CmaCh11G010910 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G010910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	chromatin remodeling protein SHL isoform X1
Location	Cma_Chr11: 6009492 .. 6013397 (-)
RNA-Seq Expression	CmaCh11G010910
Synteny	CmaCh11G010910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAGTAAAGTTTTGGCCTTGGCATATGCCGCCACGTGACCAGCAGATCCACTCCTCCGCCGGACATTTTTCCTCAGCTGAACTCCGGCGATTCATTTCCCGGCCAACTTCTCTCCATTTCCTCTTCGAACTTCTAATTCCAGGGCTCGCTTTTGATGGCCAAACCCAAGGCTCTGAGGCAAACCCTAGATTCCTACACTGTCAAACGCATCAACAAAACCATTAAAGGTAAAACAAGCCACTTCCTTCTCTTTCTCTTCTCCTTTTTTTTGTTGGAATCTTTCACATGGTCCCGTTTTCCCGTCTGTGTCTGATCTTCCGGAATTTTACGGTTTTTGTGCTTCTTAGCCGGCGACTGCGTGCTTATGAGGCCCTCTGAACCCTCGAAACCGTCGTATGTGGCCAAGATTGAGAAGATTGAGGCGGATTCTCGCGGAGCCAATGTGAAGGTCCATGTTCGCTGGTATTACCGGCCGGAGGAATCGATTGGTGGTCGGAGACAGTTTCATGGCTCGAAGGAGTTGTTTCTCTCCGACCATTACGACGTTCAAAGCGCAGATACCATCGAGGGAAAGTGTACGGTGCATACATTTAAGAATTATACCAAGCTTGATGCTGTTGGGAATGAGGACTATTTTTCCCGTTTCGACTATAATTCCGCTACTGGGGCTTTCACTCCCGATCGAGTGGCTGTGTGAGTTTCTTTTTAATTCAATTTTTGGTTTAGATATCCTGTTTGTGTGCTTTACATTCTGTACTCCTGAATTTGATCATTCTGATTTTACTTGAAAATCACTTGACATGGGAAGAAATTGGTTTCTGTAGATTTCTTTAGCAAAGTTTTACTAGTTTAGCTGCATTGTGGTTCCAGCATTGATTGTCTTGGTTTTCAGTTCATAACTCTTATACAGTTCATGAATTCAAGTACCAAAAGCTCTTTCAATTGATGTTCTTATTGCTATTTGAAGATCATTCTGTCCAGCATTCCTTTCTTTTTAACCGTTTTATGTATAGCATTACATGTCATTTAAGCTCATGAATCTCCTTTTTGCATAGCTTTACCCGTTTCTTCTGGTGCAAAATTTCAGTTGATTTTATGTTGCAGATATTGCAAATGTGAGATGCCTTATAATCCCGATGACCTAATGGTTCAGTGCGAGAGATGCAGTGATTGGTAAGCTGGGTGTGTATTATGCTATTGGTTTCTTTTGCAGCCTTAGCTTATGTGCTTATGAAGGTATTTATTGTTCATATTGGCTTGTGTATCTTCTGTAATTTGGAGCCTACGGAATAGAAGCATAATTACAGTAAAACAAATTGACGTAAATTTATCTGGAATTGTAATAATGTACATTCTTTCTTTCAAATCATAAATGAGAAGTAACCTATCTTGGTTTCTGGGTCCTTGCATAAACATTATCTACCCCAGATATGTGGCTCTGTTTGTTCTTTCTTTTCTCTTCATTTCTTTTTAATAGAGATGGAGTAAAAAATAGAAGAGTTCTGATCGACACAAGGATATTAGATAAAAAACTCTGGATGCTCTCTGAAGTGTTGAGCTTTGGCTTCTAGGATTCAGGTGGTGCGCATAAAATGTTACCCGGAGTCCAGAAATGCTTCACATAAGAGAAAAACATACTCTGTAGTTGTGAGATCCCACATCGGTTGGAGAGGGGAGCGACACATTCCTTATAAGGGTGTGAAAGTCTCTCCCTACCAGACACGTTTTAAAACCTTGAGGGGAAGTTCAGAAGGGAAAGCACAAAGAGGACAATATCTGCTACCAGTGGGCTTGGGTTGTTACAAATGGTATTAGAGCCAGATATCGAGCAGTTTGCCAGCAAGGATGTTGGCCCCGAAGGGAGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTAGAAATCTCTCTCTACCATATGCATTTTAAAACCTTGAGGGGAAGCCGAGAAGGGAAAACCCAAATTGGATAATATCTGCTAACAATGGGCTTGAGCTGTTATAGTAGTGAAGGATGACATTAAAGTCAAACATAAAATACATGGTTAGATATGAATGTATTCGTGACTGGTTCATATGAATCACTAGGAATCTTAGTTAATTGAAAAAACATGTTATTTCCTATACAAAAAAAAATTATTAGAAGATTTAATTTGAAATAGGAGTTATGCTTCAGCTGAAACAATTTTCCTTAATGATCTTATATTTATATTGATCAAAGATATTGGAAATTAAAATGATTTAGGTTTCATTTAAATCTCATTTTAATTACAACATCCGATTAGCGTACTTTATGACCCTTTTGTAACTACACTAGGATGCTTTCCATAAAATTAGTAGATAAAGGCTTTTTGGCCTGCTTTTGGGTGTGATTCTTTTCATTTTCTTAATGAGAAATCTCTTTTATTGGAGATGTCCTCCAAGCTTCTAGGTTTAGGAATCATCTATATTTGGTTTCTTTGATGTCATCCCTTGTTGGCAACCCCTTGAACAAGGAAAAAGGGAATCCCTTGGCTTCAACGTACTACTACCTCATTCTTATGGAATTTAATGTTTCTATAATCTTTGGTTGGAAAGCAACGACAGGATTTTACTGACAAGGAAACCCATATAGTGAAGTTCATTTACAGTGTTTTTTGTGTAGCACTCAAATCATGTAAATTATACCTTTTGTTCAATAGCTGTAGTTTAGTTGGAACTTTACATTAATTGGAAGTGTTTAATTGATTTACCTTTGATGTCTGCTTTGCTAAGATACTTTGTGAAGCATTCGCTCGATGTATGGCTTTATAGCATAAAATCTGAATCTTAAAGTGGATGATATTTTTGATTTAGGTTTCATCCTGCTTGTATAGAAATGTCTGCAGAAAAAGCTAAAAAACTTGACCACTTCTTCTGTGAAAGTTGTTCTCCAGAGGGTCAAAAGAAGTTGCAGAATTCACAGTCTACATCTAAAATTGCAGAGACAAAGGTATTTGTAAAGCTGCTGAATATAAATGCCCTTTGTTGAATGTCACTGTTTGGATTGTTTGTTTTGGTCAAACTGCATAATCTAGTTCCATCTTGTTTTAGTGAGCCTTAAGGTAGCAGGTGACAATCATATCATGCACATTCTTTTTTAGTTTTTGGTTGAAGTTGATTCTTCTCTTAGGTATCTCCTCCTCATTTTAATGGCAACCAAATGTATTAAGGTTCGATAGTGATGTTATGGGAGTAGTCAAAATGTGCCCAAGTTGGCTCAAACATTCACAAAAAGAAAAGAAAAACTTGGAGACCTTTTGAACATGGAAGTGTTACTAGTAGGCTTGGTTACGGTAATAATAATGTGGGCGAGTTAGATGCTTAGTTCAAGCTTTCATTTCATTTTGATTAGACTTATATTGTGGTAATCTTTAGCGTGACGAATAGTGGTTGGTTTTTGTTATGAAAAGATGGTGGTATTATGATGAATAATATGTTCCAATGTTGTTGCAGGTGGATTCAAAACGACGACGGAGGTGATGATAGTGTAAATAAACAAAATACATTGACTTAGAGTCGTTAAGAACCCGAGCTTCCAAATTCCTAATGAGTTGGAACAACTGCATAGATTTAGGATCATGTAAATACTACCTCCTGTGTGTGTCCACATTCATTTCTAGAAGAGGGACTGGTTTGAAATGTACTGAAGTTCTTTTATTTGAATATAGGATCAACCATCACGAGAAAAATAACTCATGTATCTTATAAAAATTGTGAGGTGTCTTCATTTGTTCGATGTGAAATCTTCAACATGCTCCTCAAGAGGGTATCCCCTCTAGGTTCACATTTCTTGGTTCTCGAAAATACCCTCTAGATTCACCATTCTTGGCTCTCAATTTTTGATCGATTATTTATTTGGGT

mRNA sequence

GAAGTAAAGTTTTGGCCTTGGCATATGCCGCCACGTGACCAGCAGATCCACTCCTCCGCCGGACATTTTTCCTCAGCTGAACTCCGGCGATTCATTTCCCGGCCAACTTCTCTCCATTTCCTCTTCGAACTTCTAATTCCAGGGCTCGCTTTTGATGGCCAAACCCAAGGCTCTGAGGCAAACCCTAGATTCCTACACTGTCAAACGCATCAACAAAACCATTAAAGCCGGCGACTGCGTGCTTATGAGGCCCTCTGAACCCTCGAAACCGTCGTATGTGGCCAAGATTGAGAAGATTGAGGCGGATTCTCGCGGAGCCAATGTGAAGGTCCATGTTCGCTGGTATTACCGGCCGGAGGAATCGATTGGTGGTCGGAGACAGTTTCATGGCTCGAAGGAGTTGTTTCTCTCCGACCATTACGACGTTCAAAGCGCAGATACCATCGAGGGAAAGTGTACGGTGCATACATTTAAGAATTATACCAAGCTTGATGCTGTTGGGAATGAGGACTATTTTTCCCGTTTCGACTATAATTCCGCTACTGGGGCTTTCACTCCCGATCGAGTGGCTGTATATTGCAAATGTGAGATGCCTTATAATCCCGATGACCTAATGGTTCAGTGCGAGAGATGCAGTGATTGGTTTCATCCTGCTTGTATAGAAATGTCTGCAGAAAAAGCTAAAAAACTTGACCACTTCTTCTGTGAAAGTTGTTCTCCAGAGGGTCAAAAGAAGTTGCAGAATTCACAGTCTACATCTAAAATTGCAGAGACAAAGGTGGATTCAAAACGACGACGGAGGTGATGATAGTGTAAATAAACAAAATACATTGACTTAGAGTCGTTAAGAACCCGAGCTTCCAAATTCCTAATGAGTTGGAACAACTGCATAGATTTAGGATCATGTAAATACTACCTCCTGTGTGTGTCCACATTCATTTCTAGAAGAGGGACTGGTTTGAAATGTACTGAAGTTCTTTTATTTGAATATAGGATCAACCATCACGAGAAAAATAACTCATGTATCTTATAAAAATTGTGAGGTGTCTTCATTTGTTCGATGTGAAATCTTCAACATGCTCCTCAAGAGGGTATCCCCTCTAGGTTCACATTTCTTGGTTCTCGAAAATACCCTCTAGATTCACCATTCTTGGCTCTCAATTTTTGATCGATTATTTATTTGGGT

Coding sequence (CDS)

ATGGCCAAACCCAAGGCTCTGAGGCAAACCCTAGATTCCTACACTGTCAAACGCATCAACAAAACCATTAAAGCCGGCGACTGCGTGCTTATGAGGCCCTCTGAACCCTCGAAACCGTCGTATGTGGCCAAGATTGAGAAGATTGAGGCGGATTCTCGCGGAGCCAATGTGAAGGTCCATGTTCGCTGGTATTACCGGCCGGAGGAATCGATTGGTGGTCGGAGACAGTTTCATGGCTCGAAGGAGTTGTTTCTCTCCGACCATTACGACGTTCAAAGCGCAGATACCATCGAGGGAAAGTGTACGGTGCATACATTTAAGAATTATACCAAGCTTGATGCTGTTGGGAATGAGGACTATTTTTCCCGTTTCGACTATAATTCCGCTACTGGGGCTTTCACTCCCGATCGAGTGGCTGTATATTGCAAATGTGAGATGCCTTATAATCCCGATGACCTAATGGTTCAGTGCGAGAGATGCAGTGATTGGTTTCATCCTGCTTGTATAGAAATGTCTGCAGAAAAAGCTAAAAAACTTGACCACTTCTTCTGTGAAAGTTGTTCTCCAGAGGGTCAAAAGAAGTTGCAGAATTCACAGTCTACATCTAAAATTGCAGAGACAAAGGTGGATTCAAAACGACGACGGAGGTGA

Protein sequence

MAKPKALRQTLDSYTVKRINKTIKAGDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKNYTKLDAVGNEDYFSRFDYNSATGAFTPDRVAVYCKCEMPYNPDDLMVQCERCSDWFHPACIEMSAEKAKKLDHFFCESCSPEGQKKLQNSQSTSKIAETKVDSKRRRR

Homology

[Close]

BLAST of CmaCh11G010910 vs. ExPASy Swiss-Prot
Match: Q9FEN9 (Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.1e-85
Identity = 147/213 (69.01%), Postives = 176/213 (82.63%), Query Frame = 0


Query: 1   MAKPKALRQTLDSYTVKRINKTIKAGDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVH 60
           M K KA R+ L SY +K INK+I+ GD VLMR SEP KPSYVA++E IE D+RG++ KV 
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVR 60

Query: 61  VRWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKNYTKLDAVGNEDY 120
           VRWYYRPEESIGGRRQFHG+KE+FLSDH+D QSADTIEGKC VH+F +YTKLD+VGN+D+
Sbjct: 61  VRWYYRPEESIGGRRQFHGAKEVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDDF 120

Query: 121 FSRFDYNSATGAFTPDRVAVYCKCEMPYNPDDLMVQCERCSDWFHPACIEMSAEKAKKLD 180
           F RF+YNS TGAF PDRV V+CKCEMPYNPDDLMVQCE CS+WFHP+CI  + E+AKK D
Sbjct: 121 FCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEWFHPSCIGTTIEEAKKPD 180

Query: 181 HFFCESCSPEGQKKLQNSQSTSKIAETKVDSKR 214
           +F+CE CSP+ Q+ L NS STS   + KV+ KR
Sbjct: 181 NFYCEECSPQ-QQNLHNSNSTSNNRDAKVNGKR 212

[Close]

BLAST of CmaCh11G010910 vs. ExPASy Swiss-Prot
Match: F4JL28 (Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.1e-84
Identity = 147/209 (70.33%), Postives = 172/209 (82.30%), Query Frame = 0


Query: 2   AKPKALRQTLDSYTVKRINKTIKAGDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVHV 61
           +K K  R+ LDSYT+K  NK ++AGDCVLMRPS+  KP YVA++EKIEAD+R  NVKVH 
Sbjct: 10  SKIKTGRKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADARN-NVKVHC 69

Query: 62  RWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKNYTKLDAVGNEDYF 121
           RWYYRPEES+GGRRQFHG+KELFLSDH+DVQSA TIEGKC VHTFKNYT+L+ VG EDY+
Sbjct: 70  RWYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLENVGAEDYY 129

Query: 122 SRFDYNSATGAFTPDRVAVYCKCEMPYNPDDLMVQCERCSDWFHPACIEMSAEKAKKLDH 181
            RF+Y +ATGAFTPDRVAVYCKCEMPYNPDDLMVQCE C DW+HPAC+ M+ E+AKKLDH
Sbjct: 130 CRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDH 189

Query: 182 FFCESCSPEGQ-KKLQNSQSTSKIAETKV 210
           F C  CS +   KK QN  ++S   + KV
Sbjct: 190 FVCAECSSDDDVKKSQNGFTSSPADDVKV 217

[Close]

BLAST of CmaCh11G010910 vs. ExPASy Swiss-Prot
Match: F4JGB7 (Chromatin remodeling protein At4g04260 OS=Arabidopsis thaliana OX=3702 GN=At4g04260 PE=3 SV=2)

HSP 1 Score: 236.5 bits (602), Expect = 2.8e-61
Identity = 119/190 (62.63%), Postives = 144/190 (75.79%), Query Frame = 0


Query: 26  GDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKELFL 85
           GDCVLMRPS+  K  YVA++EKIEAD+R  NVKVH RWYY PEES GGRRQ HG+KELFL
Sbjct: 43  GDCVLMRPSDAGKAPYVARVEKIEADARN-NVKVHCRWYYCPEESHGGRRQLHGAKELFL 102

Query: 86  SDHYDVQSADTIEGKCTVHTFKNYTKLDAVGNEDYFSRFDYNSATGAFTPDRVAVYCKCE 145
           SDH+DVQSA TIEGKC VHTFKNYT+L+ VG EDY+  FDY +ATGAFTPDRVAVY KCE
Sbjct: 103 SDHFDVQSAHTIEGKCIVHTFKNYTRLENVGVEDYYCIFDYKAATGAFTPDRVAVYYKCE 162

Query: 146 MPYNPDDLMVQCERCSDWFHPACIEMSAEKAKKLDHFFCESCS--PEGQKKLQNSQSTSK 205
           MPYN D+LM +   C    H AC+ ++ E+AKKL+HF C  CS   +G K+ QN  ++S 
Sbjct: 163 MPYNSDELM-ELLLCHYRVHLACVGVTIEEAKKLEHFVCVECSSDEDGVKRFQNGFASST 222

Query: 206 IAETKVDSKR 214
             + K  +++
Sbjct: 223 TNDLKPSAEK 230

[Close]

BLAST of CmaCh11G010910 vs. ExPASy Swiss-Prot
Match: Q9P281 (BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens OX=9606 GN=BAHCC1 PE=1 SV=4)

HSP 1 Score: 66.2 bits (160), Expect = 5.1e-10
Identity = 44/134 (32.84%), Postives = 68/134 (50.75%), Query Frame = 0


Query: 16   VKRINKTIKAGDC-VLMRPSEPSKPSYVAKIEKIEADSRGANVKVHVRWYYRPEESIGGR 75
            + R  +T++ GDC V +    P+ P Y+ +IE +  +S G+N+ V V+W+Y PEE+  G+
Sbjct: 2508 IVRGEETLRVGDCAVFLSAGRPNLP-YIGRIESM-WESWGSNMVVKVKWFYHPEETKLGK 2567

Query: 76   RQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKNYTKL----DAVGNED-YFSRFDYNSA 135
            RQ  G   L+ S H D     TI  KC V   + Y ++         +D Y+    Y+  
Sbjct: 2568 RQCDGKNALYQSCHEDENDVQTISHKCQVVAREQYEQMARSRKCQDRQDLYYLAGTYDPT 2627

Query: 136  TGAF-TPDRVAVYC 143
            TG   T D V + C
Sbjct: 2628 TGRLVTADGVPILC 2639

[Close]

BLAST of CmaCh11G010910 vs. ExPASy Swiss-Prot
Match: Q3UHR0 (BAH and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Bahcc1 PE=1 SV=2)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09
Identity = 45/134 (33.58%), Postives = 68/134 (50.75%), Query Frame = 0


Query: 16   VKRINKTIKAGDC-VLMRPSEPSKPSYVAKIEKIEADSRGANVKVHVRWYYRPEESIGGR 75
            + R  +T++ GDC V +    P+ P Y+ +IE +  +S G+N+ V V+W+Y PEE+  G+
Sbjct: 2512 IVRGKETLRIGDCAVFLSAGRPNLP-YIGRIESL-WESWGSNMVVKVKWFYHPEETKLGK 2571

Query: 76   RQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKNYTKL----DAVGNED-YFSRFDYNSA 135
            RQ  G   L+ S H D     TI  KC V   + Y ++         +D Y+    Y+  
Sbjct: 2572 RQSDGKNALYQSCHEDENDVQTISHKCQVVGREQYEQMMRGRKYQDQQDLYYLAGTYDPT 2631

Query: 136  TGAF-TPDRVAVYC 143
            TG   T D V V C
Sbjct: 2632 TGRLVTADGVPVLC 2643

[Close]

BLAST of CmaCh11G010910 vs. TAIR 10
Match: AT4G22140.2 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 320.9 bits (821), Expect = 8.1e-88
Identity = 151/216 (69.91%), Postives = 179/216 (82.87%), Query Frame = 0


Query: 2   AKPKALRQTLDSYTVKRINKTIKAGDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVHV 61
           +K K  R+ LDSYT+K  NK ++AGDCVLMRPS+  KP YVA++EKIEAD+R  NVKVH 
Sbjct: 10  SKIKTGRKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADARN-NVKVHC 69

Query: 62  RWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKNYTKLDAVGNEDYF 121
           RWYYRPEES+GGRRQFHG+KELFLSDH+DVQSA TIEGKC VHTFKNYT+L+ VG EDY+
Sbjct: 70  RWYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLENVGAEDYY 129

Query: 122 SRFDYNSATGAFTPDRVAVYCKCEMPYNPDDLMVQCERCSDWFHPACIEMSAEKAKKLDH 181
            RF+Y +ATGAFTPDRVAVYCKCEMPYNPDDLMVQCE C DW+HPAC+ M+ E+AKKLDH
Sbjct: 130 CRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDH 189

Query: 182 FFCESCSPEGQ-KKLQNSQSTSKIAETKVDSKRRRR 217
           F C  CS +   KK QN  ++S   + KV++KRR+R
Sbjct: 190 FVCAECSSDDDVKKSQNGFTSSPADDVKVETKRRKR 224

[Close]

BLAST of CmaCh11G010910 vs. TAIR 10
Match: AT4G39100.1 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 316.6 bits (810), Expect = 1.5e-86
Identity = 147/213 (69.01%), Postives = 176/213 (82.63%), Query Frame = 0


Query: 1   MAKPKALRQTLDSYTVKRINKTIKAGDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVH 60
           M K KA R+ L SY +K INK+I+ GD VLMR SEP KPSYVA++E IE D+RG++ KV 
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVR 60

Query: 61  VRWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKNYTKLDAVGNEDY 120
           VRWYYRPEESIGGRRQFHG+KE+FLSDH+D QSADTIEGKC VH+F +YTKLD+VGN+D+
Sbjct: 61  VRWYYRPEESIGGRRQFHGAKEVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDDF 120

Query: 121 FSRFDYNSATGAFTPDRVAVYCKCEMPYNPDDLMVQCERCSDWFHPACIEMSAEKAKKLD 180
           F RF+YNS TGAF PDRV V+CKCEMPYNPDDLMVQCE CS+WFHP+CI  + E+AKK D
Sbjct: 121 FCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEWFHPSCIGTTIEEAKKPD 180

Query: 181 HFFCESCSPEGQKKLQNSQSTSKIAETKVDSKR 214
           +F+CE CSP+ Q+ L NS STS   + KV+ KR
Sbjct: 181 NFYCEECSPQ-QQNLHNSNSTSNNRDAKVNGKR 212

[Close]

BLAST of CmaCh11G010910 vs. TAIR 10
Match: AT4G22140.1 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 314.3 bits (804), Expect = 7.6e-86
Identity = 147/209 (70.33%), Postives = 172/209 (82.30%), Query Frame = 0


Query: 2   AKPKALRQTLDSYTVKRINKTIKAGDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVHV 61
           +K K  R+ LDSYT+K  NK ++AGDCVLMRPS+  KP YVA++EKIEAD+R  NVKVH 
Sbjct: 10  SKIKTGRKELDSYTIKGTNKVVRAGDCVLMRPSDAGKPPYVARVEKIEADARN-NVKVHC 69

Query: 62  RWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKNYTKLDAVGNEDYF 121
           RWYYRPEES+GGRRQFHG+KELFLSDH+DVQSA TIEGKC VHTFKNYT+L+ VG EDY+
Sbjct: 70  RWYYRPEESLGGRRQFHGAKELFLSDHFDVQSAHTIEGKCIVHTFKNYTRLENVGAEDYY 129

Query: 122 SRFDYNSATGAFTPDRVAVYCKCEMPYNPDDLMVQCERCSDWFHPACIEMSAEKAKKLDH 181
            RF+Y +ATGAFTPDRVAVYCKCEMPYNPDDLMVQCE C DW+HPAC+ M+ E+AKKLDH
Sbjct: 130 CRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDH 189

Query: 182 FFCESCSPEGQ-KKLQNSQSTSKIAETKV 210
           F C  CS +   KK QN  ++S   + KV
Sbjct: 190 FVCAECSSDDDVKKSQNGFTSSPADDVKV 217

[Close]

BLAST of CmaCh11G010910 vs. TAIR 10
Match: AT4G39100.2 (PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 266.9 bits (681), Expect = 1.4e-71
Identity = 120/163 (73.62%), Postives = 140/163 (85.89%), Query Frame = 0


Query: 1   MAKPKALRQTLDSYTVKRINKTIKAGDCVLMRPSEPSKPSYVAKIEKIEADSRGANVKVH 60
           M K KA R+ L SY +K INK+I+ GD VLMR SEP KPSYVA++E IE D+RG++ KV 
Sbjct: 1   MPKQKAPRKQLKSYKLKHINKSIQEGDAVLMRSSEPGKPSYVARVEAIETDARGSHAKVR 60

Query: 61  VRWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTIEGKCTVHTFKNYTKLDAVGNEDY 120
           VRWYYRPEESIGGRRQFHG+KE+FLSDH+D QSADTIEGKC VH+F +YTKLD+VGN+D+
Sbjct: 61  VRWYYRPEESIGGRRQFHGAKEVFLSDHFDFQSADTIEGKCKVHSFSSYTKLDSVGNDDF 120

Query: 121 FSRFDYNSATGAFTPDRVAVYCKCEMPYNPDDLMVQCERCSDW 164
           F RF+YNS TGAF PDRV V+CKCEMPYNPDDLMVQCE CS+W
Sbjct: 121 FCRFEYNSTTGAFDPDRVTVFCKCEMPYNPDDLMVQCEECSEW 163

[Close]

BLAST of CmaCh11G010910 vs. TAIR 10
Match: AT4G04260.1 (Bromo-adjacent homology (BAH) domain-containing protein )

HSP 1 Score: 224.9 bits (572), Expect = 6.0e-59
Identity = 114/185 (61.62%), Postives = 139/185 (75.14%), Query Frame = 0


Query: 31  MRPSEPSKPSYVAKIEKIEADSRGANVKVHVRWYYRPEESIGGRRQFHGSKELFLSDHYD 90
           MRPS+  K  YVA++EKIEAD+R  NVKVH RWYY PEES GGRRQ HG+KELFLSDH+D
Sbjct: 1   MRPSDAGKAPYVARVEKIEADARN-NVKVHCRWYYCPEESHGGRRQLHGAKELFLSDHFD 60

Query: 91  VQSADTIEGKCTVHTFKNYTKLDAVGNEDYFSRFDYNSATGAFTPDRVAVYCKCEMPYNP 150
           VQSA TIEGKC VHTFKNYT+L+ VG EDY+  FDY +ATGAFTPDRVAVY KCEMPYN 
Sbjct: 61  VQSAHTIEGKCIVHTFKNYTRLENVGVEDYYCIFDYKAATGAFTPDRVAVYYKCEMPYNS 120

Query: 151 DDLMVQCERCSDWFHPACIEMSAEKAKKLDHFFCESCS--PEGQKKLQNSQSTSKIAETK 210
           D+LM +   C    H AC+ ++ E+AKKL+HF C  CS   +G K+ QN  ++S   + K
Sbjct: 121 DELM-ELLLCHYRVHLACVGVTIEEAKKLEHFVCVECSSDEDGVKRFQNGFASSTTNDLK 180

Query: 211 VDSKR 214
             +++
Sbjct: 181 PSAEK 183

The following BLAST results are available for this feature:

BLAST of CmaCh11G010910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FEN9	2.1e-85	69.01	Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=...	[more]
F4JL28	1.1e-84	70.33	Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=...	[more]
F4JGB7	2.8e-61	62.63	Chromatin remodeling protein At4g04260 OS=Arabidopsis thaliana OX=3702 GN=At4g04...	[more]
Q9P281	5.1e-10	32.84	BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens OX=9606 GN=BAHCC...	[more]
Q3UHR0	1.1e-09	33.58	BAH and coiled-coil domain-containing protein 1 OS=Mus musculus OX=10090 GN=Bahc...	[more]

BLAST of CmaCh11G010910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G22140.2	8.1e-88	69.91	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]
AT4G39100.1	1.5e-86	69.01	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]
AT4G22140.1	7.6e-86	70.33	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]
AT4G39100.2	1.4e-71	73.62	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing prot...	[more]
AT4G04260.1	6.0e-59	61.62	Bromo-adjacent homology (BAH) domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001025	Bromo adjacent homology (BAH) domain	SMART	SM00439	BAH_4	coord: 21..137 e-value: 2.2E-40 score: 150.1
IPR001025	Bromo adjacent homology (BAH) domain	PFAM	PF01426	BAH	coord: 22..136 e-value: 3.5E-20 score: 72.1
IPR001025	Bromo adjacent homology (BAH) domain	PROSITE	PS51038	BAH	coord: 21..137 score: 22.598875
IPR001965	Zinc finger, PHD-type	SMART	SM00249	PHD_3	coord: 141..188 e-value: 1.3E-8 score: 44.7
IPR043151	Bromo adjacent homology (BAH) domain superfamily	GENE3D	2.30.30.490		coord: 2..133 e-value: 5.7E-31 score: 109.5
IPR019787	Zinc finger, PHD-finger	PFAM	PF00628	PHD	coord: 141..189 e-value: 5.0E-10 score: 39.1
IPR019787	Zinc finger, PHD-finger	PROSITE	PS50016	ZF_PHD_2	coord: 139..190 score: 9.196301
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 134..205 e-value: 1.1E-20 score: 74.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..216
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..205
None	No IPR available	PANTHER	PTHR46364	OS08G0421900 PROTEIN	coord: 1..216
None	No IPR available	PANTHER	PTHR46364:SF7	CHROMATIN REMODELING PROTEIN SHL	coord: 1..216
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 142..187
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 132..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G010910.1	CmaCh11G010910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
biological_process	GO:0035067	negative regulation of histone acetylation
biological_process	GO:2000028	regulation of photoperiodism, flowering
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0035064	methylated histone binding
molecular_function	GO:0000976	transcription cis-regulatory region binding