CmaCh11G009770 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G009770
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionProtein of unknown function (DUF1685)
LocationCma_Chr11: 5203905 .. 5204807 (+)
RNA-Seq ExpressionCmaCh11G009770
SyntenyCmaCh11G009770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTGCGACTTTCTTCCCATTCTCAACCAAGACACTTCCCAACTTCCCCTATTCCTGTCCCCAGTCCCGACCCGGCCCTCTCCTCGAAAGCGCGGTTGGCGGGTTATTACTAGCCGCCACCGCCGTACGTACTCCTAATGGACAAGAAACATTTAAAAAGAATCACATCAGCTCTATCGCCATTATCATCATGTTCGTCACTCTACGAGCTAGATAACGAGCTAAAACACATACAATTAGCATCATCATGCTTAAAAAACAAGAAACGTTTATCAAAGCAACTTTCAATGTGTGAAACACCAAGAGACCTTGCATGGGAGAAACGACGACGAAGACAAATGCTCCGACCTAAAAACAGCGGCTCGACCGATAAAGATGACTTAACCGACGAAGATTGGAATGAGCTTAAAGGATGCATCGAATTAGGGTTTGCGTTCAATGAGGAAGACGGACATAAGTTATGTGGTACATTACCAGCTCTTGACTTATACTTCGCCGTGAATCGACAGCTCTTGCCGAGTCCAGTGTCGATGCTGCATAGTAGCAAGTCGTCATCGTCGTCACTCGGGGAACGATCTTCATCGTGTGAGAGCCCGAGGGGTGATTGTGATACATGGAGGGTTTGCAGCCCAGGTAAGGAGAGATTTGAGATTGTTTATAATGAAATTAAAGGAATTAAAAAAAGGGTGTAATTTTGATGAATTTGTTCAGGGCAAGATCCGAAGCAAGTGAAGGCAAAATTAAGACATTGGGCTCAAGCAGTGGCATGTTCGGTAATGCAATCATTGGGAGAAAAATAAAAAGGGAATAATGAGGAAAATAAAAAAATAACCCTCAAATTAGGGTTTGGTTCTTAATTAATGTTAAATTAATTGAGCAGTGCTGGTTTGGAGCTAGCTTATG

mRNA sequence

GGCTGCGACTTTCTTCCCATTCTCAACCAAGACACTTCCCAACTTCCCCTATTCCTGTCCCCAGTCCCGACCCGGCCCTCTCCTCGAAAGCGCGGTTGGCGGGTTATTACTAGCCGCCACCGCCGTACGTACTCCTAATGGACAAGAAACATTTAAAAAGAATCACATCAGCTCTATCGCCATTATCATCATGTTCGTCACTCTACGAGCTAGATAACGAGCTAAAACACATACAATTAGCATCATCATGCTTAAAAAACAAGAAACGTTTATCAAAGCAACTTTCAATGTGTGAAACACCAAGAGACCTTGCATGGGAGAAACGACGACGAAGACAAATGCTCCGACCTAAAAACAGCGGCTCGACCGATAAAGATGACTTAACCGACGAAGATTGGAATGAGCTTAAAGGATGCATCGAATTAGGGTTTGCGTTCAATGAGGAAGACGGACATAAGTTATGTGGTACATTACCAGCTCTTGACTTATACTTCGCCGTGAATCGACAGCTCTTGCCGAGTCCAGTGTCGATGCTGCATAGTAGCAAGTCGTCATCGTCGTCACTCGGGGAACGATCTTCATCGTGTGAGAGCCCGAGGGGTGATTGTGATACATGGAGGGTTTGCAGCCCAGGGCAAGATCCGAAGCAAGTGAAGGCAAAATTAAGACATTGGGCTCAAGCAGTGGCATGTTCGGTAATGCAATCATTGGGAGAAAAATAAAAAGGGAATAATGAGGAAAATAAAAAAATAACCCTCAAATTAGGGTTTGGTTCTTAATTAATGTTAAATTAATTGAGCAGTGCTGGTTTGGAGCTAGCTTATG

Coding sequence (CDS)

ATGGACAAGAAACATTTAAAAAGAATCACATCAGCTCTATCGCCATTATCATCATGTTCGTCACTCTACGAGCTAGATAACGAGCTAAAACACATACAATTAGCATCATCATGCTTAAAAAACAAGAAACGTTTATCAAAGCAACTTTCAATGTGTGAAACACCAAGAGACCTTGCATGGGAGAAACGACGACGAAGACAAATGCTCCGACCTAAAAACAGCGGCTCGACCGATAAAGATGACTTAACCGACGAAGATTGGAATGAGCTTAAAGGATGCATCGAATTAGGGTTTGCGTTCAATGAGGAAGACGGACATAAGTTATGTGGTACATTACCAGCTCTTGACTTATACTTCGCCGTGAATCGACAGCTCTTGCCGAGTCCAGTGTCGATGCTGCATAGTAGCAAGTCGTCATCGTCGTCACTCGGGGAACGATCTTCATCGTGTGAGAGCCCGAGGGGTGATTGTGATACATGGAGGGTTTGCAGCCCAGGGCAAGATCCGAAGCAAGTGAAGGCAAAATTAAGACATTGGGCTCAAGCAGTGGCATGTTCGGTAATGCAATCATTGGGAGAAAAATAA

Protein sequence

MDKKHLKRITSALSPLSSCSSLYELDNELKHIQLASSCLKNKKRLSKQLSMCETPRDLAWEKRRRRQMLRPKNSGSTDKDDLTDEDWNELKGCIELGFAFNEEDGHKLCGTLPALDLYFAVNRQLLPSPVSMLHSSKSSSSSLGERSSSCESPRGDCDTWRVCSPGQDPKQVKAKLRHWAQAVACSVMQSLGEK
Homology
BLAST of CmaCh11G009770 vs. TAIR 10
Match: AT1G08790.1 (Protein of unknown function (DUF1685) )

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-45
Identity = 112/187 (59.89%), Postives = 129/187 (68.98%), Query Frame = 0

Query: 8   RITSALS-PLSSCSSLYELD-NELKHIQLASSCLKNKKRLSKQLSMCETPRDLAWEKRRR 67
           R+  ALS   SS SS Y+ +  EL+ + L     K KKRLSKQLSM ET RD+AWE RRR
Sbjct: 3   RVGEALSVSTSSSSSFYDSEVEELQKMPLEPPKAKAKKRLSKQLSMLETRRDIAWE-RRR 62

Query: 68  RQMLRPKNSGSTDKDDLTDEDWNELKGCIELGFAFNEEDGHKLCGTLPALDLYFAVNRQL 127
           RQML      +   DDLTDED +ELKG IELGF FNEE G  L  TLPALDLYFAV RQ+
Sbjct: 63  RQMLHHLEKHNEGGDDLTDEDLSELKGSIELGFGFNEEQGQHLTTTLPALDLYFAVTRQI 122

Query: 128 LP--SPVSMLHSSKSSSSSLGERSSSCESPRGDCDTWRVCSPGQDPKQVKAKLRHWAQAV 187
            P  +P S   SS S  +SLG+RSSS  SP  D D+ +V SPG DP+QVK +LRHWAQAV
Sbjct: 123 SPVSTPGSGGSSSSSRPTSLGDRSSSFGSPISDSDSLKVMSPGDDPQQVKTRLRHWAQAV 182

Query: 188 ACSVMQS 191
           ACSV+QS
Sbjct: 183 ACSVIQS 188

BLAST of CmaCh11G009770 vs. TAIR 10
Match: AT3G04700.1 (Protein of unknown function (DUF1685) )

HSP 1 Score: 171.0 bits (432), Expect = 9.3e-43
Identity = 95/159 (59.75%), Postives = 114/159 (71.70%), Query Frame = 0

Query: 40  KNKKRLSKQLSMCETPRDLAWEKRRRRQ-MLRPK---NSGSTD----KDDLTDEDWNELK 99
           K K RLSKQLSMCETPRD+AWE+RRR+  M++ K   + G++D    + +LTDED NELK
Sbjct: 32  KPKHRLSKQLSMCETPRDVAWERRRRQMIMIQEKKLLHKGASDNLCIQANLTDEDLNELK 91

Query: 100 GCIELGFAFNEEDGHKLCGTLPALDLYFAVNRQLLPSPVSMLHSSKSSSSSLGERSSSCE 159
           G IELGF FNEE G KLC TLPALDLYFAVNRQL P P      S S+S+S    S  C 
Sbjct: 92  GSIELGFGFNEEAGQKLCNTLPALDLYFAVNRQLSPLPSPSSSRSSSASASTFSYSIPCS 151

Query: 160 SPRGDCDTWRVCSPGQDPKQVKAKLRHWAQAVACSVMQS 191
             + D D+ ++  PG DP+Q+K +LRHWAQAVACSVMQS
Sbjct: 152 PKKTDSDSVKILCPGDDPQQMKQRLRHWAQAVACSVMQS 190

BLAST of CmaCh11G009770 vs. TAIR 10
Match: AT3G04710.3 (ankyrin repeat family protein )

HSP 1 Score: 165.6 bits (418), Expect = 3.9e-41
Identity = 91/156 (58.33%), Postives = 111/156 (71.15%), Query Frame = 0

Query: 40  KNKKRLSKQLSMCETPRDLAWEKRRRRQ-MLRPK---NSGSTD----KDDLTDEDWNELK 99
           K K RLSKQLSMCETPRD+AWE+RRR+  M++ K   + G++D    + +LTDED NELK
Sbjct: 32  KPKHRLSKQLSMCETPRDVAWERRRRQMIMIQEKKLLHKGASDNLCIQANLTDEDLNELK 91

Query: 100 GCIELGFAFNEEDGHKLCGTLPALDLYFAVNRQLLPSPVSMLHSSKSSSSSLGERSSSCE 159
           G IELGF FNEE G KLC TLPALDLYFAVNRQL P P      S S+S+S    S  C 
Sbjct: 92  GSIELGFGFNEEAGQKLCNTLPALDLYFAVNRQLSPLPSPSSSRSSSASASTFSYSIPCS 151

Query: 160 SPRGDCDTWRVCSPGQDPKQVKAKLRHWAQAVACSV 188
             + D D+ ++  PG DP+Q+K +LRHWAQAVACS+
Sbjct: 152 PKKTDSDSVKILCPGDDPQQMKQRLRHWAQAVACSI 187

BLAST of CmaCh11G009770 vs. TAIR 10
Match: AT5G28690.1 (Protein of unknown function (DUF1685) )

HSP 1 Score: 164.9 bits (416), Expect = 6.7e-41
Identity = 97/159 (61.01%), Postives = 112/159 (70.44%), Query Frame = 0

Query: 40  KNKKRLSKQLSMCETPRDLAWEKRRRR----QMLRPKNSGSTDKD--DLTDEDWNELKGC 99
           K K+RLSKQLSM ETPRD+AWEKRRR+    Q  + K+    D D  DLTDED  ELKG 
Sbjct: 33  KPKQRLSKQLSMRETPRDVAWEKRRRQMLKIQEKKQKSVSENDNDSPDLTDEDLRELKGS 92

Query: 100 IELGFAFNEEDGHKLCGTLPALDLYFAVNRQL--LPSPVSMLHSSKSSSSSLGERSSSCE 159
           IELGF F+EE G KLC TLPALDLYFAVNRQL  LPSP S      S SS+    SS   
Sbjct: 93  IELGFGFSEEAGQKLCNTLPALDLYFAVNRQLSPLPSPSSSNGGDGSLSSTSVSSSSIPC 152

Query: 160 SPRGDCDTWRVCSPGQDPKQVKAKLRHWAQAVACSVMQS 191
           SP+ D D+ ++  PG +P+QVK +LRHWAQAVACS+MQS
Sbjct: 153 SPKTDSDSLKILCPGDNPQQVKQRLRHWAQAVACSLMQS 191

BLAST of CmaCh11G009770 vs. TAIR 10
Match: AT2G43340.1 (Protein of unknown function (DUF1685) )

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-19
Identity = 63/177 (35.59%), Postives = 96/177 (54.24%), Query Frame = 0

Query: 17  SSCSSLYELDNELKHIQLASSCLKNKKRLSKQLSMCETPRDLAWEKRRRRQMLRPKNSGS 76
           SS SS    ++E + I      +++KK+  K             EK++   +L      S
Sbjct: 26  SSFSSCSYSESEEEEINNGFGVVQSKKQTKK------------LEKKKSNVLLEGYVVDS 85

Query: 77  TDKDD------LTDEDWNELKGCIELGFAFNEEDGHKLCGTLPALDLYFAVNRQLLPSPV 136
              DD      LTD+D  ELKGC++LGF FN E+  +LC TLPAL+L ++++++ +    
Sbjct: 86  AVNDDLKRTKSLTDDDLEELKGCVDLGFGFNYEEIPELCNTLPALELCYSMSQKFIDQ-- 145

Query: 137 SMLHSSKSSSSSLGERSSSCESPRGDCDTWRVCSPGQDPKQVKAKLRHWAQAVACSV 188
                   SSSS  ++SS  +SP     +W++ SPG +P  VKA+L+ WAQAVAC+V
Sbjct: 146 ---DHHHHSSSSPEKKSSVLDSPVSPIASWKISSPGDNPDDVKARLKFWAQAVACTV 185

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT1G08790.11.2e-4559.89Protein of unknown function (DUF1685) [more]
AT3G04700.19.3e-4359.75Protein of unknown function (DUF1685) [more]
AT3G04710.33.9e-4158.33ankyrin repeat family protein [more]
AT5G28690.16.7e-4161.01Protein of unknown function (DUF1685) [more]
AT2G43340.13.2e-1935.59Protein of unknown function (DUF1685) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012881Protein of unknown function DUF1685PFAMPF07939DUF1685coord: 82..139
e-value: 2.4E-22
score: 78.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..149
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..83
NoneNo IPR availablePANTHERPTHR31865:SF3OSJNBA0071G03.3 PROTEINcoord: 29..190
NoneNo IPR availablePANTHERPTHR31865OSJNBA0071G03.3 PROTEINcoord: 29..190

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh11G009770.1CmaCh11G009770.1mRNA