CmaCh11G009330 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G009330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Basic leucine zipper/W2 domain protein
Location	Cma_Chr11: 4903629 .. 4903841 (-)
RNA-Seq Expression	CmaCh11G009330
Synteny	CmaCh11G009330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGAGAGAAGAGCCCTGGTCTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACAAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATTATCAAGTCCGATCAACAACAATCGATGCACCAGCAGCGACAAACGACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGATACATCACAGAATTAG

mRNA sequence

ATGGCGAGAGAGAAGAGCCCTGGTCTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACAAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATTATCAAGTCCGATCAACAACAATCGATGCACCAGCAGCGACAAACGACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGATACATCACAGAATTAG

Coding sequence (CDS)

ATGGCGAGAGAGAAGAGCCCTGGTCTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACAAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATTATCAAGTCCGATCAACAACAATCGATGCACCAGCAGCGACAAACGACGTCTTCCACCGATTCGTTTTTCGTTGGCGAAGGTGATACATCACAGAATTAG

Protein sequence

MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQSMHQQRQTTSSTDSFFVGEGDTSQN

Homology

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BLAST of CmaCh11G009330 vs. TAIR 10
Match: AT1G06010.1 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 6.2e-13
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQSMHQQRQTTSSTDSF 60
          M REKSPGLKILWVWT+GTAAILVTSV R RM+DM++++  +Q+Q+  + +  ++   S 
Sbjct: 1  MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQTMMNQNQEQAPKENQNGSAGDSSV 60

Query: 61 FVGE 65
           + E
Sbjct: 61 LMDE 64

The following BLAST results are available for this feature:

BLAST of CmaCh11G009330 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh11G009330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06010.1	6.2e-13	53.13	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G009330.1	CmaCh11G009330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane