CmaCh11G008470 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G008470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	cyclin-dependent protein kinase inhibitor SMR9-like
Location	Cma_Chr11: 4276617 .. 4277000 (+)
RNA-Seq Expression	CmaCh11G008470
Synteny	CmaCh11G008470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAAGGAGGAAGAACAAGACGAGGAACAAACCCAACACCTCCATTGAAGAAAACGAAGAAGAAGCTCAAGAACAGCACCAACAATGGCGGAAGAAGAAGAATCATAATGAGTACTAAAATAAGAGAAGAAATTGAAGAAGCAGCTTCAAGCTCCTCTGCCATGGCTGCCATTGATGAACCAGCTTCAAGCTCTGATTTTGAACACTGTAGCACTCCAAAAGCTGATAGATTTAAGATCCCAGAGATTCAAATTTGCCCACCAGCTCCAAAAAAACAGAGGCCCATTTCAAATTGTTCTTTGCAAAAACATTCTCCAATTGCCTTCTTTGCTTCACCTGATATAGAGCTTTTCTTCTTCTTCTCACAATCAAATTAG

mRNA sequence

ATGGCTTCCAAAGGAGGAAGAACAAGACGAGGAACAAACCCAACACCTCCATTGAAGAAAACGAAGAAGAAGCTCAAGAACAGCACCAACAATGGCGGAAGAAGAAGAATCATAATGAGTACTAAAATAAGAGAAGAAATTGAAGAAGCAGCTTCAAGCTCCTCTGCCATGGCTGCCATTGATGAACCAGCTTCAAGCTCTGATTTTGAACACTGTAGCACTCCAAAAGCTGATAGATTTAAGATCCCAGAGATTCAAATTTGCCCACCAGCTCCAAAAAAACAGAGGCCCATTTCAAATTGTTCTTTGCAAAAACATTCTCCAATTGCCTTCTTTGCTTCACCTGATATAGAGCTTTTCTTCTTCTTCTCACAATCAAATTAG

Coding sequence (CDS)

ATGGCTTCCAAAGGAGGAAGAACAAGACGAGGAACAAACCCAACACCTCCATTGAAGAAAACGAAGAAGAAGCTCAAGAACAGCACCAACAATGGCGGAAGAAGAAGAATCATAATGAGTACTAAAATAAGAGAAGAAATTGAAGAAGCAGCTTCAAGCTCCTCTGCCATGGCTGCCATTGATGAACCAGCTTCAAGCTCTGATTTTGAACACTGTAGCACTCCAAAAGCTGATAGATTTAAGATCCCAGAGATTCAAATTTGCCCACCAGCTCCAAAAAAACAGAGGCCCATTTCAAATTGTTCTTTGCAAAAACATTCTCCAATTGCCTTCTTTGCTTCACCTGATATAGAGCTTTTCTTCTTCTTCTCACAATCAAATTAG

Protein sequence

MASKGGRTRRGTNPTPPLKKTKKKLKNSTNNGGRRRIIMSTKIREEIEEAASSSSAMAAIDEPASSSDFEHCSTPKADRFKIPEIQICPPAPKKQRPISNCSLQKHSPIAFFASPDIELFFFFSQSN

Homology

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BLAST of CmaCh11G008470 vs. ExPASy Swiss-Prot
Match: Q3ECS5 (Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 GN=SMR9 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.6e-09
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 20  KTKKKLKNSTNNGGRRRIIMS----TKIREEIEEAASSSSAMAAIDEPASSSDFEHCSTP 79
           K KK L+ +T    +R    +      I  ++   +S+S++  +   P+  S    C TP
Sbjct: 4   KGKKPLRRTTTRRRKRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATPSPVSAESGCCTP 63

Query: 80  KADRFKIPEIQICPPAPKKQRPISNCSLQKHSPIAFFASPDIELFFFFS 125
           +  R  IPE+  CPPAPKKQ+   NC+L++   IAFFA PD+ELFF F+
Sbjct: 64  EKSR--IPEMLTCPPAPKKQKVAQNCALRRRQ-IAFFAPPDVELFFVFA 109

[Close]

BLAST of CmaCh11G008470 vs. ExPASy Swiss-Prot
Match: F4IWB3 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.2e-08
Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 0


Query: 19  KKTKKKLKNSTNNGGRRRIIMSTKIREEIEEAASSSSAMAAIDEPASSSDFEHCSTPKAD 78
           +K  +  K  T +  ++++     I      +  S S  A +  P        C TPKA 
Sbjct: 7   RKPNRAEKKLTRSCFKKQVPQHNNINTNTIYSVPSPSPAAVLTSPGG------CCTPKAK 66

Query: 79  RFKIPEIQICPPAPKKQRPISNCSLQKHSPIAFFASPDIELFF 122
           + +IPE+  CPPAPKKQR   NC L++   I FFA P+IELFF
Sbjct: 67  KSRIPEMLTCPPAPKKQRVSKNCVLRRRQ-IVFFAPPEIELFF 102

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BLAST of CmaCh11G008470 vs. TAIR 10
Match: AT1G51355.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20898.1); Has 52 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-10
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 20  KTKKKLKNSTNNGGRRRIIMS----TKIREEIEEAASSSSAMAAIDEPASSSDFEHCSTP 79
           K KK L+ +T    +R    +      I  ++   +S+S++  +   P+  S    C TP
Sbjct: 4   KGKKPLRRTTTRRRKRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATPSPVSAESGCCTP 63

Query: 80  KADRFKIPEIQICPPAPKKQRPISNCSLQKHSPIAFFASPDIELFFFFS 125
           +  R  IPE+  CPPAPKKQ+   NC+L++   IAFFA PD+ELFF F+
Sbjct: 64  EKSR--IPEMLTCPPAPKKQKVAQNCALRRRQ-IAFFAPPDVELFFVFA 109

[Close]

BLAST of CmaCh11G008470 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-09
Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 0


Query: 19  KKTKKKLKNSTNNGGRRRIIMSTKIREEIEEAASSSSAMAAIDEPASSSDFEHCSTPKAD 78
           +K  +  K  T +  ++++     I      +  S S  A +  P        C TPKA 
Sbjct: 7   RKPNRAEKKLTRSCFKKQVPQHNNINTNTIYSVPSPSPAAVLTSPGG------CCTPKAK 66

Query: 79  RFKIPEIQICPPAPKKQRPISNCSLQKHSPIAFFASPDIELFF 122
           + +IPE+  CPPAPKKQR   NC L++   I FFA P+IELFF
Sbjct: 67  KSRIPEMLTCPPAPKKQRVSKNCVLRRRQ-IVFFAPPEIELFF 102

[Close]

BLAST of CmaCh11G008470 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 31/99 (31.31%), Postives = 52/99 (52.53%), Query Frame = 0


Query: 26  KNSTNNGGRRRIIMSTKIREEIEEAASSSSAMAAIDEPASSSDFEHC-STPKADRFKIPE 85
           K S    G++ +I    +   ++  + SSSA+      +++ D + C +TP AD  +IP 
Sbjct: 14  KFSETTEGKKCVITGISLHSTVKPISLSSSAV------SNTEDEDLCPTTPTADSVRIPT 73

Query: 86  IQICPPAPKKQRPISNCSLQKHSPIAFFASPDIELFFFF 124
           +  CPPAPKK++     S   + P  FF+ PD+E  F +
Sbjct: 74  VIPCPPAPKKRKLTLKVS---YGPREFFSPPDLETVFIY 103

[Close]

BLAST of CmaCh11G008470 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 7.3e-04
Identity = 30/105 (28.57%), Postives = 51/105 (48.57%), Query Frame = 0


Query: 22  KKKLKNSTNNGGRRRIIMSTKIREEIEEAASSSSA----MAAIDEPASSSDFEHCSTPKA 81
           K + +    + G++ +I    IR  ++   +   A    +  ++E   + + E  +TP A
Sbjct: 6   KSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECSTTPTA 65

Query: 82  DRFKIPEIQICPPAPKKQRPISNCSLQKHSPIAFFASP-DIELFF 122
              KIPE+  CPPAP+K+RP   C  + +    FF  P D+E  F
Sbjct: 66  KETKIPELLECPPAPRKRRPALKC--RSNVVREFFTPPSDLETVF 108

The following BLAST results are available for this feature:

BLAST of CmaCh11G008470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3ECS5	5.6e-09	37.61	Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 G...	[more]
F4IWB3	6.2e-08	36.89	Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CmaCh11G008470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51355.1	4.0e-10	37.61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G20898.1	4.4e-09	36.89	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G60783.1	1.1e-04	31.31	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G40460.1	7.3e-04	28.57	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..30
None	No IPR available	PANTHER	PTHR33142:SF75	SUBFAMILY NOT NAMED	coord: 14..124
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 14..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G008470.1	CmaCh11G008470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication