGCTGCCACTTCAGTGAAAGTAGCCTCAAGTGATGTAGCTATGGTATCTGATCCTCGAGATAAGAGTGAACCTGCACAAACTGAAACATCTAAATCTTTGGTTGACCAGGGAGCAAGCAAGGTCTCTGATTCTTTGCCCACAGAAGAGAATGCAACTCCACAGCCAGTTAAACAAAATCCAGTTCTTGATAAAGGAACAGATGATAATCAAAGCAAGAACAATGAAGAAGAAAATTCCAAATGTACAAGTAAGAAAGAGGAAAAAGTCGATAAGCTGAAGCGTGCTGCAGTTACGACGCTTGCAGCAGCAGCTGTGAAGGCAAAAGTTCTGGCTAATCAAGAAGAAGATCAAATTCGTCAACTTGCCATGATATTAATCGAGAAACAGCTGCATAAGTTGGAAAGCAAGTTAGCATTCTTCAACGACATGGACAACGTGTCAATGAGAGTCAGGGAGCAACTGGACAGGTCAAAGCAAAGGCTTTTCCAGGAACGTGCGCAGATAATTGCTGCTCGACTTGGCTTACCTGCTTCGGCATCACGAGGTGTGGCACCGGTGTTGCCAGGAAACAGAATGGCTAGGAACTTCCCAAACTCAGTTCCAAAGCCTCCAATGGGCATGGCGCCCCAAAGGCCACCAACTTCTGGACCACGGGACACACTTTCTTCTGTTGGTTCCAAGTAA

Coding sequence (CDS)

ATGGAGGAGAAGCGCCGAGACGCCGGAAATTTACCGGCGAACACCACGGATTCGCCTTCATCGGAGCCGCCTTCGTCTCGCCGTCGAGCTGGAGCTCAGAAGCGAAAGGTCAGCGCTCTCGGTGGCTCTAACTCCTCATCCGCTCCTTCGAAACGCGTTACTCGGGACAAATTTGCTCTTTTGCATCCTCCAAATCACAACGGTCCCTTCACTAGAGCTCGACTTGGCCCTAACAATGGCGCTGGAACAGCATCGGGTAATGCGGCTGAAGGTATCTCCGCCGCGGGATCAGTTAAGGTGGAGGGATCTTTTCTTCATTCCGAAGTTCAGCGTGGAGACACACTGGTCGCCGCGGCGGAGGAATTGAACAAGGCGAGTAGATTGGCGAATTTGGAAGCGTCTTTCGTAGCTGATTTCGAATCTATTAAATCTCGGGGTATGAATGCTCACGTCGTTCCGAATCATTGCGGTTGGTTTTCATGGACAAAAGTCCACCCGATTGAGGAACGCTCGATGCCTTCTTTTTTCAGTGGAAACTCTGGCACTCGAAGCCCTGATATTTATATTGAGATACGTAATTGGATTATGAAAAAATTCCATGCAAATCCTAGTACGCAGATTGAGTCAAAAGATGTATCAGAGATGGAAATCGGAGAACTAGAGGCTAGACAGGAGGTGATGGAGTTTCTAGACCATTGGGGTTTGATTAATTTTCACCCTTTCCTATCTGCAGATTCAACTTCAACAAGTGATGTTGATGATGAAAATCAAAAGGACTCTTTGGTTGAGAAGTTGTTTCACTTTGAAACATTAGAATCCTCTCCATCTGTTGTTCCAAAGACTAATGTTACCACCGCTCCACCAAGATTGCTTCGAGAATCTGCAATTTCTGAAGAGATGGTGAGGCCTGAGGGTCCATCTGTTGAGTACCACTGTAACTCGTGCTCTGGTGATTGCTCTCGGAAACGGTACCACTGCCAGAAGCAGGCAGATTTTGATTTATGTTCGGAGTGCTTTAACAATGGGAAATTTGATTCTGATATGTCTTCATCAGATTTTATTCTCATGGAGTCTGCTGAGGTTCCTGGTGCTAGTGGAGGTAAGTGGACAGATCAGGAAACTCTCCTCCTCCTTGAGGCTTTAGAGCTTTATAAGGAAAACTGGAATGAGATTGCAGAACATGTGGCCACCAAAACAAAAGCCCAATGTATATTGCACTTCATTCAAATGCCAATTGAAGATAGCTTTCTTGAATCTGAGAACAATGATGAAGTCGGTGCAAAAGAAACTGTTGTTCCACCATCAAATGAAAATGATTCGTCAGTTCCCATGGATATCACTGAATCGATGGATAACAAGACTACTAGAAAAGAGGCCTCAAATGTAGAAAATGCCAGCAAGGAAGATACAGTTGAGGTAAAAGTGGGGCAGGATAATTCAAAATCAAAGGATGTTGAAGTAAAAGCTGCTTTAGACAACTCGAAATCAGAAGATGGTGGTCAGAAGGTTTCTGAAGACATTGCCTTGAATGCTTTGAGGGAGGCATTTGAAGCCATTGGTTATGTATTAACATCTGATCAGCACCCACTTTCATTTTCTGGTGTAGGGAACCCTGTCATGGCACTGGCTGCATTCCTTGCACGCTTAGTTGGATCTGATGTTGCCGGTGCATCAGCTCATTTTTCTTTGAAAAGCATATCTCAGAAATCTCCCAGTTTAGATCTGGCTACAAGACACTGCTTTATTTTAGAAGATCCACTAGATGACAAGGCACAAGCTAATTCAGAGAGGGTTGTCAATGTGGAAGCTCAGCAAAATGTCAATGAACAGTGTGAAAAACAGAGGAAAGACAATTCTACTTCAGTCTTAGATGACAGAGCCTTATCAACGACTAACATTGATTACAAAAATGGAGAATCTGAGACAGAGGAAACAACAATGGAGAATAGAAATTCTTCAGATGCTACTAAAGAACACGATCCAATGGTTAATCATGGTTCAGATGGAACAAATAAATTGAAAGAACTGACAGAACCAGAAGCTCAGCAAAATGTCAATGAACAGTGTGAAAAACAGAGGAAAGACAATTCTACTTCAGTCTTAGATGACAGAGCCTTATCAACGACTAACATTGATTACAAAAATGGAGAATCTGTGACAGAGGAAACAACAATGGAGAATAGAAATTCTTCAGATGCTACTAAGGAACACGATCCAATGGTTAATCATGGTTCAGATGGAACAAATAAATTGAAAGAACTGACAGAACCAGAAGTGCCCAAGGATGATAGAACAGGCATTGTTAAGGAAACTGAAAATATGGAATCAAAATTGACAACAAATACATTTGAAAAATTGGGAGAAGAAACTTCTTTTGAAAAGCCATCACAATCTACGTTGTTATCAAAGGATATACATATCTCAGATCTACAGTATGCTGAAAAAACTGAGATTCAGAGACAAGATCCATCTCCTTCTGTCAATACTTCAAAAATAGATGATGTGCCAAATCCTTTACCTTCCGTGAATGAACTTCAGCCACTTTTTGCTGCCACTTCAGTGAAAGTAGCCTCAAGTGATGTAGCTATGGTATCTGATCCTCGAGATAAGAGTGAACCTGCACAAACTGAAACATCTAAATCTTTGGTTGACCAGGGAGCAAGCAAGGTCTCTGATTCTTTGCCCACAGAAGAGAATGCAACTCCACAGCCAGTTAAACAAAATCCAGTTCTTGATAAAGGAACAGATGATAATCAAAGCAAGAACAATGAAGAAGAAAATTCCAAATGTACAAGTAAGAAAGAGGAAAAAGTCGATAAGCTGAAGCGTGCTGCAGTTACGACGCTTGCAGCAGCAGCTGTGAAGGCAAAAGTTCTGGCTAATCAAGAAGAAGATCAAATTCGTCAACTTGCCATGATATTAATCGAGAAACAGCTGCATAAGTTGGAAAGCAAGTTAGCATTCTTCAACGACATGGACAACGTGTCAATGAGAGTCAGGGAGCAACTGGACAGGTCAAAGCAAAGGCTTTTCCAGGAACGTGCGCAGATAATTGCTGCTCGACTTGGCTTACCTGCTTCGGCATCACGAGGTGTGGCACCGGTGTTGCCAGGAAACAGAATGGCTAGGAACTTCCCAAACTCAGTTCCAAAGCCTCCAATGGGCATGGCGCCCCAAAGGCCACCAACTTCTGGACCACGGGACACACTTTCTTCTGTTGGTTCCAAGTAA

Protein sequence

MEEKRRDAGNLPANTTDSPSSEPPSSRRRAGAQKRKVSALGGSNSSSAPSKRVTRDKFALLHPPNHNGPFTRARLGPNNGAGTASGNAAEGISAAGSVKVEGSFLHSEVQRGDTLVAAAEELNKASRLANLEASFVADFESIKSRGMNAHVVPNHCGWFSWTKVHPIEERSMPSFFSGNSGTRSPDIYIEIRNWIMKKFHANPSTQIESKDVSEMEIGELEARQEVMEFLDHWGLINFHPFLSADSTSTSDVDDENQKDSLVEKLFHFETLESSPSVVPKTNVTTAPPRLLRESAISEEMVRPEGPSVEYHCNSCSGDCSRKRYHCQKQADFDLCSECFNNGKFDSDMSSSDFILMESAEVPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDSFLESENNDEVGAKETVVPPSNENDSSVPMDITESMDNKTTRKEASNVENASKEDTVEVKVGQDNSKSKDVEVKAALDNSKSEDGGQKVSEDIALNALREAFEAIGYVLTSDQHPLSFSGVGNPVMALAAFLARLVGSDVAGASAHFSLKSISQKSPSLDLATRHCFILEDPLDDKAQANSERVVNVEAQQNVNEQCEKQRKDNSTSVLDDRALSTTNIDYKNGESETEETTMENRNSSDATKEHDPMVNHGSDGTNKLKELTEPEAQQNVNEQCEKQRKDNSTSVLDDRALSTTNIDYKNGESVTEETTMENRNSSDATKEHDPMVNHGSDGTNKLKELTEPEVPKDDRTGIVKETENMESKLTTNTFEKLGEETSFEKPSQSTLLSKDIHISDLQYAEKTEIQRQDPSPSVNTSKIDDVPNPLPSVNELQPLFAATSVKVASSDVAMVSDPRDKSEPAQTETSKSLVDQGASKVSDSLPTEENATPQPVKQNPVLDKGTDDNQSKNNEEENSKCTSKKEEKVDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLHKLESKLAFFNDMDNVSMRVREQLDRSKQRLFQERAQIIAARLGLPASASRGVAPVLPGNRMARNFPNSVPKPPMGMAPQRPPTSGPRDTLSSVGSK

Homology

[Close]

BLAST of CmaCh11G011040 vs. ExPASy Swiss-Prot
Match: Q8VY05 (SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana OX=3702 GN=SWI3D PE=1 SV=3)

HSP 1 Score: 655.6 bits (1690), Expect = 9.7e-187
Identity = 474/1096 (43.25%), Postives = 619/1096 (56.48%), Query Frame = 0


Query: 1    MEEKRRD-AGNL--PANTTDSPSSEP-PSSRRRAGAQKRKVSALGGSN-SSSAPSKR-VT 60
            MEEKRRD AG L    ++ DSP+SEP P+ RRR G  KRK +ALGGSN  SSAPSKR +T
Sbjct: 1    MEEKRRDSAGTLAFAGSSGDSPASEPMPAPRRRGGGLKRKANALGGSNFFSSAPSKRMLT 60

Query: 61   RDKFALL-HPPNHNGPFTRARLGPNNGAGTASGNAAEGISAAGSVKVEGSFLHSEVQRGD 120
            R+K  L    P HNGP TRAR  P+     A G  +E ++ A  V  +G     E     
Sbjct: 61   REKAMLASFSPVHNGPLTRARQAPSIMPSAADGVKSEVLNVA--VGADGEKPKEE----- 120

Query: 121  TLVAAAEELNKASR-LANLEASFVADFESIKSRGMNAHVVPNHCGWFSWTKVHPIEERSM 180
                  EE NKA R    LEA   ADFE+I+SR  N HVVPNHCGWFSW K+HP+EERS+
Sbjct: 121  ------EERNKAIREWEALEAKIEADFEAIRSRDSNVHVVPNHCGWFSWEKIHPLEERSL 180

Query: 181  PSFFSGNSGTRSPDIYIEIRNWIMKKFHANPSTQIESKDVSEMEIGELEARQEVMEFLDH 240
            PSFF+G    R+ ++Y EIRNWIM KFH+NP+ QIE KD++E+E+G+ EA+QEVMEFLD+
Sbjct: 181  PSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIELKDLTELEVGDSEAKQEVMEFLDY 240

Query: 241  WGLINFHPFLSADSTST-SDVDDENQKDSLVEKLFHFETLESSPSVV--PKTNVTTAPPR 300
            WGLINFHPF   D+ ST SD DD   K+SL+  L+ F+  E+ P +V  P+      P  
Sbjct: 241  WGLINFHPFPPTDTGSTASDHDDLGDKESLLNSLYRFQVDEACPPLVHKPRFTAQATPSG 300

Query: 301  LLRESAISEEMVRPEGPSVEYHCNSCSGDCSRKRYHCQKQADFDLCSECFNNGKFDSDMS 360
            L  +   ++E+++ EGP+VEYHCNSCS DCSRKRYHC KQADFDLC+ECFN+GKF SDMS
Sbjct: 301  LFPDPMAADELLKQEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMS 360

Query: 361  SSDFILMESAEVPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQ 420
            SSDFILME AE PG   GKWTDQETLLLLEALE++KENWNEIAEHVATKTKAQC+LHF+Q
Sbjct: 361  SSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQ 420

Query: 421  MPIEDSFLESENNDEVGAKETVVPPSNENDSSVPMDITESMDNKTTRKEASNVENASK-E 480
            MPIED+FL+  +  +  +K+T     +++D+SV  D  E  +NK    E   ++   + E
Sbjct: 421  MPIEDAFLDQIDYKDPISKDTTDLAVSKDDNSVLKDAPEEAENKKRVDEDETMKEVPEPE 480

Query: 481  DTVEVKVGQDNSKSKDV-----EVKA-----ALDNSKSEDGGQKVSEDIALNALREAFEA 540
            D  E KV Q++SK  D      E++A      L+ +  E    +  E+IAL AL EAFE 
Sbjct: 481  DGNEEKVSQESSKPGDASEETNEMEAEQKTPKLETAIEERCKDEADENIALKALTEAFED 540

Query: 541  IGYVLTSDQHPLSFSGVGNPVMALAAFLARLVGSDVAGASAHFSLKSISQKSPSLDLATR 600
            +G+  T +    SF+ +GNPVM LAAFL RL GSDVA ASA  S+KS+   S  L LATR
Sbjct: 541  VGHSSTPEA-SFSFADLGNPVMGLAAFLVRLAGSDVATASARASIKSLHSNSGML-LATR 600

Query: 601  HCFILEDPLDDKAQANSERVVNVEAQQNVNEQCEKQRKDNSTSVLDDRALSTTNIDYKNG 660
            HC+ILEDP D+K      +  + +A+ N          DNS                   
Sbjct: 601  HCYILEDPPDNKKDPTKSKSCSADAEGN---------DDNS------------------- 660

Query: 661  ESETEETTMENRNSSDATKEHDPMVNHGSDGTNKLKELTEPEAQQNVNEQCEKQRKDNST 720
                                      H  D         +PE         EK +K    
Sbjct: 661  --------------------------HKDD---------QPE---------EKSKKAEEV 720

Query: 721  SV-LDDRALSTTNIDYKNGESVTEETTMENRNSSDATKEHDPMVNHGSDGTNKLKELTEP 780
            S+  DDR +  T+   +  +SV+EE    +R                 + T KL  + E 
Sbjct: 721  SLNSDDREMPDTDTGKETQDSVSEEKQPGSRT---------------ENSTTKLDAVQEK 780

Query: 781  EVPKDDRTGIVKETENMESKLTTNTFEKLGEETSFEKPSQSTLLSKDIHISDLQYAEKTE 840
               K                +TT+  EK         PSQ     K++    L+   K  
Sbjct: 781  RSSK---------------PVTTDNSEK---PVDIICPSQDKCSGKELQ-EPLKDGNKLS 840

Query: 841  IQRQDPSPSVNTSKIDDVPNPLPSVNELQPLFAATSVKVASSDVAMVSDPRDKSEPAQT- 900
             + +D S S  +    D   P                  AS DV M    + + +P    
Sbjct: 841  SENKDASQSTVSQSAADASQP-----------------EASRDVEMKDTLQSEKDPEDVV 900

Query: 901  ----ETSKSLVDQGASKVSDSLPTEENATPQPVKQNPVLDKGT-DDNQSKNNEEENSKCT 960
                E  +   ++GA+ V  +   +++ + QP+      + GT   N +   ++E   C 
Sbjct: 901  KTVGEKVQLAKEEGANDVLST--PDKSVSQQPIGSASAPENGTAGGNPNIEGKKEKDICE 954

Query: 961  SKKEE-KVDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLHKLESKLAFFN 1020
              K++  ++KLKRAA++ ++AAAVKAK LA QEEDQIRQL+  LIEKQLHKLE+KL+ FN
Sbjct: 961  GTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIEKQLHKLEAKLSIFN 954

Query: 1021 DMDNVSMRVREQLDRSKQRLFQERAQIIAARLGLPASASRGVAPVLPGNRMARNFPNSVP 1067
            + ++++MRVREQL+RS+QRL+ ERAQIIAARLG+P S S   +  LP NR+A NF N   
Sbjct: 1021 EAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSSKAS--LPTNRIAANFANVAQ 954

[Close]

BLAST of CmaCh11G011040 vs. ExPASy Swiss-Prot
Match: Q9XI07 (SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana OX=3702 GN=SWI3C PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.6e-41
Identity = 150/502 (29.88%), Postives = 221/502 (44.02%), Query Frame = 0


Query: 88  AAEGISAAGSVKVEGS------FLHSEVQRGDTLVAAAEELNKASRLAN---LEASFVAD 147
           AAE     G  + +GS          ++Q   T+ A + +L ++   ++   +    + D
Sbjct: 104 AAERAGLIGETRGQGSLPALENISFGQLQALSTVPADSLDLERSDGSSSAYVISPPPIMD 163

Query: 148 FESIKSR-GMNAHVVPNHCGWFSWTKVHPIEERSMPSFFSGNSGTRSPDIYIEIRNWIMK 207
            E +  R G   HV+P H  WF+   V  +E + +P FFSG S   +P+ Y+E RN I+ 
Sbjct: 164 GEGVVKRFGDLVHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVS 223

Query: 208 KFHANPSTQIESKDVSEMEIG-ELEARQEVMEFLDHWGLINFHPFLSADSTSTSDVDDEN 267
           K+  NP   +   D   +  G ++E    V  FLDHWG+IN+     +      DV D  
Sbjct: 224 KYVENPEKTLTISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQSHPGPLRDVSDV- 283

Query: 268 QKDSLVEKLFHFETLESSPSVV--PKTN-------VTTAPPRLLRESAISEEMVRPEGPS 327
           ++D+  E       L S  S++   K N       V ++ P L  +S   +  +R     
Sbjct: 284 REDTNGEVNVPSAALTSIDSLIKFDKPNCRHKGGEVYSSLPSLDGDSPDLDIRIREH--L 343

Query: 328 VEYHCNSCSGDCSRKRYHCQKQADFDLCSECFNNGKFDSDMSSSDFILMESAEVPG-ASG 387
            + HCN CS       +  QK+ D  LC +CF++G+F    S  DF+ ++  +  G   G
Sbjct: 344 CDSHCNHCSRPLPTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKFYGDQDG 403

Query: 388 GKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDSFLESENNDEVG 447
             WTDQETLLLLEA+ELY ENW +IA+HV +K+KAQCILHF+++P+ED  L+   N EV 
Sbjct: 404 DNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLLD---NVEVS 463

Query: 448 AKETVVPPSNENDSSVPMDITESMDNKTTRKEASNVENASKEDTVEVKVGQDNSKSKDVE 507
                  P+N              D+K T                   +   + +  D E
Sbjct: 464 GVTNTENPTN------------GYDHKGTDSNGD--------------LPGYSEQGSDTE 523

Query: 508 VKAALDNSKSEDGGQKVSEDIALNALREAFEAIGYVLTSDQHPLSFSGVGNPVMALAAFL 567
           +K                                         L F    NPVMAL AFL
Sbjct: 524 IK-----------------------------------------LPFVKSPNPVMALVAFL 532

Query: 568 ARLVGSDVAGASAHFSLKSISQ 569
           A  VG  VA + AH SL  +S+
Sbjct: 584 ASAVGPRVAASCAHESLSVLSE 532

HSP 2 Score: 51.6 bits (122), Expect = 6.4e-05
Identity = 37/124 (29.84%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 906  KQNPVLDKGTDDNQSKNNEEENSKCTSKKEEKVDKLKRAAVTTLAAAAVKAKVLANQEED 965
            K+  +LD         +     +   ++     DK+  A    L+AAA KAK+ A+ EE 
Sbjct: 544  KEASLLDGENQQQDGAHKTSSQNGAEAQTPLPQDKVMAAFRAGLSAAATKAKLFADHEER 603

Query: 966  QIRQLAMILIEKQLHKLESKLAFFNDMDNVSMRVREQLDRSKQRLFQERAQIIAARLGLP 1025
            +I++L+  ++  QL ++E KL  F +++ + M+  EQ+++++QR   ERA++++AR G P
Sbjct: 604  EIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGSP 663

Query: 1026 ASAS 1030
               S
Sbjct: 664  GGIS 667

[Close]

BLAST of CmaCh11G011040 vs. ExPASy Swiss-Prot
Match: O14470 (SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr2 PE=1 SV=3)

HSP 1 Score: 166.0 bits (419), Expect = 2.3e-39
Identity = 109/368 (29.62%), Postives = 180/368 (48.91%), Query Frame = 0


Query: 151 VVPNHCGWFSWTKVHPIEERSMPSFFSGNSGTRSPDIYIEIRNWIMKKFHANPSTQIESK 210
           +VP++ GWF  +K+H IE RS P FF+G S  ++P IY + R++++  +   P+  +   
Sbjct: 19  IVPSYAGWFDMSKIHDIERRSNPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYLTVT 78

Query: 211 DVSEMEIGELEARQEVMEFLDHWGLINFHPFLSADSTSTSDVDDENQKDSLVEKLF-HFE 270
                 +G++ A   V  FL+ WGLIN+             +D E +    +  +  H +
Sbjct: 79  ACRRNLVGDVCAIIRVHAFLEQWGLINY------------QIDPETRPAFRLPPISGHVQ 138

Query: 271 TLESSPSVVPKTNVTTAPPRLLRESAISEEMVRPEG------------------------ 330
            + ++P V  +      PP  +  S+ S+E V+ E                         
Sbjct: 139 AISNTPIVTQEMLAQHPPPSTVGGSS-SQEFVKLEEKHYSPSLNAMEQTSPKEEDEKSDK 198

Query: 331 -PSVEYHCNSCSGDCSRKRYHCQKQADFDLCSECFNNGKFDSDMSSSDFILMESAEVPGA 390
            P V+  C +C  +CS+  YH  K   +D+C  C+  G+F S  +SSDF+ M++ +    
Sbjct: 199 VPRVDKVCFTCGVNCSQTWYHNLKNKKYDICPNCYKQGRFSSSFNSSDFLCMDAIDFNHD 258

Query: 391 SGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDSFLESENNDE 450
               W++QETLLLLEA+E Y ++WN+IA HV ++TK QC++HF+Q+PIED + +    D 
Sbjct: 259 EEKPWSNQETLLLLEAIETYGDDWNQIALHVGSRTKEQCLIHFLQIPIEDPYRQKLQGDF 318

Query: 451 VGAKETVVPPSNENDSSVPMDITESMDNKTTRKEASNVENASKEDTVEVKVGQDNSKSKD 493
              K+  + P +EN++ V   +T           AS V+   KE      V Q  +   +
Sbjct: 319 SPFKKGFL-PFDENENPVLSTLTYL---------ASIVQQGMKERKQNESVKQGETSFGN 363

[Close]

BLAST of CmaCh11G011040 vs. ExPASy Swiss-Prot
Match: Q53KK6 (SWI/SNF complex subunit SWI3C homolog OS=Oryza sativa subsp. japonica OX=39947 GN=SWI3C PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.8e-36
Identity = 95/287 (33.10%), Postives = 153/287 (53.31%), Query Frame = 0


Query: 150 HVVPNHCGWFSWTKVHPIEERSMPSFFSGNSGTRSPDIYIEIRNWIMKKFHANPSTQIES 209
           HVVP H  WFS   VH +E + +P FFSG S   +P+ Y+ +RN ++ K+  NPS ++  
Sbjct: 185 HVVPKHSDWFSPGIVHRLERQVVPQFFSGKSPGNTPEKYMLLRNKVIAKYLENPSKRLAF 244

Query: 210 KDVSEM--EIGELEARQEVMEFLDHWGLINFHPFLSADST------STSDVDDENQKD-- 269
            +   +     EL     ++ FLD WG+IN   +L++ S       +TS + +E   +  
Sbjct: 245 AECQGLVANTAELYDLSRIVRFLDTWGIIN---YLASGSVHRGLRMATSLLREEPTGELQ 304

Query: 270 ------SLVEKLFHFETLESSPSVVPKTNVTTAPPRLLRESAISEEMVRPEGPSVEYHCN 329
                   ++ L  F+  + +      +++ +    +  ++ ++E   +      E  C+
Sbjct: 305 LLTAPLKSIDGLILFDRPKCNLQAEDISSLASNSEVVDFDAGLAELDGKIRERLSESSCS 364

Query: 330 SCSGDCSRKRYHCQKQADFDLCSECFNNGKFDSDMSSSDFILMESAEVPGAS-GGKWTDQ 389
            C    +   Y   K+AD  LCS+CF++ ++ +  SS DF  ++       + G  WTDQ
Sbjct: 365 YCLQPLTSLHYQSLKEADIALCSDCFHDARYITGHSSLDFQRIDGDNDRSENDGDSWTDQ 424

Query: 390 ETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDSFLES 420
           ETLLLLE +E Y +NWN IAEHV TK+KAQCI HFI++P+ED  LE+
Sbjct: 425 ETLLLLEGIEKYNDNWNNIAEHVGTKSKAQCIYHFIRLPVEDGLLEN 468

HSP 2 Score: 65.9 bits (159), Expect = 3.3e-09
Identity = 48/131 (36.64%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 939  DKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLHKLESKLAFFNDMDNVSMR 998
            +K+K AA+  L+AAA KAK+ A+QEE +I++L   +I  QL +LE KL  F +++ + ++
Sbjct: 584  EKVKHAAMCGLSAAATKAKLFADQEEREIQRLTATVINHQLKRLELKLKQFAEVETLLLK 643

Query: 999  VREQLDRSKQRLFQERAQIIAARLGLPASASRGVAPVLPG---NRMARNFPNSVPKPPMG 1058
              EQ++R +QR+  +R +I++ RL  P ++       LPG   + M+ N P S+   PMG
Sbjct: 644  ECEQVERIRQRIASDRVRIVSTRLASPGNS-------LPGGSTSTMSSN-PMSMSPRPMG 703

Query: 1059 MAPQRPPTSGP 1067
            +    P +S P
Sbjct: 704  VPGSMPQSSMP 706

[Close]

BLAST of CmaCh11G011040 vs. ExPASy Swiss-Prot
Match: Q6PDG5 (SWI/SNF complex subunit SMARCC2 OS=Mus musculus OX=10090 GN=Smarcc2 PE=1 SV=2)

HSP 1 Score: 141.4 bits (355), Expect = 6.2e-32
Identity = 84/270 (31.11%), Postives = 141/270 (52.22%), Query Frame = 0


Query: 151 VVPNHCGWFSWTKVHPIEERSMPSFFSGNSGTRSPDIYIEIRNWIMKKFHANPSTQIESK 210
           ++P++  WF +  VH IE R++P FF+G + +++P+IY+  RN+++  +  NP   + S 
Sbjct: 425 IIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTST 484

Query: 211 DVSEMEIGELEARQEVMEFLDHWGLINFHPFLSADSTSTSDVDDENQKDSL-VEKLFHFE 270
                  G++ A   V  FL+ WGLIN+             VD E++   +      HF 
Sbjct: 485 ACRRNLAGDVCAIMRVHAFLEQWGLINY------------QVDAESRPTPMGPPPTSHFH 544

Query: 271 TLESSPSVVPKTNVTTAPPRLLRESAISEEMVR-PEGPSVEYHCNSCSGDCSRKRYHCQK 330
            L  +PS      +    P+  ++S+ S++M+  PE                      +K
Sbjct: 545 VLADTPS-----GLVPLQPKPPQQSSASQQMLNFPEKGK-------------------EK 604

Query: 331 QADFDLCSECFNNGKFDSDMSSSDFILMESAEVPGASGGKWTDQETLLLLEALELYKENW 390
            AD         N    +DM +   +  +S     A+  +WT+QETLLLLEALE+YK++W
Sbjct: 605 PAD-------MQNFGLRTDMYTKKNVPSKSKAAASAT-REWTEQETLLLLEALEMYKDDW 650

Query: 391 NEIAEHVATKTKAQCILHFIQMPIEDSFLE 419
           N+++EHV ++T+ +CILHF+++PIED +LE
Sbjct: 665 NKVSEHVGSRTQDECILHFLRLPIEDPYLE 650

HSP 2 Score: 45.8 bits (107), Expect = 3.5e-03
Identity = 83/298 (27.85%), Postives = 123/298 (41.28%), Query Frame = 0


Query: 788  EETSFEKPSQSTLLSKDIHISDLQYAEKTEIQRQDPSPSVNTSKIDDVPNPLPSVNELQP 847
            EE S  K    T L  + H+  ++ A K    + DP+  + +S I    +  P   E   
Sbjct: 698  EEFSKMKEEVPTAL-VEAHVRKVEEAAKV-TGKADPAFGLESSGIAGTASDEPERIEESG 757

Query: 848  LFAATSVKVASSDVAMVSDPRDKSEPAQTETSKSL-----VDQGASKVSDSLPTEENATP 907
               A     A+ +     +PR+     + E  + +      D+   K  DS    E +  
Sbjct: 758  TEEARPEGQAADEKKEPKEPREGGGAVEEEAKEEISEVPKKDEEKGKEGDSEKESEKSDG 817

Query: 908  QPVKQNPVLDKGTDDNQS---KNNEEENSKCTSKKEEKVDK--LKRAAVTTLAAAAVKAK 967
             P+  +P  DK   + Q    K   E   +  +K E  + +  L  AA   LAAAAVKAK
Sbjct: 818  DPI-VDPEKDKEPTEGQEEVLKEVAEPEGERKTKVERDIGEGNLSTAAAAALAAAAVKAK 877

Query: 968  VLANQEEDQIRQLAMILIEKQLHKLESKLAFFNDMDNVSMRVREQLDRSKQRLFQERAQI 1027
             LA  EE +I+ L  +L+E Q+ KLE KL  F +++ +  R RE L+  +Q+L  +R   
Sbjct: 878  HLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLADRQAF 937

Query: 1028 IAARLGLPASASR------------GVAPVLPGNRMARNFPNSVPKPPMGMAPQRPPT 1064
               +L      +R               P LP        P S P PP G A   PPT
Sbjct: 938  HMEQLKYAEMRARQQHFQQMHQQQQQQPPTLP--------PGSQPIPPTGAA--GPPT 982

[Close]

BLAST of CmaCh11G011040 vs. TAIR 10
Match: AT4G34430.1 (DNA-binding family protein )

HSP 1 Score: 655.6 bits (1690), Expect = 6.9e-188
Identity = 474/1096 (43.25%), Postives = 619/1096 (56.48%), Query Frame = 0


Query: 1    MEEKRRD-AGNL--PANTTDSPSSEP-PSSRRRAGAQKRKVSALGGSN-SSSAPSKR-VT 60
            MEEKRRD AG L    ++ DSP+SEP P+ RRR G  KRK +ALGGSN  SSAPSKR +T
Sbjct: 1    MEEKRRDSAGTLAFAGSSGDSPASEPMPAPRRRGGGLKRKANALGGSNFFSSAPSKRMLT 60

Query: 61   RDKFALL-HPPNHNGPFTRARLGPNNGAGTASGNAAEGISAAGSVKVEGSFLHSEVQRGD 120
            R+K  L    P HNGP TRAR  P+     A G  +E ++ A  V  +G     E     
Sbjct: 61   REKAMLASFSPVHNGPLTRARQAPSIMPSAADGVKSEVLNVA--VGADGEKPKEE----- 120

Query: 121  TLVAAAEELNKASR-LANLEASFVADFESIKSRGMNAHVVPNHCGWFSWTKVHPIEERSM 180
                  EE NKA R    LEA   ADFE+I+SR  N HVVPNHCGWFSW K+HP+EERS+
Sbjct: 121  ------EERNKAIREWEALEAKIEADFEAIRSRDSNVHVVPNHCGWFSWEKIHPLEERSL 180

Query: 181  PSFFSGNSGTRSPDIYIEIRNWIMKKFHANPSTQIESKDVSEMEIGELEARQEVMEFLDH 240
            PSFF+G    R+ ++Y EIRNWIM KFH+NP+ QIE KD++E+E+G+ EA+QEVMEFLD+
Sbjct: 181  PSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIELKDLTELEVGDSEAKQEVMEFLDY 240

Query: 241  WGLINFHPFLSADSTST-SDVDDENQKDSLVEKLFHFETLESSPSVV--PKTNVTTAPPR 300
            WGLINFHPF   D+ ST SD DD   K+SL+  L+ F+  E+ P +V  P+      P  
Sbjct: 241  WGLINFHPFPPTDTGSTASDHDDLGDKESLLNSLYRFQVDEACPPLVHKPRFTAQATPSG 300

Query: 301  LLRESAISEEMVRPEGPSVEYHCNSCSGDCSRKRYHCQKQADFDLCSECFNNGKFDSDMS 360
            L  +   ++E+++ EGP+VEYHCNSCS DCSRKRYHC KQADFDLC+ECFN+GKF SDMS
Sbjct: 301  LFPDPMAADELLKQEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMS 360

Query: 361  SSDFILMESAEVPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQ 420
            SSDFILME AE PG   GKWTDQETLLLLEALE++KENWNEIAEHVATKTKAQC+LHF+Q
Sbjct: 361  SSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQ 420

Query: 421  MPIEDSFLESENNDEVGAKETVVPPSNENDSSVPMDITESMDNKTTRKEASNVENASK-E 480
            MPIED+FL+  +  +  +K+T     +++D+SV  D  E  +NK    E   ++   + E
Sbjct: 421  MPIEDAFLDQIDYKDPISKDTTDLAVSKDDNSVLKDAPEEAENKKRVDEDETMKEVPEPE 480

Query: 481  DTVEVKVGQDNSKSKDV-----EVKA-----ALDNSKSEDGGQKVSEDIALNALREAFEA 540
            D  E KV Q++SK  D      E++A      L+ +  E    +  E+IAL AL EAFE 
Sbjct: 481  DGNEEKVSQESSKPGDASEETNEMEAEQKTPKLETAIEERCKDEADENIALKALTEAFED 540

Query: 541  IGYVLTSDQHPLSFSGVGNPVMALAAFLARLVGSDVAGASAHFSLKSISQKSPSLDLATR 600
            +G+  T +    SF+ +GNPVM LAAFL RL GSDVA ASA  S+KS+   S  L LATR
Sbjct: 541  VGHSSTPEA-SFSFADLGNPVMGLAAFLVRLAGSDVATASARASIKSLHSNSGML-LATR 600

Query: 601  HCFILEDPLDDKAQANSERVVNVEAQQNVNEQCEKQRKDNSTSVLDDRALSTTNIDYKNG 660
            HC+ILEDP D+K      +  + +A+ N          DNS                   
Sbjct: 601  HCYILEDPPDNKKDPTKSKSCSADAEGN---------DDNS------------------- 660

Query: 661  ESETEETTMENRNSSDATKEHDPMVNHGSDGTNKLKELTEPEAQQNVNEQCEKQRKDNST 720
                                      H  D         +PE         EK +K    
Sbjct: 661  --------------------------HKDD---------QPE---------EKSKKAEEV 720

Query: 721  SV-LDDRALSTTNIDYKNGESVTEETTMENRNSSDATKEHDPMVNHGSDGTNKLKELTEP 780
            S+  DDR +  T+   +  +SV+EE    +R                 + T KL  + E 
Sbjct: 721  SLNSDDREMPDTDTGKETQDSVSEEKQPGSRT---------------ENSTTKLDAVQEK 780

Query: 781  EVPKDDRTGIVKETENMESKLTTNTFEKLGEETSFEKPSQSTLLSKDIHISDLQYAEKTE 840
               K                +TT+  EK         PSQ     K++    L+   K  
Sbjct: 781  RSSK---------------PVTTDNSEK---PVDIICPSQDKCSGKELQ-EPLKDGNKLS 840

Query: 841  IQRQDPSPSVNTSKIDDVPNPLPSVNELQPLFAATSVKVASSDVAMVSDPRDKSEPAQT- 900
             + +D S S  +    D   P                  AS DV M    + + +P    
Sbjct: 841  SENKDASQSTVSQSAADASQP-----------------EASRDVEMKDTLQSEKDPEDVV 900

Query: 901  ----ETSKSLVDQGASKVSDSLPTEENATPQPVKQNPVLDKGT-DDNQSKNNEEENSKCT 960
                E  +   ++GA+ V  +   +++ + QP+      + GT   N +   ++E   C 
Sbjct: 901  KTVGEKVQLAKEEGANDVLST--PDKSVSQQPIGSASAPENGTAGGNPNIEGKKEKDICE 954

Query: 961  SKKEE-KVDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLHKLESKLAFFN 1020
              K++  ++KLKRAA++ ++AAAVKAK LA QEEDQIRQL+  LIEKQLHKLE+KL+ FN
Sbjct: 961  GTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIEKQLHKLEAKLSIFN 954

Query: 1021 DMDNVSMRVREQLDRSKQRLFQERAQIIAARLGLPASASRGVAPVLPGNRMARNFPNSVP 1067
            + ++++MRVREQL+RS+QRL+ ERAQIIAARLG+P S S   +  LP NR+A NF N   
Sbjct: 1021 EAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSSKAS--LPTNRIAANFANVAQ 954

[Close]

BLAST of CmaCh11G011040 vs. TAIR 10
Match: AT4G34430.2 (DNA-binding family protein )

HSP 1 Score: 655.6 bits (1690), Expect = 6.9e-188
Identity = 474/1096 (43.25%), Postives = 619/1096 (56.48%), Query Frame = 0


Query: 1    MEEKRRD-AGNL--PANTTDSPSSEP-PSSRRRAGAQKRKVSALGGSN-SSSAPSKR-VT 60
            MEEKRRD AG L    ++ DSP+SEP P+ RRR G  KRK +ALGGSN  SSAPSKR +T
Sbjct: 1    MEEKRRDSAGTLAFAGSSGDSPASEPMPAPRRRGGGLKRKANALGGSNFFSSAPSKRMLT 60

Query: 61   RDKFALL-HPPNHNGPFTRARLGPNNGAGTASGNAAEGISAAGSVKVEGSFLHSEVQRGD 120
            R+K  L    P HNGP TRAR  P+     A G  +E ++ A  V  +G     E     
Sbjct: 61   REKAMLASFSPVHNGPLTRARQAPSIMPSAADGVKSEVLNVA--VGADGEKPKEE----- 120

Query: 121  TLVAAAEELNKASR-LANLEASFVADFESIKSRGMNAHVVPNHCGWFSWTKVHPIEERSM 180
                  EE NKA R    LEA   ADFE+I+SR  N HVVPNHCGWFSW K+HP+EERS+
Sbjct: 121  ------EERNKAIREWEALEAKIEADFEAIRSRDSNVHVVPNHCGWFSWEKIHPLEERSL 180

Query: 181  PSFFSGNSGTRSPDIYIEIRNWIMKKFHANPSTQIESKDVSEMEIGELEARQEVMEFLDH 240
            PSFF+G    R+ ++Y EIRNWIM KFH+NP+ QIE KD++E+E+G+ EA+QEVMEFLD+
Sbjct: 181  PSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIELKDLTELEVGDSEAKQEVMEFLDY 240

Query: 241  WGLINFHPFLSADSTST-SDVDDENQKDSLVEKLFHFETLESSPSVV--PKTNVTTAPPR 300
            WGLINFHPF   D+ ST SD DD   K+SL+  L+ F+  E+ P +V  P+      P  
Sbjct: 241  WGLINFHPFPPTDTGSTASDHDDLGDKESLLNSLYRFQVDEACPPLVHKPRFTAQATPSG 300

Query: 301  LLRESAISEEMVRPEGPSVEYHCNSCSGDCSRKRYHCQKQADFDLCSECFNNGKFDSDMS 360
            L  +   ++E+++ EGP+VEYHCNSCS DCSRKRYHC KQADFDLC+ECFN+GKF SDMS
Sbjct: 301  LFPDPMAADELLKQEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMS 360

Query: 361  SSDFILMESAEVPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQ 420
            SSDFILME AE PG   GKWTDQETLLLLEALE++KENWNEIAEHVATKTKAQC+LHF+Q
Sbjct: 361  SSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQ 420

Query: 421  MPIEDSFLESENNDEVGAKETVVPPSNENDSSVPMDITESMDNKTTRKEASNVENASK-E 480
            MPIED+FL+  +  +  +K+T     +++D+SV  D  E  +NK    E   ++   + E
Sbjct: 421  MPIEDAFLDQIDYKDPISKDTTDLAVSKDDNSVLKDAPEEAENKKRVDEDETMKEVPEPE 480

Query: 481  DTVEVKVGQDNSKSKDV-----EVKA-----ALDNSKSEDGGQKVSEDIALNALREAFEA 540
            D  E KV Q++SK  D      E++A      L+ +  E    +  E+IAL AL EAFE 
Sbjct: 481  DGNEEKVSQESSKPGDASEETNEMEAEQKTPKLETAIEERCKDEADENIALKALTEAFED 540

Query: 541  IGYVLTSDQHPLSFSGVGNPVMALAAFLARLVGSDVAGASAHFSLKSISQKSPSLDLATR 600
            +G+  T +    SF+ +GNPVM LAAFL RL GSDVA ASA  S+KS+   S  L LATR
Sbjct: 541  VGHSSTPEA-SFSFADLGNPVMGLAAFLVRLAGSDVATASARASIKSLHSNSGML-LATR 600

Query: 601  HCFILEDPLDDKAQANSERVVNVEAQQNVNEQCEKQRKDNSTSVLDDRALSTTNIDYKNG 660
            HC+ILEDP D+K      +  + +A+ N          DNS                   
Sbjct: 601  HCYILEDPPDNKKDPTKSKSCSADAEGN---------DDNS------------------- 660

Query: 661  ESETEETTMENRNSSDATKEHDPMVNHGSDGTNKLKELTEPEAQQNVNEQCEKQRKDNST 720
                                      H  D         +PE         EK +K    
Sbjct: 661  --------------------------HKDD---------QPE---------EKSKKAEEV 720

Query: 721  SV-LDDRALSTTNIDYKNGESVTEETTMENRNSSDATKEHDPMVNHGSDGTNKLKELTEP 780
            S+  DDR +  T+   +  +SV+EE    +R                 + T KL  + E 
Sbjct: 721  SLNSDDREMPDTDTGKETQDSVSEEKQPGSRT---------------ENSTTKLDAVQEK 780

Query: 781  EVPKDDRTGIVKETENMESKLTTNTFEKLGEETSFEKPSQSTLLSKDIHISDLQYAEKTE 840
               K                +TT+  EK         PSQ     K++    L+   K  
Sbjct: 781  RSSK---------------PVTTDNSEK---PVDIICPSQDKCSGKELQ-EPLKDGNKLS 840

Query: 841  IQRQDPSPSVNTSKIDDVPNPLPSVNELQPLFAATSVKVASSDVAMVSDPRDKSEPAQT- 900
             + +D S S  +    D   P                  AS DV M    + + +P    
Sbjct: 841  SENKDASQSTVSQSAADASQP-----------------EASRDVEMKDTLQSEKDPEDVV 900

Query: 901  ----ETSKSLVDQGASKVSDSLPTEENATPQPVKQNPVLDKGT-DDNQSKNNEEENSKCT 960
                E  +   ++GA+ V  +   +++ + QP+      + GT   N +   ++E   C 
Sbjct: 901  KTVGEKVQLAKEEGANDVLST--PDKSVSQQPIGSASAPENGTAGGNPNIEGKKEKDICE 954

Query: 961  SKKEE-KVDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLHKLESKLAFFN 1020
              K++  ++KLKRAA++ ++AAAVKAK LA QEEDQIRQL+  LIEKQLHKLE+KL+ FN
Sbjct: 961  GTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIEKQLHKLEAKLSIFN 954

Query: 1021 DMDNVSMRVREQLDRSKQRLFQERAQIIAARLGLPASASRGVAPVLPGNRMARNFPNSVP 1067
            + ++++MRVREQL+RS+QRL+ ERAQIIAARLG+P S S   +  LP NR+A NF N   
Sbjct: 1021 EAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSSKAS--LPTNRIAANFANVAQ 954

[Close]

BLAST of CmaCh11G011040 vs. TAIR 10
Match: AT4G34430.3 (DNA-binding family protein )

HSP 1 Score: 653.7 bits (1685), Expect = 2.6e-187
Identity = 473/1096 (43.16%), Postives = 616/1096 (56.20%), Query Frame = 0


Query: 1    MEEKRRD-AGNL--PANTTDSPSSEP-PSSRRRAGAQKRKVSALGGSN-SSSAPSKR-VT 60
            MEEKRRD AG L    ++ DSP+SEP P+ RRR G  KRK +ALGGSN  SSAPSKR +T
Sbjct: 1    MEEKRRDSAGTLAFAGSSGDSPASEPMPAPRRRGGGLKRKANALGGSNFFSSAPSKRMLT 60

Query: 61   RDKFALL-HPPNHNGPFTRARLGPNNGAGTASGNAAEGISAAGSVKVEGSFLHSEVQRGD 120
            R+K  L    P HNGP TRAR  P+     A G  +E ++ A  V  +G     E     
Sbjct: 61   REKAMLASFSPVHNGPLTRARQAPSIMPSAADGVKSEVLNVA--VGADGEKPKEE----- 120

Query: 121  TLVAAAEELNKASR-LANLEASFVADFESIKSRGMNAHVVPNHCGWFSWTKVHPIEERSM 180
                  EE NKA R    LEA   ADFE+I+SR  N HVVPNHCGWFSW K+HP+EERS+
Sbjct: 121  ------EERNKAIREWEALEAKIEADFEAIRSRDSNVHVVPNHCGWFSWEKIHPLEERSL 180

Query: 181  PSFFSGNSGTRSPDIYIEIRNWIMKKFHANPSTQIESKDVSEMEIGELEARQEVMEFLDH 240
            PSFF+G    R+ ++Y EIRNWIM KFH+NP+ QIE KD++E+E+G+ EA+QEVMEFLD+
Sbjct: 181  PSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIELKDLTELEVGDSEAKQEVMEFLDY 240

Query: 241  WGLINFHPFLSADSTST-SDVDDENQKDSLVEKLFHFETLESSPSVV--PKTNVTTAPPR 300
            WGLINFHPF   D+ ST SD DD   K+SL+  L+ F+  E+ P +V  P+      P  
Sbjct: 241  WGLINFHPFPPTDTGSTASDHDDLGDKESLLNSLYRFQVDEACPPLVHKPRFTAQATPSG 300

Query: 301  LLRESAISEEMVRPEGPSVEYHCNSCSGDCSRKRYHCQKQADFDLCSECFNNGKFDSDMS 360
            L  +   ++E+++ EGP+VEYHCNSCS DCSRKRYHC KQADFDLC+ECFN+GKF SDMS
Sbjct: 301  LFPDPMAADELLKQEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMS 360

Query: 361  SSDFILMESAEVPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQ 420
            SSDFILME AE PG   GKWTDQETLLLLEALE++KENWNEIAEHVATKTKAQC+LHF+Q
Sbjct: 361  SSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQ 420

Query: 421  MPIEDSFLESENNDEVGAKETVVPPSNENDSSVPMDITESMDNKTTRKEASNVENASK-E 480
            MPIED+FL+  +  +  +K+T     +++D+SV  D  E  +NK    E   ++   + E
Sbjct: 421  MPIEDAFLDQIDYKDPISKDTTDLAVSKDDNSVLKDAPEEAENKKRVDEDETMKEVPEPE 480

Query: 481  DTVEVKVGQDNSKSKDV-----EVKA-----ALDNSKSEDGGQKVSEDIALNALREAFEA 540
            D  E KV Q++SK  D      E++A      L+ +  E    +  E+IAL AL EAFE 
Sbjct: 481  DGNEEKVSQESSKPGDASEETNEMEAEQKTPKLETAIEERCKDEADENIALKALTEAFED 540

Query: 541  IGYVLTSDQHPLSFSGVGNPVMALAAFLARLVGSDVAGASAHFSLKSISQKSPSLDLATR 600
            +G+  T +    SF+ +GNPVM LAAFL RL GSDVA ASA  S+KS+   S  L LATR
Sbjct: 541  VGHSSTPEA-SFSFADLGNPVMGLAAFLVRLAGSDVATASARASIKSLHSNSGML-LATR 600

Query: 601  HCFILEDPLDDKAQANSERVVNVEAQQNVNEQCEKQRKDNSTSVLDDRALSTTNIDYKNG 660
            HC+ILEDP D+K      +  + E              DNS                   
Sbjct: 601  HCYILEDPPDNKKDPTKSKSADAEGND-----------DNS------------------- 660

Query: 661  ESETEETTMENRNSSDATKEHDPMVNHGSDGTNKLKELTEPEAQQNVNEQCEKQRKDNST 720
                                      H  D         +PE         EK +K    
Sbjct: 661  --------------------------HKDD---------QPE---------EKSKKAEEV 720

Query: 721  SV-LDDRALSTTNIDYKNGESVTEETTMENRNSSDATKEHDPMVNHGSDGTNKLKELTEP 780
            S+  DDR +  T+   +  +SV+EE    +R                 + T KL  + E 
Sbjct: 721  SLNSDDREMPDTDTGKETQDSVSEEKQPGSRT---------------ENSTTKLDAVQEK 780

Query: 781  EVPKDDRTGIVKETENMESKLTTNTFEKLGEETSFEKPSQSTLLSKDIHISDLQYAEKTE 840
               K                +TT+  EK         PSQ     K++    L+   K  
Sbjct: 781  RSSK---------------PVTTDNSEK---PVDIICPSQDKCSGKELQ-EPLKDGNKLS 840

Query: 841  IQRQDPSPSVNTSKIDDVPNPLPSVNELQPLFAATSVKVASSDVAMVSDPRDKSEPAQT- 900
             + +D S S  +    D   P                  AS DV M    + + +P    
Sbjct: 841  SENKDASQSTVSQSAADASQP-----------------EASRDVEMKDTLQSEKDPEDVV 900

Query: 901  ----ETSKSLVDQGASKVSDSLPTEENATPQPVKQNPVLDKGT-DDNQSKNNEEENSKCT 960
                E  +   ++GA+ V  +   +++ + QP+      + GT   N +   ++E   C 
Sbjct: 901  KTVGEKVQLAKEEGANDVLST--PDKSVSQQPIGSASAPENGTAGGNPNIEGKKEKDICE 952

Query: 961  SKKEE-KVDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEKQLHKLESKLAFFN 1020
              K++  ++KLKRAA++ ++AAAVKAK LA QEEDQIRQL+  LIEKQLHKLE+KL+ FN
Sbjct: 961  GTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIEKQLHKLEAKLSIFN 952

Query: 1021 DMDNVSMRVREQLDRSKQRLFQERAQIIAARLGLPASASRGVAPVLPGNRMARNFPNSVP 1067
            + ++++MRVREQL+RS+QRL+ ERAQIIAARLG+P S S   +  LP NR+A NF N   
Sbjct: 1021 EAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSSKAS--LPTNRIAANFANVAQ 952

[Close]

BLAST of CmaCh11G011040 vs. TAIR 10
Match: AT4G34430.4 (DNA-binding family protein )

HSP 1 Score: 651.0 bits (1678), Expect = 1.7e-186
Identity = 474/1097 (43.21%), Postives = 619/1097 (56.43%), Query Frame = 0


Query: 1    MEEKRRD-AGNL--PANTTDSPSSEP-PSSRRRAGAQKRKVSALGGSN-SSSAPSKR-VT 60
            MEEKRRD AG L    ++ DSP+SEP P+ RRR G  KRK +ALGGSN  SSAPSKR +T
Sbjct: 1    MEEKRRDSAGTLAFAGSSGDSPASEPMPAPRRRGGGLKRKANALGGSNFFSSAPSKRMLT 60

Query: 61   RDKFALL-HPPNHNGPFTRARLGPNNGAGTASGNAAEGISAAGSVKVEGSFLHSEVQRGD 120
            R+K  L    P HNGP TRAR  P+     A G  +E ++ A  V  +G     E     
Sbjct: 61   REKAMLASFSPVHNGPLTRARQAPSIMPSAADGVKSEVLNVA--VGADGEKPKEE----- 120

Query: 121  TLVAAAEELNKASR-LANLEASFVADFESIKSRGMNAHVVPNHCGWFSWTKVHPIEERSM 180
                  EE NKA R    LEA   ADFE+I+SR  N HVVPNHCGWFSW K+HP+EERS+
Sbjct: 121  ------EERNKAIREWEALEAKIEADFEAIRSRDSNVHVVPNHCGWFSWEKIHPLEERSL 180

Query: 181  PSFFSGNSGTRSPDIYIEIRNWIMKKFHANPSTQIESKDVSEMEIGELEARQEVMEFLDH 240
            PSFF+G    R+ ++Y EIRNWIM KFH+NP+ QIE KD++E+E+G+ EA+QEVMEFLD+
Sbjct: 181  PSFFNGKLEGRTSEVYREIRNWIMGKFHSNPNIQIELKDLTELEVGDSEAKQEVMEFLDY 240

Query: 241  WGLINFHPFLSADSTST-SDVDDENQKDSLVEKLFHFETLESSPSVV--PKTNVTTAPPR 300
            WGLINFHPF   D+ ST SD DD   K+SL+  L+ F+  E+ P +V  P+      P  
Sbjct: 241  WGLINFHPFPPTDTGSTASDHDDLGDKESLLNSLYRFQVDEACPPLVHKPRFTAQATPSG 300

Query: 301  LLRESAISEEMVRPEGPSVEYHCNSCSGDCSRKRYHCQKQADFDLCSECFNNGKFDSDMS 360
            L  +   ++E+++ EGP+VEYHCNSCS DCSRKRYHC KQADFDLC+ECFN+GKF SDMS
Sbjct: 301  LFPDPMAADELLKQEGPAVEYHCNSCSADCSRKRYHCPKQADFDLCTECFNSGKFSSDMS 360

Query: 361  SSDFILMESAEVPGASGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQ 420
            SSDFILME AE PG   GKWTDQETLLLLEALE++KENWNEIAEHVATKTKAQC+LHF+Q
Sbjct: 361  SSDFILMEPAEAPGVGSGKWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHFLQ 420

Query: 421  MPIEDSFLESENNDEVGAKETVVPPSNENDSSVPMDITESMDNKTTRKEASNVENASK-E 480
            MPIED+FL+  +  +  +K+T     +++D+SV  D  E  +NK    E   ++   + E
Sbjct: 421  MPIEDAFLDQIDYKDPISKDTTDLAVSKDDNSVLKDAPEEAENKKRVDEDETMKEVPEPE 480

Query: 481  DTVEVKVGQDNSKSKDV-----EVKA-----ALDNSKSEDGGQKVSEDIALNALREAFEA 540
            D  E KV Q++SK  D      E++A      L+ +  E    +  E+IAL AL EAFE 
Sbjct: 481  DGNEEKVSQESSKPGDASEETNEMEAEQKTPKLETAIEERCKDEADENIALKALTEAFED 540

Query: 541  IGYVLTSDQHPLSFSGVGNPVMALAAFLARLVGSDVAGASAHFSLKSISQKSPSLDLATR 600
            +G+  T +    SF+ +GNPVM LAAFL RL GSDVA ASA  S+KS+   S  L LATR
Sbjct: 541  VGHSSTPEA-SFSFADLGNPVMGLAAFLVRLAGSDVATASARASIKSLHSNSGML-LATR 600

Query: 601  HCFILEDPLDDKAQANSERVVNVEAQQNVNEQCEKQRKDNSTSVLDDRALSTTNIDYKNG 660
            HC+ILEDP D+K      +  + +A+ N          DNS                   
Sbjct: 601  HCYILEDPPDNKKDPTKSKSCSADAEGN---------DDNS------------------- 660

Query: 661  ESETEETTMENRNSSDATKEHDPMVNHGSDGTNKLKELTEPEAQQNVNEQCEKQRKDNST 720
                                      H  D         +PE         EK +K    
Sbjct: 661  --------------------------HKDD---------QPE---------EKSKKAEEV 720

Query: 721  SV-LDDRALSTTNIDYKNGESVTEETTMENRNSSDATKEHDPMVNHGSDGTNKLKELTEP 780
            S+  DDR +  T+   +  +SV+EE    +R                 + T KL  + E 
Sbjct: 721  SLNSDDREMPDTDTGKETQDSVSEEKQPGSRT---------------ENSTTKLDAVQEK 780

Query: 781  EVPKDDRTGIVKETENMESKLTTNTFEKLGEETSFEKPSQSTLLSKDIHISDLQYAEKTE 840
               K                +TT+  EK         PSQ     K++    L+   K  
Sbjct: 781  RSSK---------------PVTTDNSEK---PVDIICPSQDKCSGKELQ-EPLKDGNKLS 840

Query: 841  IQRQDPSPSVNTSKIDDVPNPLPSVNELQPLFAATSVKVASSDVAMVSDPRDKSEPAQT- 900
             + +D S S  +    D   P                  AS DV M    + + +P    
Sbjct: 841  SENKDASQSTVSQSAADASQP-----------------EASRDVEMKDTLQSEKDPEDVV 900

Query: 901  ----ETSKSLVDQGASKVSDSLPTEENATPQPVKQNPVLDKGT-DDNQSKNNEEENSKCT 960
                E  +   ++GA+ V  +   +++ + QP+      + GT   N +   ++E   C 
Sbjct: 901  KTVGEKVQLAKEEGANDVLST--PDKSVSQQPIGSASAPENGTAGGNPNIEGKKEKDICE 955

Query: 961  SKKEE-KVDKLKRAAVTTLAAAAVKAKVLANQEEDQIRQLAMILIEK-QLHKLESKLAFF 1020
              K++  ++KLKRAA++ ++AAAVKAK LA QEEDQIRQL+  LIEK QLHKLE+KL+ F
Sbjct: 961  GTKDKYNIEKLKRAAISAISAAAVKAKNLAKQEEDQIRQLSGSLIEKQQLHKLEAKLSIF 955

Query: 1021 NDMDNVSMRVREQLDRSKQRLFQERAQIIAARLGLPASASRGVAPVLPGNRMARNFPNSV 1067
            N+ ++++MRVREQL+RS+QRL+ ERAQIIAARLG+P S S   +  LP NR+A NF N  
Sbjct: 1021 NEAESLTMRVREQLERSRQRLYHERAQIIAARLGVPPSMSSKAS--LPTNRIAANFANVA 955

[Close]

BLAST of CmaCh11G011040 vs. TAIR 10
Match: AT1G21700.1 (SWITCH/sucrose nonfermenting 3C )

HSP 1 Score: 171.4 bits (433), Expect = 3.9e-42
Identity = 150/502 (29.88%), Postives = 221/502 (44.02%), Query Frame = 0


Query: 88  AAEGISAAGSVKVEGS------FLHSEVQRGDTLVAAAEELNKASRLAN---LEASFVAD 147
           AAE     G  + +GS          ++Q   T+ A + +L ++   ++   +    + D
Sbjct: 104 AAERAGLIGETRGQGSLPALENISFGQLQALSTVPADSLDLERSDGSSSAYVISPPPIMD 163

Query: 148 FESIKSR-GMNAHVVPNHCGWFSWTKVHPIEERSMPSFFSGNSGTRSPDIYIEIRNWIMK 207
            E +  R G   HV+P H  WF+   V  +E + +P FFSG S   +P+ Y+E RN I+ 
Sbjct: 164 GEGVVKRFGDLVHVLPMHSDWFAPNTVDRLERQVVPQFFSGKSPNHTPESYMEFRNAIVS 223

Query: 208 KFHANPSTQIESKDVSEMEIG-ELEARQEVMEFLDHWGLINFHPFLSADSTSTSDVDDEN 267
           K+  NP   +   D   +  G ++E    V  FLDHWG+IN+     +      DV D  
Sbjct: 224 KYVENPEKTLTISDCQGLVDGVDIEDFARVFRFLDHWGIINYCATAQSHPGPLRDVSDV- 283

Query: 268 QKDSLVEKLFHFETLESSPSVV--PKTN-------VTTAPPRLLRESAISEEMVRPEGPS 327
           ++D+  E       L S  S++   K N       V ++ P L  +S   +  +R     
Sbjct: 284 REDTNGEVNVPSAALTSIDSLIKFDKPNCRHKGGEVYSSLPSLDGDSPDLDIRIREH--L 343

Query: 328 VEYHCNSCSGDCSRKRYHCQKQADFDLCSECFNNGKFDSDMSSSDFILMESAEVPG-ASG 387
            + HCN CS       +  QK+ D  LC +CF++G+F    S  DF+ ++  +  G   G
Sbjct: 344 CDSHCNHCSRPLPTVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRVDPMKFYGDQDG 403

Query: 388 GKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFIQMPIEDSFLESENNDEVG 447
             WTDQETLLLLEA+ELY ENW +IA+HV +K+KAQCILHF+++P+ED  L+   N EV 
Sbjct: 404 DNWTDQETLLLLEAVELYNENWVQIADHVGSKSKAQCILHFLRLPVEDGLLD---NVEVS 463

Query: 448 AKETVVPPSNENDSSVPMDITESMDNKTTRKEASNVENASKEDTVEVKVGQDNSKSKDVE 507
                  P+N              D+K T                   +   + +  D E
Sbjct: 464 GVTNTENPTN------------GYDHKGTDSNGD--------------LPGYSEQGSDTE 523

Query: 508 VKAALDNSKSEDGGQKVSEDIALNALREAFEAIGYVLTSDQHPLSFSGVGNPVMALAAFL 567
           +K                                         L F    NPVMAL AFL
Sbjct: 524 IK-----------------------------------------LPFVKSPNPVMALVAFL 532

Query: 568 ARLVGSDVAGASAHFSLKSISQ 569
           A  VG  VA + AH SL  +S+
Sbjct: 584 ASAVGPRVAASCAHESLSVLSE 532

HSP 2 Score: 51.6 bits (122), Expect = 4.6e-06
Identity = 37/124 (29.84%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 906  KQNPVLDKGTDDNQSKNNEEENSKCTSKKEEKVDKLKRAAVTTLAAAAVKAKVLANQEED 965
            K+  +LD         +     +   ++     DK+  A    L+AAA KAK+ A+ EE 
Sbjct: 544  KEASLLDGENQQQDGAHKTSSQNGAEAQTPLPQDKVMAAFRAGLSAAATKAKLFADHEER 603

Query: 966  QIRQLAMILIEKQLHKLESKLAFFNDMDNVSMRVREQLDRSKQRLFQERAQIIAARLGLP 1025
            +I++L+  ++  QL ++E KL  F +++ + M+  EQ+++++QR   ERA++++AR G P
Sbjct: 604  EIQRLSANIVNHQLKRMELKLKQFAEIETLLMKECEQVEKTRQRFSAERARMLSARFGSP 663

Query: 1026 ASAS 1030
               S
Sbjct: 664  GGIS 667

The following BLAST results are available for this feature:

BLAST of CmaCh11G011040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VY05	9.7e-187	43.25	SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana OX=3702 GN=SWI3D PE=1 SV=3	[more]
Q9XI07	5.6e-41	29.88	SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana OX=3702 GN=SWI3C PE=1 SV=1	[more]
O14470	2.3e-39	29.62	SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe (strain 972 ...	[more]
Q53KK6	1.8e-36	33.10	SWI/SNF complex subunit SWI3C homolog OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q6PDG5	6.2e-32	31.11	SWI/SNF complex subunit SMARCC2 OS=Mus musculus OX=10090 GN=Smarcc2 PE=1 SV=2	[more]

BLAST of CmaCh11G011040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34430.1	6.9e-188	43.25	DNA-binding family protein	[more]
AT4G34430.2	6.9e-188	43.25	DNA-binding family protein	[more]
AT4G34430.3	2.6e-187	43.16	DNA-binding family protein	[more]
AT4G34430.4	1.7e-186	43.21	DNA-binding family protein	[more]
AT1G21700.1	3.9e-42	29.88	SWITCH/sucrose nonfermenting 3C	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000433	Zinc finger, ZZ-type	SMART	SM00291	zz_5	coord: 306..350 e-value: 2.3E-10 score: 50.5
IPR000433	Zinc finger, ZZ-type	PFAM	PF00569	ZZ	coord: 309..344 e-value: 2.6E-8 score: 33.6
IPR000433	Zinc finger, ZZ-type	PROSITE	PS01357	ZF_ZZ_1	coord: 312..338
IPR000433	Zinc finger, ZZ-type	PROSITE	PS50135	ZF_ZZ_2	coord: 306..352 score: 9.304814
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 365..413 e-value: 2.7E-12 score: 56.8
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 361..411 score: 7.456568
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 385..410 e-value: 6.47437E-4 score: 36.3994
None	No IPR available	GENE3D	1.10.10.60		coord: 364..415 e-value: 2.3E-18 score: 67.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 812..839
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 701..727
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 427..486
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 450..486
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 862..938
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 876..916
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 603..773
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 637..675
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 433..449
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1035..1076
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 728..771
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 817..836
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 917..938
None	No IPR available	PANTHER	PTHR12802:SF39	SWI/SNF COMPLEX SUBUNIT SWI3D	coord: 44..1063
None	No IPR available	PANTHER	PTHR12802	SWI/SNF COMPLEX-RELATED	coord: 44..1063
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 308..358
IPR043145	Zinc finger, ZZ-type superfamily	GENE3D	3.30.60.90		coord: 303..353 e-value: 1.1E-8 score: 36.7
IPR007526	SWIRM domain	PFAM	PF04433	SWIRM	coord: 153..238 e-value: 1.2E-20 score: 73.6
IPR007526	SWIRM domain	PROSITE	PS50934	SWIRM	coord: 150..247 score: 20.096752
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 156..240 e-value: 6.3E-22 score: 79.3
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 367..409 e-value: 8.0E-12 score: 45.2
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 367..415 score: 10.094183
IPR032451	SMARCC, C-terminal	PFAM	PF16495	SWIRM-assoc_1	coord: 947..1025 e-value: 4.5E-23 score: 81.0
IPR017884	SANT domain	PROSITE	PS51293	SANT	coord: 364..415 score: 21.834024
IPR041984	Rsc8/Ssr1/Ssr2, zinc finger, ZZ-type	CDD	cd02336	ZZ_RSC8	coord: 310..354 e-value: 1.99425E-22 score: 88.9144
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 157..239
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 364..419

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G011040.1	CmaCh11G011040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding