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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. GGAACATATTTGGTGTGGGTGACGCCTAAGTGGAGCTCCCATCTTCCATTCTCTCTTATAACACACAAATTCCCACCTCTCTGCTCTTCTTTGTCATTTCCCACTTTCTCTCTGCTCCAACTTTCACGGAAATCATTCATTCTATTTCTCTCTCAAGGTTGCCTCTCTTTCTCTCTCTCTTTCTCTTTGTTCATCTTCATTTCATTTTGCTCTCTATTGCCTTAGATTGTTCATTTTCTGGGTTTTCTGGTTCTGTTTCTTTGTTTATTTATGTACTCATCCTTCATTTTGGGGATTTGGGGTTTTGGGTATTGTTCTCCTCTTTCTTTTCTATTCATTTGAACAAAACTTGTGTAAAATGCACTGTTGGATTGGCATATTGTGTTGGGGTTTTGAAAGTTTAGAAGTTATTTTAAAGCATAGGATTGGATAGATACTAATTTTGAAAGTTGGGATCTGATTCTTTAGCATGTTTAGACTTGAGTGACACTTTATTTCTTCGGAAGTGTATTGGATTAAACTTGTGATGTGATGTTGCGTTTACTTGTTGAAAAGTTCATAACCCACCTTCAATAGCTCAGTGAAAGAGAGCATCAATTTTTGGTTCCTTGTTTGTGTAACGTTCAAGCCCACCATTCGTAGATATTATCTTTTTTGGGCTTTTCCCTTCGCCCAAGCCTACCGCTAGTTGATATTGTCTTCTTTAGGCTTTTCCTTTCAAGCTTCCTTGGTTTTTAAAAGGCGTTTGCTAGAGAGAAGTTTCCACACCCCTATAAAGGGTATTTCGTTCTTCCTAACCGATTTAGAATCTCACAATCCAACTCCCTTTGAGGCCTAGTGTCCTCGCTGCACTCATTCCTTTCTCCAATCAATGTAGGCCCCCACCAAATCAACTCCCTTCGAAGCCCAACGTCCTTGCTGGCACATCGCCTCATATCCACCTCCCTTCAAGGCTCAGTCTCTTCGTTAGCACATCGCCTAGTGTCTAGCTCAGATATCATTTGTAACGGCCCAAACCCACCGCTAACAGATATTGTCTTTTTTGGGCTTTCCCTCTAGGTTTTTAAAACGTGTCTGCCAGAGAGAGGTTTCCACACTCTTATAAAAATGTTTCGTTTCCCTATCCATAACAACAATGAGTATTATGTAAGAAGGCAACACATCAACTAAAATCCATAAATTACAAATTTAGTTTTTGAGTTTTGAAGTTATGTTTTTAGACATGGAACGTTTTGAATATGTGATTTTAATTTTGGAGACAATTTGTAATTTAAAATGACAATCCATTTCCAACTCTCGAAAGAGTAACTTCTCTACTATTCTGTAGCTGATAAGGGAGAGAACTTTGAGAAGGAAAAATGGATTATGTTTACGCACCTGGAAAAAACCATCTCTTTGTCCCGGGACCGGTGAACATACCCGAACCCGTTCTGCGGGCAATGAATCGAAACAATGAGGATTATCGTTCTCCTGCTATTCCTGCAATGACAAAAACTCTTCTTGAAGATGTGAAAAAGATTTTCAAATCAACTGCTGGAACCACGTTTCTGATTCCCACTACAGGTAACTTACCTTCCCTTTCAAAACACTTACCAGAACAACAACGACAACAACCTTCTATGTTGATCTTCATGTTTATGACTCAGGTACTGGTGCTTGGGAAAGCGCTCTTACGAACACGCTTTCTCCTGGAGATAGGATTGTGTCCTTTCTGATTGGCCAGTTCAGCCTGCTCTGGATTGATCAGCAGCAGCGCCTCAACTTCAACGTTGATGTCGTGGAGAGTGATTGGGGCCAGGGTGCCAATCTTGATGTCCTGGAATCCAAGCTTGCATCTGATGGTGCGCACACAATCAAGGCAATTTGCATTGTCCACAACGAGACAGCCACTGGTGTCACCAATGACTTGTCAAAAGTTCGATTCCTACTCGGTAAGCAAGGAAGGAATGAAGAAAAAAGATCACGTTTTAAGAAAGTCATATAAAAACATGAAAATTTAAAGCTTCTCACTGCCTTATGATCTGTAATCTTCTACTGAAAAACACAGATAAGTACAAGCATCCAGCTCTTTTACTAGTCGACGGAGTGTCGTCGATATGTGCACTTGATTTTCGGATGGATGAATGGGGAGTCGACGTTGCTTTAACTGGTTCCCAGAAGGCTCTTTCTCTCCCTACAGGAATTGGAATTATATGTGCCAGCCCCAAAGCACTAGAGGCATCCAAAACTTCAAAATCAGTCAAGGTATTCTTCGACTGGAAAGACTACCTCAAGTTCTACAAACTAGGAACATACTGGCCATACACTCCTTCCATTCAGCTCTTGTATGGACTAAGAGCAGCTCTGGATCTACTTTTTGAGGAAGGTCTCGACAATGTGATCGCTCGACACAGCCGTCTCGGCAAAGCAACAAGGTAAGGATACCAAAAGTGAGTTACCAGAAACTTCATTGCTCTGAGTTCTGAAATTGAATGCAGGCTTGCTGTGGAGGCTTGGGGGTTGAAGAACTGTACACAAAAAGAGGAATGGTTCAGTGACACTGTGACGGCTGTGCTTGTTCCTTCTTACATTGATAGCTCAGAAATTGTGAGAAGGGCATGGAAAAGATACAATTTGAGCTTGGGACTTGGCCTAAACAAAGTTGCTGGCAAAGTTTTCAGAATTGGCCACCTTGGAAACCTTAATGAGGTAAACTAGTTTACTAGCCTGCCCTTTGTCGAACTCGTTTTCGACGTTTTTGAGAAGTTCATGGCAACAAAACGAATTGATCCATTGAGAAGATTTGTTGAGTTTTAACCATATTTCATCGGGTTCTTATTATTTTCAGTTGCAACTGTTGGGATGTCTTGCTGGGGTGGAGATGATACTGAAGGATGTAGGGTACCCTGTTAAACTAGGGAGTGGAGTTGCTGCAGCTAGTGCATACTTGCAGAATAACATCCCTCTCATTCCTTCAAGGATTTAATGTATCAGCCATGCTCATGTAATTAATTTCCATTCTCTTCACCTCCATCTCAATATGCTACTTCCGGTTATACATTTCAATAATTTTTACTCTGCTATTTCTTTGATTACCTTGACAACTTACTACTAGATCTTCCCTTTATTGTGGAAAATTTAAGAGTTTCTTTAAATGTTTAAAAGAGTTTAAATGTAACCGCCTATGTCTACTCCTCTGGCAGATATTTCTTCTTTGAACTTTTCCTTTCGAGCTTCCCC mRNA sequence GGAACATATTTGGTGTGGGTGACGCCTAAGTGGAGCTCCCATCTTCCATTCTCTCTTATAACACACAAATTCCCACCTCTCTGCTCTTCTTTGTCATTTCCCACTTTCTCTCTGCTCCAACTTTCACGGAAATCATTCATTCTATTTCTCTCTCAAGCTGATAAGGGAGAGAACTTTGAGAAGGAAAAATGGATTATGTTTACGCACCTGGAAAAAACCATCTCTTTGTCCCGGGACCGGTGAACATACCCGAACCCGTTCTGCGGGCAATGAATCGAAACAATGAGGATTATCGTTCTCCTGCTATTCCTGCAATGACAAAAACTCTTCTTGAAGATGTGAAAAAGATTTTCAAATCAACTGCTGGAACCACGTTTCTGATTCCCACTACAGGTACTGGTGCTTGGGAAAGCGCTCTTACGAACACGCTTTCTCCTGGAGATAGGATTGTGTCCTTTCTGATTGGCCAGTTCAGCCTGCTCTGGATTGATCAGCAGCAGCGCCTCAACTTCAACGTTGATGTCGTGGAGAGTGATTGGGGCCAGGGTGCCAATCTTGATGTCCTGGAATCCAAGCTTGCATCTGATGGTGCGCACACAATCAAGGCAATTTGCATTGTCCACAACGAGACAGCCACTGGTGTCACCAATGACTTGTCAAAAGTTCGATTCCTACTCGATAAGTACAAGCATCCAGCTCTTTTACTAGTCGACGGAGTGTCGTCGATATGTGCACTTGATTTTCGGATGGATGAATGGGGAGTCGACGTTGCTTTAACTGGTTCCCAGAAGGCTCTTTCTCTCCCTACAGGAATTGGAATTATATGTGCCAGCCCCAAAGCACTAGAGGCATCCAAAACTTCAAAATCAGTCAAGGTATTCTTCGACTGGAAAGACTACCTCAAGTTCTACAAACTAGGAACATACTGGCCATACACTCCTTCCATTCAGCTCTTGTATGGACTAAGAGCAGCTCTGGATCTACTTTTTGAGGAAGGTCTCGACAATGTGATCGCTCGACACAGCCGTCTCGGCAAAGCAACAAGGCTTGCTGTGGAGGCTTGGGGGTTGAAGAACTGTACACAAAAAGAGGAATGGTTCAGTGACACTGTGACGGCTGTGCTTGTTCCTTCTTACATTGATAGCTCAGAAATTGTGAGAAGGGCATGGAAAAGATACAATTTGAGCTTGGGACTTGGCCTAAACAAAGTTGCTGGCAAAGTTTTCAGAATTGGCCACCTTGGAAACCTTAATGAGTTGCAACTGTTGGGATGTCTTGCTGGGGTGGAGATGATACTGAAGGATGTAGGGTACCCTGTTAAACTAGGGAGTGGAGTTGCTGCAGCTAGTGCATACTTGCAGAATAACATCCCTCTCATTCCTTCAAGGATTTAATGTATCAGCCATGCTCATGTAATTAATTTCCATTCTCTTCACCTCCATCTCAATATGCTACTTCCGGTTATACATTTCAATAATTTTTACTCTGCTATTTCTTTGATTACCTTGACAACTTACTACTAGATCTTCCCTTTATTGTGGAAAATTTAAGAGTTTCTTTAAATGTTTAAAAGAGTTTAAATGTAACCGCCTATGTCTACTCCTCTGGCAGATATTTCTTCTTTGAACTTTTCCTTTCGAGCTTCCCC Coding sequence (CDS) ATGGATTATGTTTACGCACCTGGAAAAAACCATCTCTTTGTCCCGGGACCGGTGAACATACCCGAACCCGTTCTGCGGGCAATGAATCGAAACAATGAGGATTATCGTTCTCCTGCTATTCCTGCAATGACAAAAACTCTTCTTGAAGATGTGAAAAAGATTTTCAAATCAACTGCTGGAACCACGTTTCTGATTCCCACTACAGGTACTGGTGCTTGGGAAAGCGCTCTTACGAACACGCTTTCTCCTGGAGATAGGATTGTGTCCTTTCTGATTGGCCAGTTCAGCCTGCTCTGGATTGATCAGCAGCAGCGCCTCAACTTCAACGTTGATGTCGTGGAGAGTGATTGGGGCCAGGGTGCCAATCTTGATGTCCTGGAATCCAAGCTTGCATCTGATGGTGCGCACACAATCAAGGCAATTTGCATTGTCCACAACGAGACAGCCACTGGTGTCACCAATGACTTGTCAAAAGTTCGATTCCTACTCGATAAGTACAAGCATCCAGCTCTTTTACTAGTCGACGGAGTGTCGTCGATATGTGCACTTGATTTTCGGATGGATGAATGGGGAGTCGACGTTGCTTTAACTGGTTCCCAGAAGGCTCTTTCTCTCCCTACAGGAATTGGAATTATATGTGCCAGCCCCAAAGCACTAGAGGCATCCAAAACTTCAAAATCAGTCAAGGTATTCTTCGACTGGAAAGACTACCTCAAGTTCTACAAACTAGGAACATACTGGCCATACACTCCTTCCATTCAGCTCTTGTATGGACTAAGAGCAGCTCTGGATCTACTTTTTGAGGAAGGTCTCGACAATGTGATCGCTCGACACAGCCGTCTCGGCAAAGCAACAAGGCTTGCTGTGGAGGCTTGGGGGTTGAAGAACTGTACACAAAAAGAGGAATGGTTCAGTGACACTGTGACGGCTGTGCTTGTTCCTTCTTACATTGATAGCTCAGAAATTGTGAGAAGGGCATGGAAAAGATACAATTTGAGCTTGGGACTTGGCCTAAACAAAGTTGCTGGCAAAGTTTTCAGAATTGGCCACCTTGGAAACCTTAATGAGTTGCAACTGTTGGGATGTCTTGCTGGGGTGGAGATGATACTGAAGGATGTAGGGTACCCTGTTAAACTAGGGAGTGGAGTTGCTGCAGCTAGTGCATACTTGCAGAATAACATCCCTCTCATTCCTTCAAGGATTTAA Protein sequence MDYVYAPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFKSTAGTTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQGANLDVLESKLASDGAHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIICASPKALEASKTSKSVKVFFDWKDYLKFYKLGTYWPYTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAVLVPSYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPLIPSRI
Homology
BLAST of CmaCh11G008670 vs. ExPASy Swiss-Prot
Match: Q56YA5 (Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana OX=3702 GN=AGT1 PE=1 SV=2) HSP 1 Score: 740.7 bits (1911), Expect = 8.6e-213 Identity = 358/401 (89.28%), Postives = 384/401 (95.76%), Query Frame = 0
Query: 1 MDYVYAPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFKSTAG 60
MDY+Y PG++HLFVPGPVNIPEPV+RAMNRNNEDYRSPAIPA+TKTLLEDVKKIFK+T+G
Sbjct: 1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSG 60
Query: 61 TTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQG 120
T FL PTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQ+RLNFNVDVVESDWGQG
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 120
Query: 121 ANLDVLESKLASDGAHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSI 180
ANL VL SKL+ D HTIKAICIVHNETATGVTND+S VR LLD YKHPALLLVDGVSSI
Sbjct: 121 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 180
Query: 181 CALDFRMDEWGVDVALTGSQKALSLPTGIGIICASPKALEASKTSKSVKVFFDWKDYLKF 240
CALDFRMDEWGVDVALTGSQKALSLPTG+GI+CASPKALEA+KTSKS+KVFFDW DYLKF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKF 240
Query: 241 YKLGTYWPYTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQK 300
YKLGTYWPYTPSIQLLYGLRAALDL+FEEGL+N+IARH+RLGKATRLAVEAWGLKNCTQK
Sbjct: 241 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK 300
Query: 301 EEWFSDTVTAVLVPSYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360
EEW S+TVTAV+VP +ID SEIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLGN+NELQLL
Sbjct: 301 EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLL 360
Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPLIPSRI 402
GCLAGVEMILKDVGYPV +GSGVAAAS YLQ++IPLIPSRI
Sbjct: 361 GCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
BLAST of CmaCh11G008670 vs. ExPASy Swiss-Prot
Match: P55819 (Serine--glyoxylate aminotransferase OS=Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1) OX=272630 GN=sgaA PE=1 SV=2) HSP 1 Score: 451.1 bits (1159), Expect = 1.4e-125 Identity = 225/392 (57.40%), Postives = 285/392 (72.70%), Query Frame = 0
Query: 7 PGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFKSTAGTTFLIP 66
PG+NHLFVPGP NIP+ V+RAM +ED+RS P++TK L ED KK+F ST GT FL P
Sbjct: 7 PGRNHLFVPGPTNIPDRVMRAMMVQSEDHRSVDFPSLTKPLFEDTKKVFGSTEGTIFLFP 66
Query: 67 TTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQGANLDVL 126
+GTG WESAL+NTL+ GD++++ GQFS LWID QRL +V V E +WG GA + +
Sbjct: 67 ASGTGIWESALSNTLARGDKVLAARFGQFSHLWIDMAQRLGLDVVVQEEEWGTGAKPEKI 126
Query: 127 ESKLASDGAHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSICALDFR 186
E L +D H IKA+ +VHNETATGVT+++ VR +D HPALL VDGVSSI +L F+
Sbjct: 127 EEALRADKNHEIKAVMVVHNETATGVTSNIGAVRKAIDAAGHPALLFVDGVSSIGSLPFK 186
Query: 187 MDEWGVDVALTGSQKALSLPTGIGIICASPKALEAS-----KTSKSVKVFFDWKDYLKFY 246
DEW VD A+ GSQK L LP G+G+IC S KAL+A+ + + +V+FDW+D K
Sbjct: 187 ADEWKVDCAIAGSQKGLMLPAGLGVICVSQKALKAAEGQSGRNDRLARVYFDWEDQKKQN 246
Query: 247 KLGTYWPYTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQKE 306
G Y+PYTP + LLYGLR AL LFEEGL+NV RH+ LG+ATR AV AWGLK C +
Sbjct: 247 PTG-YFPYTPPLPLLYGLREALACLFEEGLENVYHRHAVLGEATRQAVAAWGLKTCAKSP 306
Query: 307 EWFSDTVTAVLVPSYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLG 366
EW SDTVTA+L P +D+++I++ A+ RYNL+LG GL++VAGKVFRIGH+G+LNEL LLG
Sbjct: 307 EWNSDTVTAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELSLLG 366
Query: 367 CLAGVEMILKDVGYPVKLGSGVAAASAYLQNN 394
+AG EM L D G V GSGVAAAS+YL+ N
Sbjct: 367 AIAGAEMSLIDNGVKVTPGSGVAAASSYLREN 397
BLAST of CmaCh11G008670 vs. ExPASy Swiss-Prot
Match: O08374 (Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum OX=84 GN=sgaA PE=1 SV=2) HSP 1 Score: 420.6 bits (1080), Expect = 2.0e-116 Identity = 210/385 (54.55%), Postives = 267/385 (69.35%), Query Frame = 0
Query: 11 HLFVPGPVNIPEPVLRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFKSTAGTTFLIPTTGT 70
HLF+PGP NIP+ V AMN ED RSP P T L ED+KK FK G F+ P++GT
Sbjct: 6 HLFIPGPTNIPDAVRMAMNIPMEDMRSPEFPKFTLPLFEDLKKAFKMKDGRVFIFPSSGT 65
Query: 71 GAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQGANLDVLESKL 130
GAWESA+ NTL+ GD+++ GQFSLLW+D +RL V+V + +WG G ++ L
Sbjct: 66 GAWESAVENTLATGDKVLMSRFGQFSLLWVDMCERLGLKVEVCDEEWGTGVPVEKYADIL 125
Query: 131 ASDGAHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSICALDFRMDEW 190
A D H IKA+ + HNETATGV++D++ VR LD KHPALL+VDGVSS+ +LD RM EW
Sbjct: 126 AKDKNHEIKAVFVTHNETATGVSSDVAGVRKALDAAKHPALLMVDGVSSVGSLDMRMGEW 185
Query: 191 GVDVALTGSQKALSLPTGIGIICASPKALE--ASKTSKSVKVFFDWKDYLKFYKLGTYWP 250
GVD ++GSQK LPTG+GI+ S KAL+ SK + + FF ++D +K G ++P
Sbjct: 186 GVDCCVSGSQKGFMLPTGLGILAVSQKALDINKSKNGRMNRCFFSFEDMIKTNDQG-FFP 245
Query: 251 YTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQKEEWFSDTV 310
YTP+ QLL GLR +LDLLF EGLDNV ARH+RL R AV+AWGLK C ++ +W+SDTV
Sbjct: 246 YTPATQLLRGLRTSLDLLFAEGLDNVFARHTRLASGVRAAVDAWGLKLCAKEPKWYSDTV 305
Query: 311 TAVLVPSYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEM 370
+A+LVP IDS+ I + A+ RYN S GLGLNKVAGKVFRIGHLG L+E+ + G L EM
Sbjct: 306 SAILVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALFAAEM 365
Query: 371 ILKDVGYPVKLGSGVAAASAYLQNN 394
LKD G +KLGSG AA+ Y N
Sbjct: 366 ALKDNGVNLKLGSGTGAAAEYFSKN 389
BLAST of CmaCh11G008670 vs. ExPASy Swiss-Prot
Match: A1B8Z3 (L-aspartate--glyoxylate aminotransferase OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=bhcA PE=1 SV=1) HSP 1 Score: 382.5 bits (981), Expect = 5.9e-105 Identity = 188/381 (49.34%), Postives = 255/381 (66.93%), Query Frame = 0
Query: 9 KNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFKSTAGTTFLIPTT 68
+N +F+PGP NIPE + +A++ D+RSP M LE VKK+ K+T FL P+T
Sbjct: 4 QNPIFIPGPTNIPEEMRKAVDMPTIDHRSPVFGRMLHPALEGVKKVLKTTQAQVFLFPST 63
Query: 69 GTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQGANLDVLES 128
GTG WE+A+TNTLSPGD++++ G FS WID QR +V VE+ WG+G D E
Sbjct: 64 GTGGWETAITNTLSPGDKVLAARNGMFSHRWIDMCQRHGLDVTFVETPWGEGVPADRFEE 123
Query: 129 KLASDGAHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSICALDFRMD 188
L +D H I+ + HNETATGV +D++ VR LD KHPALL VDGVSSI ++DFRMD
Sbjct: 124 ILTADKGHEIRVVLATHNETATGVKSDIAAVRRALDAAKHPALLFVDGVSSIGSMDFRMD 183
Query: 189 EWGVDVALTGSQKALSLPTGIGIICASPKALEASKTSKSVKVFFDWKDYLKFYKLGTYWP 248
EWGVD+A+TGSQK LP G+ I+ SPKA+EA +T++ + FFD +D Y Y P
Sbjct: 184 EWGVDIAVTGSQKGFMLPPGLAIVGFSPKAMEAVETARLPRTFFDIRDMATGYARNGY-P 243
Query: 249 YTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQKEEWFSDTV 308
YTP + L+ GL A+ + + EGL+NV ARH R+ R AV+AWGLK C + E +SD+V
Sbjct: 244 YTPPVGLINGLNASCERILAEGLENVFARHHRIASGVRAAVDAWGLKLCAVRPELYSDSV 303
Query: 309 TAVLVPSYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEM 368
+A+ VP D++ IV A + Y+++ G GL +VAGKVFRIGHLG+L + L +A EM
Sbjct: 304 SAIRVPEGFDANLIVSHALETYDMAFGTGLGQVAGKVFRIGHLGSLTDAMALSGIATAEM 363
Query: 369 ILKDVGYPVKLGSGVAAASAY 390
++ D+G P++LGSGVAAA +
Sbjct: 364 VMADLGLPIQLGSGVAAAQEH 383
BLAST of CmaCh11G008670 vs. ExPASy Swiss-Prot
Match: P16421 (Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica OX=1165 PE=1 SV=1) HSP 1 Score: 233.0 bits (593), Expect = 5.8e-60 Identity = 132/382 (34.55%), Postives = 219/382 (57.33%), Query Frame = 0
Query: 12 LFVPGPVNIPEPVLRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFKSTAGTTFLIPTTGTG 71
L +PGP +PE L A+ ++ +R+ M + +++K + + T ++ +GTG
Sbjct: 7 LMIPGPTPVPEAALLALAKHPIGHRTSEFSNMMGEVTQNLKWLHQ-TESDVLMLNVSGTG 66
Query: 72 AWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQGANLDVLESKLA 131
A E+ + N LSPGDRI+ G+F W++ Q NV+ + ++WGQ + D KL
Sbjct: 67 AVEAGMINFLSPGDRILVGSNGKFGERWVEVGQAFGLNVEAITAEWGQPLDPDKFAQKLQ 126
Query: 132 SDGAHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSICALDFRMDEWG 191
+D IKA+ I H+ET+TGV NDL + + ++ AL++VD V+S+ A + +D G
Sbjct: 127 ADTNKEIKAVIITHSETSTGVINDLVAINSHVKEHGQ-ALIIVDAVTSLGAYNVPVDALG 186
Query: 192 VDVALTGSQKALSLPTGIGIICASPKALEASKTSKSVKVFFDWKDYLKFYKLGTYWPYTP 251
+DV +GSQK +P G+G + SPKA EA KT+K K + D Y K T P+TP
Sbjct: 187 LDVVASGSQKGYMIPPGLGFVSVSPKAWEAYKTAKLPKYYLDLGKYRKATAKNT-TPFTP 246
Query: 252 SIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQKEEWFSDTVTAV 311
+ L+ L L ++ +EGL+++ RH R ATR A++A L +E S +TAV
Sbjct: 247 PVNLMVALHTTLGMMKKEGLESIFTRHERQKNATRAAMKALNLP-LFAADECASPAITAV 306
Query: 312 LVPSYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLLGCLAGVEMILK 371
P +++ +I KR++++L G + ++ K+FR+GHLG +++ +L C+A +E++L
Sbjct: 307 ATPG-MEADKIRSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSDRDILSCIASLEVVLL 366
Query: 372 DVGYP-VKLGSGVAAASAYLQN 393
++G+ G+GVAAA+ N
Sbjct: 367 ELGHENFNSGAGVAAAARVFSN 383
BLAST of CmaCh11G008670 vs. TAIR 10
Match: AT2G13360.1 (alanine:glyoxylate aminotransferase ) HSP 1 Score: 740.7 bits (1911), Expect = 6.1e-214 Identity = 358/401 (89.28%), Postives = 384/401 (95.76%), Query Frame = 0
Query: 1 MDYVYAPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFKSTAG 60
MDY+Y PG++HLFVPGPVNIPEPV+RAMNRNNEDYRSPAIPA+TKTLLEDVKKIFK+T+G
Sbjct: 1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSG 60
Query: 61 TTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQG 120
T FL PTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQ+RLNFNVDVVESDWGQG
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 120
Query: 121 ANLDVLESKLASDGAHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSI 180
ANL VL SKL+ D HTIKAICIVHNETATGVTND+S VR LLD YKHPALLLVDGVSSI
Sbjct: 121 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 180
Query: 181 CALDFRMDEWGVDVALTGSQKALSLPTGIGIICASPKALEASKTSKSVKVFFDWKDYLKF 240
CALDFRMDEWGVDVALTGSQKALSLPTG+GI+CASPKALEA+KTSKS+KVFFDW DYLKF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKF 240
Query: 241 YKLGTYWPYTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQK 300
YKLGTYWPYTPSIQLLYGLRAALDL+FEEGL+N+IARH+RLGKATRLAVEAWGLKNCTQK
Sbjct: 241 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK 300
Query: 301 EEWFSDTVTAVLVPSYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360
EEW S+TVTAV+VP +ID SEIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLGN+NELQLL
Sbjct: 301 EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLL 360
Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPLIPSRI 402
GCLAGVEMILKDVGYPV +GSGVAAAS YLQ++IPLIPSRI
Sbjct: 361 GCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
BLAST of CmaCh11G008670 vs. TAIR 10
Match: AT2G13360.2 (alanine:glyoxylate aminotransferase ) HSP 1 Score: 740.7 bits (1911), Expect = 6.1e-214 Identity = 358/401 (89.28%), Postives = 384/401 (95.76%), Query Frame = 0
Query: 1 MDYVYAPGKNHLFVPGPVNIPEPVLRAMNRNNEDYRSPAIPAMTKTLLEDVKKIFKSTAG 60
MDY+Y PG++HLFVPGPVNIPEPV+RAMNRNNEDYRSPAIPA+TKTLLEDVKKIFK+T+G
Sbjct: 1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSG 60
Query: 61 TTFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESDWGQG 120
T FL PTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQ+RLNFNVDVVESDWGQG
Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 120
Query: 121 ANLDVLESKLASDGAHTIKAICIVHNETATGVTNDLSKVRFLLDKYKHPALLLVDGVSSI 180
ANL VL SKL+ D HTIKAICIVHNETATGVTND+S VR LLD YKHPALLLVDGVSSI
Sbjct: 121 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 180
Query: 181 CALDFRMDEWGVDVALTGSQKALSLPTGIGIICASPKALEASKTSKSVKVFFDWKDYLKF 240
CALDFRMDEWGVDVALTGSQKALSLPTG+GI+CASPKALEA+KTSKS+KVFFDW DYLKF
Sbjct: 181 CALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWNDYLKF 240
Query: 241 YKLGTYWPYTPSIQLLYGLRAALDLLFEEGLDNVIARHSRLGKATRLAVEAWGLKNCTQK 300
YKLGTYWPYTPSIQLLYGLRAALDL+FEEGL+N+IARH+RLGKATRLAVEAWGLKNCTQK
Sbjct: 241 YKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLKNCTQK 300
Query: 301 EEWFSDTVTAVLVPSYIDSSEIVRRAWKRYNLSLGLGLNKVAGKVFRIGHLGNLNELQLL 360
EEW S+TVTAV+VP +ID SEIVRRAW+RYNLSLGLGLNKVAGKVFRIGHLGN+NELQLL
Sbjct: 301 EEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLL 360
Query: 361 GCLAGVEMILKDVGYPVKLGSGVAAASAYLQNNIPLIPSRI 402
GCLAGVEMILKDVGYPV +GSGVAAAS YLQ++IPLIPSRI
Sbjct: 361 GCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Q56YA5 | 8.6e-213 | 89.28 | Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana OX=3702 GN=AGT1 PE=1... | [more] |
| P55819 | 1.4e-125 | 57.40 | Serine--glyoxylate aminotransferase OS=Methylorubrum extorquens (strain ATCC 147... | [more] |
| O08374 | 2.0e-116 | 54.55 | Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum OX=84 GN=sgaA... | [more] |
| A1B8Z3 | 5.9e-105 | 49.34 | L-aspartate--glyoxylate aminotransferase OS=Paracoccus denitrificans (strain Pd ... | [more] |
| P16421 | 5.8e-60 | 34.55 | Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica OX=1165 PE=1 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G13360.1 | 6.1e-214 | 89.28 | alanine:glyoxylate aminotransferase | [more] |
| AT2G13360.2 | 6.1e-214 | 89.28 | alanine:glyoxylate aminotransferase | [more] |
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR015422 | Pyridoxal phosphate-dependent transferase, small domain | GENE3D | 3.90.1150.10 | Aspartate Aminotransferase, domain 1 | coord: 16..386
e-value: 3.8E-110
score: 370.0 |
| IPR000192 | Aminotransferase class V domain | PFAM | PF00266 | Aminotran_5 | coord: 12..311
e-value: 6.7E-32
score: 110.9 |
| IPR015421 | Pyridoxal phosphate-dependent transferase, major domain | GENE3D | 3.40.640.10 | | coord: 21..269
e-value: 3.8E-110
score: 370.0 |
| IPR024169 | Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase | PIRSF | PIRSF000524 | SPT | coord: 4..395
e-value: 8.2E-123
score: 408.1 |
| None | No IPR available | PIRSR | PIRSR000524-50 | PIRSR000524-50 | coord: 9..393
e-value: 1.9E-122
score: 406.8 |
| None | No IPR available | PANTHER | PTHR21152 | AMINOTRANSFERASE CLASS V | coord: 1..371 |
| None | No IPR available | PANTHER | PTHR21152:SF24 | SERINE--PYRUVATE AMINOTRANSFERASE | coord: 1..371 |
| None | No IPR available | CDD | cd06451 | AGAT_like | coord: 11..371
e-value: 5.9627E-178
score: 497.969 |
| IPR020578 | Aminotransferase class-V, pyridoxal-phosphate binding site | PROSITE | PS00595 | AA_TRANSFER_CLASS_5 | coord: 192..212 |
| IPR015424 | Pyridoxal phosphate-dependent transferase | SUPERFAMILY | 53383 | PLP-dependent transferases | coord: 9..375 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0019265 |
glycine biosynthetic process, by transamination of glyoxylate |
| cellular_component |
GO:0005777 |
peroxisome |
| molecular_function |
GO:0008453 |
alanine-glyoxylate transaminase activity |
| molecular_function |
GO:0004760 |
serine-pyruvate transaminase activity |
| molecular_function |
GO:0003824 |
catalytic activity |
|
