CmaCh11G009900 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G009900
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor UNE12-like
Location	Cma_Chr11: 5277672 .. 5283100 (+)
RNA-Seq Expression	CmaCh11G009900
Synteny	CmaCh11G009900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGAAATAAAAAAATAAAAAAATAAAAAAATAAAATGTAAGTGCCTTTGTACTGTGCTTTTGTTTAATTTCCAAACACCCTTTTCTTCACAAAGCCATATAATAAAGTCAGTAAACCAAAAAGCTGAGAGAAAGAAAGAGAGAGAACCAAAAAGAGGGCTTAATTTCATTTCATTACCCTCAAAATCGCTTCCCTTCCGCCTTATCGGCTTTCGGATCTGCCACCCATTTCTCCGACACCCTCCCCCTTCTTTTGGGCTTCCCCAGAAACCACCGCCACCACCGCCTCCCCTCCATTTACTTCTCTGTTCTCTGTTTCCATTTTGGGGATACTCATTTATGGCCGGAATCCCCTCTGAGGGGTTGGGAGATGACTTCTTCGAGCAGATTCTCGCAGTGCAGCCGGGTTACGCCGCCGGAGCAACCGGCGATGTCGTCTCTATTCCGATGGGCTTGCAACTTGGGTCTGGCGGCGGCGGAGGCGGCGATGGGTTGAGAGGGATAGCGGGGCTGCAAGGAGGCGGTGGAGGAGGAGGGATGGGTATGCCGTTGGGGCTGAATTTAGAACAAGGGTTTTTGAGGCAAGAGAGGTTTAGAGATGAACTTAATAACAACAATAATAATAGTAATAATACCACTAATAATGCTTCATCTTCTTCCACTGCTTCTTCAGGAATCACTGTAAATCTCTCTTTCCCTCTCTTAATTTCTTCATTTGTTCTTCATGTTCTTCAGTGGGGAGGGACGGGATTTTGGGTGTTCTTATATGCTCTGTTTGGATCATCTGAATGATTTCAACCCAGATTAGAACACGCTAAATTTTCCCATTTTGGGTAACTTTGATCTTCTTTTTACTCATTTTTGTTTGGTTTTTTGTGTTTATTATTATTTTTTTCTTGTCAAATCTCTGATTTTAGAATAAACTTTTGTTTTTAAAAAAAAAAAAAAAAAAATTGAAGAAATTGAAAATTGTTTGTTCTTCTCCAGAGTTAGGAGCAGTCTACTTCAGCTACAGAAATTTTATTCCCACTCTCATATATATATATATATATATATATATATATTTTAATTATTAGGATTCTTAAGGGTGTTTTCGTCATTTCACTCTTGTTTTTCAGGAGAGAGATTCTTCGGTTCAGCACATGAACGCCTTGTTTCCTTCCTTTGGACATTTGCAGCAGACTCAACAACTCCGGCCACCTCCGCCGCCGTTACATCTTCACCAGGTGAATTTACATTTTTCTCCCTACATCCCCCCCCTTTTTTTTTTTTTTCTTTTTCTCTACAAATTTAAAATTCCAAATTACTTAATGTTTATTTATTCTAATATGCATTTGGGTTTATCATAATTATTAATTAAAAGCGTTCATAAATTAATCCTCGTTATAACCTATGCTTTTTTAGCACATTTAATCATAGTGACATTAAATCATTTAATTAACCCACCTGTCTTTTAATTTCAGCAAAAATAAATAAATAAAGCACACAAGACAATTATGTTATTGTTAATAAAAGGGTTTTTTTAATTTTTTTAATTTTTTTAATTTTTTTTAAAATATCACATGTGATGCCCGATACTAAATTTCAAACCAAGTACAAAAAAACGCGTTTTCTGAATTAATTAATTAATTAATTAATTTTTTTTTTTAAATTTCCTTTTATTATTATTATTCTTGAACCCAGTTCTTGTGTTATCTTCGTTTCCAAACAGACCGTAATCTTCAATTTTTACTTTGGGGTGTGTATTACACGCGTCTGATTCTGATTGGTGTTTGCCCTTTATCAATTATTGATTGACGGTAAAAGACAAACAAACCATCTCTACCACGTGTGTAAATTCTTCGTACGTGTAAGTAATCTTTGCCGTTGGATTCTGGAAGCCTAAGCATGATCATTCGCTTACGTCATTACTTAAGGAGCGTCTGAAACACGCTCCTTTTATTTTTTCAAAGATGTCAGAGTCCATCCACGTGGTTGTATTTTATTGGCGGAAACCAAGAACCCATGTTTTATTCTTTTAAATTAATTTTTTATATGCTAGTGCTTTTTTCTTTTATTTTTTTTTAATTTTTTTTAACTTATGTTAATTTTTAATTAAAATAATATAAATAAAATGTCTGTTACCCACAAAAAATTTATTCTTTGTTCTAAAAATATGAATGTGGTCAGTAGGACAATAATGTAATTTCCTTCAGTTTTTATTTATTTATTCATAATATTTTAATTTGTGCTCCATTATTATGTGTTGGTCTTTGGAACCTTGTAGCCATCTTTAGCCAGATGCCAATTTATATATAAAGAAATGAATTAAAATTTTATCTTTTTATTGCTTACAAAGAGAAAATGACAATTGAGAAATTCCCATTTTAATGGCTAATTTATTCATTATACTCTTTCTTCCATGGAAATAAGACTAAAGGAAAGCATACAAATACTTTGACATATGATGATGTATCTTCTTTGGATTCATGTGCAGCCCTTTCACAATCAGACAAATCCCGGGATGGTTGCTGCTGTACCGCAACCTTCTCAAATCCGTCCAAGAGTTCGAGCACGACGTGGGCAAGCGACTGATCCTCATAGTATTGCCGAAAGGGTAATCTCTTCTTTCGATTTTTAAGAATGTCGATAGAAATGTACGGTAGTCCTCTTGTTTACTACTAGTTGACTAGGAAATGTCTTTGTTGTGTTACACAATAGAAATGAGAAATGGGAAACGAGAAACAATACATATTGACAGAGCGGTTTTTTTATCTTAGTATGTCGCTTGTTTGTTGTGAGATCCCATGTTGGTTGGAGAGGAGTACAAACTATTCCTTCTAAGGGTGTGGAAACCTCTCCCTAGTAGATGAGTTTTAAAACCGTGAGGCTGATGACGATACGTAACGGGTCAAAGTAGACAATATATGTTAGTGGTGGGTTTGTGCTGTTACAAATGGTATCAGAGCCAGATACTGGGCAGTGTGTCAGTGAGGATGCTGGGCTCTCAAAAGAGGTGGATTATGAGATCCCACATCAGCTGAAGAGGGGAACGGAGCATTCTTTATAAGGGTGTGGAAACCTCTTCCTAGTAGACGCGTTTTAAAACCGTGAGGCTGATGGTGATACGTAACAAGCCAAAGCAAACAATATCTGTTAGCGGTGGGCTTGAGTTGTTACAAATTTTATCAGAGCCAGATACCGGGCCGATGTGCCAGCGAGGACACTAGGTCCCAAGGAGGGTGGATTGTGAGATCCCACATCAGTTGGAGAGAGGAACGAAACATTTCTTATAAGAATGTAGAAACCTTTCCTTAGTAGACGCGTTTTAAAACCGTGAGGCTGACGACGATATGTAACGGACTAAAGTGGACAATATGGGAGCACATGTTACAGATATTTGAATGTGAAGTCCATAAAGAGGGAGCTTTTAGCACTTGTGCTTATTTAGGAGTTCATATAAGGAAAACCCATCATTTTAAGAGCTTTGGGAAGCCCTTAGAAAGGTTATAGATGCTAGATGGCCAAAAGAAGTGACATTCTTGACCACTTTAGAGATCACAAGGGAGGGGGTCAACCAAAAGGGTGCCCCAATGTGCCCTCCAATTCGATAACATGGCAATCTTACTCGGTCACCATCCTTGCACCTATACAGAGCTTTATCCGATCGAAACCAACCGATCGAGCTGAGGTCGGTGTCCTTTAAATCAAGAGGTTTAAGGGCATCGAACCAGTCATTAGGGAATAACTAGTATTAGTGAAGGAAGGAGCGGGATAGATTATCAATGTATAAAGTTAGAACGTAAAATTTTAGGTGTCCCAATAAATATTTCGTGCTTCGCCCTCCTAGATAAGACAAGGGGATGAGAGGGGGGTAGCGGAGACGCCTTCATAAAGAATTTTCAAAGAAAGCTTCCTAAACGAACTCTAAAGGGCTTTCTTTTTTTTTCACTTTTTGTGTTATCTATATCTCAATGAATCTTAGCTCGGTTCGACTGTCATGACTGCAGTTGCGTCGAGAAAGAATCGCAGAAAGAATGAAGGCCTTGCAGGAGTTGGTTCCTAGCTGCAATAAGGTTCGGTTCCACTCAAAAACCTGAATTTTATTAATGACTCTGATTGCTCGAACACAAATTCATAGTCTCGACATTAACCAATTCGTTTCGTTTTGCAGACTGATCGAGCGGCAATGCTCGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTACTCATTTTCAAACTATTTTTCAGAACAATGAAAGTTCATGACCTCGTCGTTTACAAGTCACTCGATCCCAATTCTTAGGAACAATACGACAGTTCTTGAAAAAAGTCTACCAAGCATGACCCCGATTTTTATATTGGTTGATTTGTTTCCTAGACGTCTCGTATCTGATTTTATTCGATATACTTTCCATAGGTTTTAAGCATGAGCAGACTAGGTGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCCTATCATCAGTCGAGGTACGAAAATTTGAGCTTCGACGTTCTTTATAGAAATGACCCTCTTCTCCCGGGCTTAAAGATTAGCCCGAGATCGATTAAGGAACCTATAGAAATGACCCTTTATTTTCTTATTGCGTTAAACGACCATTAACTCAAAAGCTTAAACTGATAGGTTATATGGCTCTCTAATCTCTTGGGGATTAGTCCCAAACCGAAAAACGTTGCTACTAAAATGACACTACAGGAGTTCAAACACAAAACCTCGTATTTTGTCATCATGTCAAACTTGTAGTAAATTCAAAAGTTTAAGTCGACATGTCAGCATATGTTCGACATTTCTTGTCGTTTTGTTTACGATTCTCAACCGGGATTTTACGTATTTATAGGGAGAAGGCATTGAGAGCGGCGCGAATCAACAAGCATGGGAGAAATGGTCAAGTGATGGCACAGAGCAACAAGTAGCAAAACTAATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATCATGCCCATCTCATTAGCCTCAGCCATTTTCAGGACACACCAAGCCGATCCGCCGATCATGGTTAAGCCAGAAATGAACACTCCTTAGACCGACCGACCTTATGTGCCCATCTTGGACTCCCACCGTGCTAAGTTGGTTAAATCCATCCCGTCTATCGTTTCGTGATTATGGATATCATCAGCTTAATATATAATCTAGTGTTTTTTTTGTAACTCCTTATTGAAGTGAAGTGGTGGAAAATGACCAAAATATTTTGTGATGGAAAATCTACAACTTTTGTTTCTTGTTTTTTTTTTTATTTTGTTTAGTTGAGAATGAATAAAAAGTACGATAATAGTATGTGTTGGATGATGAAAGTCCCACATTGGCTAATTTAGAGAATGTTCATGGGTTTATAATCAAAGAATACTCTCTCTATTGGTTTGAGA

mRNA sequence

AGAGAAATAAAAAAATAAAAAAATAAAAAAATAAAATGTAAGTGCCTTTGTACTGTGCTTTTGTTTAATTTCCAAACACCCTTTTCTTCACAAAGCCATATAATAAAGTCAGTAAACCAAAAAGCTGAGAGAAAGAAAGAGAGAGAACCAAAAAGAGGGCTTAATTTCATTTCATTACCCTCAAAATCGCTTCCCTTCCGCCTTATCGGCTTTCGGATCTGCCACCCATTTCTCCGACACCCTCCCCCTTCTTTTGGGCTTCCCCAGAAACCACCGCCACCACCGCCTCCCCTCCATTTACTTCTCTGTTCTCTGTTTCCATTTTGGGGATACTCATTTATGGCCGGAATCCCCTCTGAGGGGTTGGGAGATGACTTCTTCGAGCAGATTCTCGCAGTGCAGCCGGGTTACGCCGCCGGAGCAACCGGCGATGTCGTCTCTATTCCGATGGGCTTGCAACTTGGGTCTGGCGGCGGCGGAGGCGGCGATGGGTTGAGAGGGATAGCGGGGCTGCAAGGAGGCGGTGGAGGAGGAGGGATGGGTATGCCGTTGGGGCTGAATTTAGAACAAGGGTTTTTGAGGCAAGAGAGGTTTAGAGATGAACTTAATAACAACAATAATAATAGTAATAATACCACTAATAATGCTTCATCTTCTTCCACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGGTTCAGCACATGAACGCCTTGTTTCCTTCCTTTGGACATTTGCAGCAGACTCAACAACTCCGGCCACCTCCGCCGCCGTTACATCTTCACCAGCCCTTTCACAATCAGACAAATCCCGGGATGGTTGCTGCTGTACCGCAACCTTCTCAAATCCGTCCAAGAGTTCGAGCACGACGTGGGCAAGCGACTGATCCTCATAGTATTGCCGAAAGGTTGCGTCGAGAAAGAATCGCAGAAAGAATGAAGGCCTTGCAGGAGTTGGTTCCTAGCTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGCAGACTAGGTGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCCTATCATCAGTCGAGGGAGAAGGCATTGAGAGCGGCGCGAATCAACAAGCATGGGAGAAATGGTCAAGTGATGGCACAGAGCAACAAGTAGCAAAACTAATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATCATGCCCATCTCATTAGCCTCAGCCATTTTCAGGACACACCAAGCCGATCCGCCGATCATGGTTAAGCCAGAAATGAACACTCCTTAGACCGACCGACCTTATGTGCCCATCTTGGACTCCCACCGTGCTAAGTTGGTTAAATCCATCCCGTCTATCGTTTCGTGATTATGGATATCATCAGCTTAATATATAATCTAGTGTTTTTTTTGTAACTCCTTATTGAAGTGAAGTGGTGGAAAATGACCAAAATATTTTGTGATGGAAAATCTACAACTTTTGTTTCTTGTTTTTTTTTTTATTTTGTTTAGTTGAGAATGAATAAAAAGTACGATAATAGTATGTGTTGGATGATGAAAGTCCCACATTGGCTAATTTAGAGAATGTTCATGGGTTTATAATCAAAGAATACTCTCTCTATTGGTTTGAGA

Coding sequence (CDS)

ATGGCCGGAATCCCCTCTGAGGGGTTGGGAGATGACTTCTTCGAGCAGATTCTCGCAGTGCAGCCGGGTTACGCCGCCGGAGCAACCGGCGATGTCGTCTCTATTCCGATGGGCTTGCAACTTGGGTCTGGCGGCGGCGGAGGCGGCGATGGGTTGAGAGGGATAGCGGGGCTGCAAGGAGGCGGTGGAGGAGGAGGGATGGGTATGCCGTTGGGGCTGAATTTAGAACAAGGGTTTTTGAGGCAAGAGAGGTTTAGAGATGAACTTAATAACAACAATAATAATAGTAATAATACCACTAATAATGCTTCATCTTCTTCCACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCGGTTCAGCACATGAACGCCTTGTTTCCTTCCTTTGGACATTTGCAGCAGACTCAACAACTCCGGCCACCTCCGCCGCCGTTACATCTTCACCAGCCCTTTCACAATCAGACAAATCCCGGGATGGTTGCTGCTGTACCGCAACCTTCTCAAATCCGTCCAAGAGTTCGAGCACGACGTGGGCAAGCGACTGATCCTCATAGTATTGCCGAAAGGTTGCGTCGAGAAAGAATCGCAGAAAGAATGAAGGCCTTGCAGGAGTTGGTTCCTAGCTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGCAGACTAGGTGGGGCAGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCCCTATCATCAGTCGAGGGAGAAGGCATTGAGAGCGGCGCGAATCAACAAGCATGGGAGAAATGGTCAAGTGATGGCACAGAGCAACAAGTAGCAAAACTAATGGAAGAAGATGTGGGAGCTGCCATGCAATTCCTACAATCTAAAGCTCTATGCATCATGCCCATCTCATTAGCCTCAGCCATTTTCAGGACACACCAAGCCGATCCGCCGATCATGGTTAAGCCAGAAATGAACACTCCTTAG

Protein sequence

MAGIPSEGLGDDFFEQILAVQPGYAAGATGDVVSIPMGLQLGSGGGGGGDGLRGIAGLQGGGGGGGMGMPLGLNLEQGFLRQERFRDELNNNNNNSNNTTNNASSSSTASSGITERDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQPFHNQTNPGMVAAVPQPSQIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGANQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPPIMVKPEMNTP

Homology

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BLAST of CmaCh11G009900 vs. ExPASy Swiss-Prot
Match: O22768 (Transcription factor UNE12 OS=Arabidopsis thaliana OX=3702 GN=UNE12 PE=1 SV=2)

HSP 1 Score: 242.3 bits (617), Expect = 8.0e-63
Identity = 185/342 (54.09%), Postives = 211/342 (61.70%), Query Frame = 0


Query: 11  DDFFEQILAVQPGYAAGATGDVVSI---------PMGLQLGSGGGGGGDGLRGIAGLQGG 70
           DDFFEQIL + P ++A +   +  +         PM LQLGSG  G   G     GL G 
Sbjct: 17  DDFFEQILGL-PNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEGSHMG-----GLGGS 76

Query: 71  GGGG--GMGMPLGLNLEQ----GFLRQERFRDELNNNNNNSNNTTNNASSSSTASSGITE 130
           G  G      PLGL+L+Q    GFLR E                  + S    +   +  
Sbjct: 77  GPTGFHNQMFPLGLSLDQGKGPGFLRPE----------------GGHGSGKRFSDDVVDN 136

Query: 131 RDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQPFHNQTNPGMVAAVPQPSQIRPRVR 190
           R SS++      P F H Q  QQ  PPP   H                  QP+ IRPRVR
Sbjct: 137 RCSSMK------PVF-HGQPMQQ--PPPSAPH------------------QPTSIRPRVR 196

Query: 191 ARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKV 250
           ARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTDRAAM+DEIVDYVKFLRLQVKV
Sbjct: 197 ARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKV 256

Query: 251 LSMSRLGGAGAVAQLVADVPL-SSVEGEGIESGAN-QQAWEKWSSDGTEQQVAKLMEEDV 310
           LSMSRLGGAGAVA LV D+PL SSVE E  E G   Q AWEKWS+DGTE+QVAKLMEE+V
Sbjct: 257 LSMSRLGGAGAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSNDGTERQVAKLMEENV 309

Query: 311 GAAMQFLQSKALCIMPISLASAIFRTHQADPPIMVKPEMNTP 336
           GAAMQ LQSKALC+MPISLA AI+ +   D   +VKPE N P
Sbjct: 317 GAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSVVKPENNPP 309

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BLAST of CmaCh11G009900 vs. ExPASy Swiss-Prot
Match: Q93Y00 (Transcription factor bHLH7 OS=Arabidopsis thaliana OX=3702 GN=BHLH7 PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.2e-61
Identity = 180/345 (52.17%), Postives = 207/345 (60.00%), Query Frame = 0


Query: 11  DDFFEQILAV-----QPGYAAGATGDVVSIPMGLQLGSGGGGGGDGLRGIAGLQGGGGGG 70
           DDFFEQIL +       G      G V   PM LQLGSG  G  + +  I      GGGG
Sbjct: 19  DDFFEQILGLSNFSGSSGSGLSGIGGVGPPPMMLQLGSGNEGNHNHMGAI------GGGG 78

Query: 71  GMG-----MPLGLNLEQ----GFLRQE----RFRDELNNNNNNSNNTTNNASSSSTASSG 130
            +G      PLGL+L+Q    GFL+ +    RF+D++ +N  +S                
Sbjct: 79  PVGFHNQMFPLGLSLDQGKGHGFLKPDETGKRFQDDVLDNRCSS---------------- 138

Query: 131 ITERDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQPFHNQTNPGMVAAVPQPSQIRP 190
                     M  +F    H Q   Q  PP P                     Q S IRP
Sbjct: 139 ----------MKPIF----HGQPMSQPAPPMP--------------------HQQSTIRP 198

Query: 191 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQ 250
           RVRARRGQATDPHSIAERLRRERIAER+++LQELVP+ NKTDRAAM+DEIVDYVKFLRLQ
Sbjct: 199 RVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLRLQ 258

Query: 251 VKVLSMSRLGGAGAVAQLVADVPL-SSVEGEGIESGANQQAWEKWSSDGTEQQVAKLMEE 310
           VKVLSMSRLGGAGAVA LV ++PL SSVE E       Q  WEKWS+DGTE+QVAKLMEE
Sbjct: 259 VKVLSMSRLGGAGAVAPLVTEMPLSSSVEDE------TQAVWEKWSNDGTERQVAKLMEE 301

Query: 311 DVGAAMQFLQSKALCIMPISLASAIFRTHQAD-PPIMVKPEMNTP 336
           +VGAAMQ LQSKALCIMPISLA AI+ +   D    +VKPEMN P
Sbjct: 319 NVGAAMQLLQSKALCIMPISLAMAIYHSQPPDTSSSIVKPEMNPP 301

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BLAST of CmaCh11G009900 vs. ExPASy Swiss-Prot
Match: D0PX88 (bHLH transcription factor RHL1 OS=Lotus japonicus OX=34305 GN=RHL1 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.9e-44
Identity = 123/223 (55.16%), Postives = 143/223 (64.13%), Query Frame = 0


Query: 115 ERDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQ------PFHNQTNP--GMVAAVPQ 174
           E  +SVQ +   F    +  Q QQ    PP  + +Q         NQ  P  G       
Sbjct: 107 EASASVQALYNGFTGSLNGTQPQQHFQHPPQGNSNQIQGQNFGATNQAPPASGSAGGGGN 166

Query: 175 PSQIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYV 234
             Q +PRVRARRGQATDPHSIAERLRRERIAERMKALQELVP+ NKTD+A+MLDEI+DYV
Sbjct: 167 QGQAKPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYV 226

Query: 235 KFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEG----IESGA---------NQQAW 294
           KFL+LQVKVLSMSRLGGA AVA LVAD+      G G    + +GA            + 
Sbjct: 227 KFLQLQVKVLSMSRLGGAAAVAPLVADISSEGGGGGGGGDCVTNGAGGVLPRSTTTAAST 286

Query: 295 EKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAI 317
              S   TE QVAKLMEED+G+AMQ+LQ K LC+MPISLA+AI
Sbjct: 287 TNDSLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 329

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BLAST of CmaCh11G009900 vs. ExPASy Swiss-Prot
Match: Q9ZUG9 (Transcription factor LRL1 OS=Arabidopsis thaliana OX=3702 GN=LRL1 PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 6.4e-44
Identity = 105/159 (66.04%), Postives = 123/159 (77.36%), Query Frame = 0


Query: 159 GMVAAVPQPSQIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAM 218
           G VAA   P Q R ++RARRGQATDPHSIAERLRRERIAERMKALQELVP+ NKTD+A+M
Sbjct: 126 GTVAA---PPQSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASM 185

Query: 219 LDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGANQQAWEKWSS 278
           LDEI+DYVKFL+LQVKVLSMSRLGGA +V+  +++   S         G +Q A     S
Sbjct: 186 LDEIIDYVKFLQLQVKVLSMSRLGGAASVSSQISEAGGSHGNASSAMVGGSQTAGNSNDS 245

Query: 279 -DGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAI 317
              TE QVAKLMEED+G+AMQ+LQ K LC+MPISLA+AI
Sbjct: 246 VTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 281

[Close]

BLAST of CmaCh11G009900 vs. ExPASy Swiss-Prot
Match: Q9LSQ3 (Transcription factor LRL3 OS=Arabidopsis thaliana OX=3702 GN=LRL3 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.6e-42
Identity = 99/159 (62.26%), Postives = 122/159 (76.73%), Query Frame = 0


Query: 171 RPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLR 230
           +PRVRARRGQATDPHSIAERLRRERIAERMK+LQELVP+ NKTD+A+MLDEI++YV+FL+
Sbjct: 96  KPRVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQ 155

Query: 231 LQVKVLSMSRLGGAGAVAQLV-------------ADVPLSSVEGEGIESGANQQAWEKWS 290
           LQVKVLSMSRLGGAG+V   +                P + + G G  +G++ +     S
Sbjct: 156 LQVKVLSMSRLGGAGSVGPRLNGLSAEAGGRLNALTAPCNGLNGNGNATGSSNE-----S 215

Query: 291 SDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAI 317
              TEQ+VAKLMEED+G+AMQ+LQ K LC+MPISLA+AI
Sbjct: 216 LRSTEQRVAKLMEEDMGSAMQYLQGKGLCLMPISLATAI 249

[Close]

BLAST of CmaCh11G009900 vs. TAIR 10
Match: AT4G02590.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 242.3 bits (617), Expect = 5.7e-64
Identity = 185/342 (54.09%), Postives = 211/342 (61.70%), Query Frame = 0


Query: 11  DDFFEQILAVQPGYAAGATGDVVSI---------PMGLQLGSGGGGGGDGLRGIAGLQGG 70
           DDFFEQIL + P ++A +   +  +         PM LQLGSG  G   G     GL G 
Sbjct: 17  DDFFEQILGL-PNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEGSHMG-----GLGGS 76

Query: 71  GGGG--GMGMPLGLNLEQ----GFLRQERFRDELNNNNNNSNNTTNNASSSSTASSGITE 130
           G  G      PLGL+L+Q    GFLR E                  + S    +   +  
Sbjct: 77  GPTGFHNQMFPLGLSLDQGKGPGFLRPE----------------GGHGSGKRFSDDVVDN 136

Query: 131 RDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQPFHNQTNPGMVAAVPQPSQIRPRVR 190
           R SS++      P F H Q  QQ  PPP   H                  QP+ IRPRVR
Sbjct: 137 RCSSMK------PVF-HGQPMQQ--PPPSAPH------------------QPTSIRPRVR 196

Query: 191 ARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKV 250
           ARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTDRAAM+DEIVDYVKFLRLQVKV
Sbjct: 197 ARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKV 256

Query: 251 LSMSRLGGAGAVAQLVADVPL-SSVEGEGIESGAN-QQAWEKWSSDGTEQQVAKLMEEDV 310
           LSMSRLGGAGAVA LV D+PL SSVE E  E G   Q AWEKWS+DGTE+QVAKLMEE+V
Sbjct: 257 LSMSRLGGAGAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSNDGTERQVAKLMEENV 309

Query: 311 GAAMQFLQSKALCIMPISLASAIFRTHQADPPIMVKPEMNTP 336
           GAAMQ LQSKALC+MPISLA AI+ +   D   +VKPE N P
Sbjct: 317 GAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSVVKPENNPP 309

[Close]

BLAST of CmaCh11G009900 vs. TAIR 10
Match: AT4G02590.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 242.3 bits (617), Expect = 5.7e-64
Identity = 185/342 (54.09%), Postives = 211/342 (61.70%), Query Frame = 0


Query: 11  DDFFEQILAVQPGYAAGATGDVVSI---------PMGLQLGSGGGGGGDGLRGIAGLQGG 70
           DDFFEQIL + P ++A +   +  +         PM LQLGSG  G   G     GL G 
Sbjct: 17  DDFFEQILGL-PNFSASSAAGLSGVDGGLGGGAPPMMLQLGSGEEGSHMG-----GLGGS 76

Query: 71  GGGG--GMGMPLGLNLEQ----GFLRQERFRDELNNNNNNSNNTTNNASSSSTASSGITE 130
           G  G      PLGL+L+Q    GFLR E                  + S    +   +  
Sbjct: 77  GPTGFHNQMFPLGLSLDQGKGPGFLRPE----------------GGHGSGKRFSDDVVDN 136

Query: 131 RDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQPFHNQTNPGMVAAVPQPSQIRPRVR 190
           R SS++      P F H Q  QQ  PPP   H                  QP+ IRPRVR
Sbjct: 137 RCSSMK------PVF-HGQPMQQ--PPPSAPH------------------QPTSIRPRVR 196

Query: 191 ARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKV 250
           ARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTDRAAM+DEIVDYVKFLRLQVKV
Sbjct: 197 ARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKV 256

Query: 251 LSMSRLGGAGAVAQLVADVPL-SSVEGEGIESGAN-QQAWEKWSSDGTEQQVAKLMEEDV 310
           LSMSRLGGAGAVA LV D+PL SSVE E  E G   Q AWEKWS+DGTE+QVAKLMEE+V
Sbjct: 257 LSMSRLGGAGAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSNDGTERQVAKLMEENV 309

Query: 311 GAAMQFLQSKALCIMPISLASAIFRTHQADPPIMVKPEMNTP 336
           GAAMQ LQSKALC+MPISLA AI+ +   D   +VKPE N P
Sbjct: 317 GAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSVVKPENNPP 309

[Close]

BLAST of CmaCh11G009900 vs. TAIR 10
Match: AT1G03040.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 238.4 bits (607), Expect = 8.2e-63
Identity = 180/345 (52.17%), Postives = 207/345 (60.00%), Query Frame = 0


Query: 11  DDFFEQILAV-----QPGYAAGATGDVVSIPMGLQLGSGGGGGGDGLRGIAGLQGGGGGG 70
           DDFFEQIL +       G      G V   PM LQLGSG  G  + +  I      GGGG
Sbjct: 19  DDFFEQILGLSNFSGSSGSGLSGIGGVGPPPMMLQLGSGNEGNHNHMGAI------GGGG 78

Query: 71  GMG-----MPLGLNLEQ----GFLRQE----RFRDELNNNNNNSNNTTNNASSSSTASSG 130
            +G      PLGL+L+Q    GFL+ +    RF+D++ +N  +S                
Sbjct: 79  PVGFHNQMFPLGLSLDQGKGHGFLKPDETGKRFQDDVLDNRCSS---------------- 138

Query: 131 ITERDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQPFHNQTNPGMVAAVPQPSQIRP 190
                     M  +F    H Q   Q  PP P                     Q S IRP
Sbjct: 139 ----------MKPIF----HGQPMSQPAPPMP--------------------HQQSTIRP 198

Query: 191 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQ 250
           RVRARRGQATDPHSIAERLRRERIAER+++LQELVP+ NKTDRAAM+DEIVDYVKFLRLQ
Sbjct: 199 RVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLRLQ 258

Query: 251 VKVLSMSRLGGAGAVAQLVADVPL-SSVEGEGIESGANQQAWEKWSSDGTEQQVAKLMEE 310
           VKVLSMSRLGGAGAVA LV ++PL SSVE E       Q  WEKWS+DGTE+QVAKLMEE
Sbjct: 259 VKVLSMSRLGGAGAVAPLVTEMPLSSSVEDE------TQAVWEKWSNDGTERQVAKLMEE 301

Query: 311 DVGAAMQFLQSKALCIMPISLASAIFRTHQAD-PPIMVKPEMNTP 336
           +VGAAMQ LQSKALCIMPISLA AI+ +   D    +VKPEMN P
Sbjct: 319 NVGAAMQLLQSKALCIMPISLAMAIYHSQPPDTSSSIVKPEMNPP 301

[Close]

BLAST of CmaCh11G009900 vs. TAIR 10
Match: AT1G03040.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-61
Identity = 176/345 (51.01%), Postives = 204/345 (59.13%), Query Frame = 0


Query: 11  DDFFEQILAV-----QPGYAAGATGDVVSIPMGLQLGSGGGGGGDGLRGIAGLQGGGGGG 70
           DDFFEQIL +       G      G V   PM LQLGSG  G  + +  I      GGGG
Sbjct: 19  DDFFEQILGLSNFSGSSGSGLSGIGGVGPPPMMLQLGSGNEGNHNHMGAI------GGGG 78

Query: 71  GMG-----MPLGLNLEQ----GFLRQE----RFRDELNNNNNNSNNTTNNASSSSTASSG 130
            +G      PLGL+L+Q    GFL+ +    RF+D++ +N  +S                
Sbjct: 79  PVGFHNQMFPLGLSLDQGKGHGFLKPDETGKRFQDDVLDNRCSS---------------- 138

Query: 131 ITERDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQPFHNQTNPGMVAAVPQPSQIRP 190
                                 +    +P PP  H                  Q S IRP
Sbjct: 139 ---------------------MKPPMSQPAPPMPH------------------QQSTIRP 198

Query: 191 RVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQ 250
           RVRARRGQATDPHSIAERLRRERIAER+++LQELVP+ NKTDRAAM+DEIVDYVKFLRLQ
Sbjct: 199 RVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLRLQ 258

Query: 251 VKVLSMSRLGGAGAVAQLVADVPL-SSVEGEGIESGANQQAWEKWSSDGTEQQVAKLMEE 310
           VKVLSMSRLGGAGAVA LV ++PL SSVE E       Q  WEKWS+DGTE+QVAKLMEE
Sbjct: 259 VKVLSMSRLGGAGAVAPLVTEMPLSSSVEDE------TQAVWEKWSNDGTERQVAKLMEE 296

Query: 311 DVGAAMQFLQSKALCIMPISLASAIFRTHQAD-PPIMVKPEMNTP 336
           +VGAAMQ LQSKALCIMPISLA AI+ +   D    +VKPEMN P
Sbjct: 319 NVGAAMQLLQSKALCIMPISLAMAIYHSQPPDTSSSIVKPEMNPP 296

[Close]

BLAST of CmaCh11G009900 vs. TAIR 10
Match: AT4G02590.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 231.9 bits (590), Expect = 7.7e-61
Identity = 165/289 (57.09%), Postives = 186/289 (64.36%), Query Frame = 0


Query: 55  IAGLQGGGGGG--GMGMPLGLNLEQ----GFLRQERFRDELNNNNNNSNNTTNNASSSST 114
           + GL G G  G      PLGL+L+Q    GFLR E                  + S    
Sbjct: 1   MGGLGGSGPTGFHNQMFPLGLSLDQGKGPGFLRPE----------------GGHGSGKRF 60

Query: 115 ASSGITERDSSVQHMNALFPSFGHLQQTQQLRPPPPPLHLHQPFHNQTNPGMVAAVPQPS 174
           +   +  R SS++      P F H Q  QQ  PPP   H                  QP+
Sbjct: 61  SDDVVDNRCSSMK------PVF-HGQPMQQ--PPPSAPH------------------QPT 120

Query: 175 QIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKF 234
            IRPRVRARRGQATDPHSIAERLRRERIAER++ALQELVP+ NKTDRAAM+DEIVDYVKF
Sbjct: 121 SIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKF 180

Query: 235 LRLQVKVLSMSRLGGAGAVAQLVADVPL-SSVEGEGIESGAN-QQAWEKWSSDGTEQQVA 294
           LRLQVKVLSMSRLGGAGAVA LV D+PL SSVE E  E G   Q AWEKWS+DGTE+QVA
Sbjct: 181 LRLQVKVLSMSRLGGAGAVAPLVTDMPLSSSVEDETGEGGRTPQPAWEKWSNDGTERQVA 240

Query: 295 KLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPPIMVKPEMNTP 336
           KLMEE+VGAAMQ LQSKALC+MPISLA AI+ +   D   +VKPE N P
Sbjct: 241 KLMEENVGAAMQLLQSKALCMMPISLAMAIYHSQPPDTSSVVKPENNPP 246

The following BLAST results are available for this feature:

BLAST of CmaCh11G009900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22768	8.0e-63	54.09	Transcription factor UNE12 OS=Arabidopsis thaliana OX=3702 GN=UNE12 PE=1 SV=2	[more]
Q93Y00	1.2e-61	52.17	Transcription factor bHLH7 OS=Arabidopsis thaliana OX=3702 GN=BHLH7 PE=1 SV=1	[more]
D0PX88	4.9e-44	55.16	bHLH transcription factor RHL1 OS=Lotus japonicus OX=34305 GN=RHL1 PE=2 SV=1	[more]
Q9ZUG9	6.4e-44	66.04	Transcription factor LRL1 OS=Arabidopsis thaliana OX=3702 GN=LRL1 PE=1 SV=1	[more]
Q9LSQ3	1.6e-42	62.26	Transcription factor LRL3 OS=Arabidopsis thaliana OX=3702 GN=LRL3 PE=2 SV=1	[more]

BLAST of CmaCh11G009900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02590.1	5.7e-64	54.09	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G02590.2	5.7e-64	54.09	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G03040.1	8.2e-63	52.17	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G03040.2	1.5e-61	51.01	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G02590.3	7.7e-61	57.09	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 186..235 e-value: 6.6E-12 score: 55.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 185..229 e-value: 7.4E-8 score: 32.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 180..229 score: 16.526237
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 173..230 e-value: 3.4E-14 score: 54.4
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 178..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..184
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..117
None	No IPR available	PANTHER	PTHR16223:SF198	DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED	coord: 7..324
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 7..324

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G009900.1	CmaCh11G009900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding